MELO3C015187 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015187
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
Location	chr2 : 5631733 .. 5632161 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGATACATAATACATACGATCTACCTATTGTACCTCCACTAGTTCATAAGGGATGTGTTCGAGTGGAAGAAGTTGAACTCGATGAAGTTTACCGTAATGTAGAAGAAGTGCCTCCTACGACACAGACACAAAGCCAAACTGGTTGTGGTAGTTTAACGATGATGATGTCAACATTTGGATCAAGATATTGTGATTCTGAAGTCGGTACAAGATATTATAATTTAGGGGTCGGTCCATCGTCTTCATACATGAATGTCGGTCCATCAACTTCATACATGGATGTCAGTCCATCAACTTCTTACATGCATGGACACGGACATGGCTATTGGGAACATAATGAATATTTGTATCATGAAACACCTGCAGAGTTATCAGATCAACAAGAGTACCAACAAGAACTAAGAGGAGCCAAAACAACATAG

mRNA sequence

ATGGAGGAGATACATAATACATACGATCTACCTATTGTACCTCCACTAGTTCATAAGGGATGTGTTCGAGTGGAAGAAGTTGAACTCGATGAAGTTTACCGTAATGTAGAAGAAGTGCCTCCTACGACACAGACACAAAGCCAAACTGGTTGTGGTAGTTTAACGATGATGATGTCAACATTTGGATCAAGATATTGTGATTCTGAAGTCGGTACAAGATATTATAATTTAGGGGTCGGTCCATCGTCTTCATACATGAATGTCGGTCCATCAACTTCATACATGGATGTCAGTCCATCAACTTCTTACATGCATGGACACGGACATGGCTATTGGGAACATAATGAATATTTGTATCATGAAACACCTGCAGAGTTATCAGATCAACAAGAGTACCAACAAGAACTAAGAGGAGCCAAAACAACATAG

Coding sequence (CDS)

ATGGAGGAGATACATAATACATACGATCTACCTATTGTACCTCCACTAGTTCATAAGGGATGTGTTCGAGTGGAAGAAGTTGAACTCGATGAAGTTTACCGTAATGTAGAAGAAGTGCCTCCTACGACACAGACACAAAGCCAAACTGGTTGTGGTAGTTTAACGATGATGATGTCAACATTTGGATCAAGATATTGTGATTCTGAAGTCGGTACAAGATATTATAATTTAGGGGTCGGTCCATCGTCTTCATACATGAATGTCGGTCCATCAACTTCATACATGGATGTCAGTCCATCAACTTCTTACATGCATGGACACGGACATGGCTATTGGGAACATAATGAATATTTGTATCATGAAACACCTGCAGAGTTATCAGATCAACAAGAGTACCAACAAGAACTAAGAGGAGCCAAAACAACATAG

Protein sequence

MEEIHNTYDLPIVPPLVHKGCVRVEEVELDEVYRNVEEVPPTTQTQSQTGCGSLTMMMSTFGSRYCDSEVGTRYYNLGVGPSSSYMNVGPSTSYMDVSPSTSYMHGHGHGYWEHNEYLYHETPAELSDQQEYQQELRGAKTT*

Homology

[Close]

BLAST of MELO3C015187 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.8e-21
Identity = 68/148 (45.95%), Postives = 87/148 (58.78%), Query Frame = 1


Query: 1   MEEIHNTYDLPIVPPLVHKGCVRVEEVE-LDEVYRNVEEVPPTTQTQSQTGCG--SLTMM 60
           ME IH  YD+PIVP  V +    V+E + L+EV ++ EEVPP TQTQ+Q+     S  MM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MSTFGSRYCDSEVGTR------YYNLGVGPSSSYMNVGPSTSYMDVSPSTSYMHGHGHGY 120
           M TFG  Y DS VG        YYN   G SS+  + G     +   PS+SYMHGHG G 
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSST--DFGQQYYDLGSDPSSSYMHGHGRGR 196

Query: 121 WEHNEYLYHETPAELSDQQEYQQELRGA 140
            EHNEYLY++ PA + +Q + QQ+   A
Sbjct: 197 GEHNEYLYYKVPAAVPEQSDEQQQQENA 222

[Close]

BLAST of MELO3C015187 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 41/90 (45.56%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1   MEEIHNTYDLPIVPPLVHKGCVRVEEVELDEVYRNVEEVPPTTQTQSQTGCGSLTMMMST 60
           +  ++ TY LP       + C  V+  +L+EV +NVEEV P TQTQS+ G  SL MMM T
Sbjct: 150 LSTLYITYFLP-------ETCSSVKSDQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMPT 209

Query: 61  FGSRYCDSEVG------TRYYNLGVGPSSS 85
           FG+ Y D  VG      T YYN   G SSS
Sbjct: 210 FGTTYYDYGVGQSSDFRTWYYNSEAGSSSS 232

The following BLAST results are available for this feature:

BLAST of MELO3C015187 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069376\|ref\|XP_008449513.1\|	1.8e-21	45.95	PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo]	[more]
gi\|778688386\|ref\|XP_011652738.1\|	2.0e-07	45.56	PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015187T1	MELO3C015187T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015187	Cucurbita moschata (Rifu)	cmomeB058
MELO3C015187	Wild cucumber (PI 183967)	cpimeB042
MELO3C015187	Wild cucumber (PI 183967)	cpimeB463
MELO3C015187	Cucumber (Chinese Long) v2	cumeB041
MELO3C015187	Watermelon (Charleston Gray)	mewcgB245
MELO3C015187	Watermelon (Charleston Gray)	mewcgB238
MELO3C015187	Watermelon (97103) v1	mewmB271
MELO3C015187	Watermelon (97103) v1	mewmB283
MELO3C015187	Cucurbita pepo (Zucchini)	cpemeB329
MELO3C015187	Cucurbita pepo (Zucchini)	cpemeB620
MELO3C015187	Bottle gourd (USVL1VR-Ls)	lsimeB069
MELO3C015187	Bottle gourd (USVL1VR-Ls)	lsimeB396
MELO3C015187	Cucumber (Gy14) v2	cgybmeB038
MELO3C015187	Cucumber (Gy14) v2	cgybmeB405
MELO3C015187	Silver-seed gourd	carmeB0178
MELO3C015187	Silver-seed gourd	carmeB0472
MELO3C015187	Silver-seed gourd	carmeB0527
MELO3C015187	Cucumber (Chinese Long) v3	cucmeB042
MELO3C015187	Cucumber (Chinese Long) v3	cucmeB474
MELO3C015187	Watermelon (97103) v2	mewmbB243
MELO3C015187	Watermelon (97103) v2	mewmbB249
MELO3C015187	Wax gourd	mewgoB278
MELO3C015187	Wax gourd	mewgoB305
MELO3C015187	Melon (DHL92) v3.5.1	memeB109
MELO3C015187	Cucurbita moschata (Rifu)	cmomeB097
MELO3C015187	Cucumber (Gy14) v1	cgymeB238
MELO3C015187	Cucurbita maxima (Rimu)	cmameB066
MELO3C015187	Cucurbita maxima (Rimu)	cmameB104