MELO3C013159 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013159
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein of unknown function, DUF584
Location	chr1 : 12738179 .. 12738981 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAACGATGTCGTAGCTACAAAACCCTCCCTCCCCATTTCCTTCCGACCTTCTCTTTATAATTCTAAAAATTCACTTCTTCAAATATATTCCTCACAGATTCATCAAATCTTCCATAATAATTCTCTTGACCAGCCCCCATGGACGGCGCCAGAACTGCCCTCACCACCGCTCTCTGGCGGTCCTTCAGAAACGGCGATTTCGAAGAACAAGACGTCTGGAATGTTCTCAACGACCACGAATCCACAACCACTTCCACAACCACCTCCTATCATTCCAATTTCTCCACTGCCGATTCATCCTTTCTCCCCTCCGCTTCCAGAATGATTCCGAGGCCCAACGGCGGCGTGGGTGGTCAAATTGGGTTGATTCCGCAGTGGTTGAAAAGCGAGAGAAGTAAAAACCCTAGGAATAGGATCAGGAAAGTGTGTTGGGATGAAGAGGATGATGAGGATGGAGTTGAGGGCGGCGGTCATAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGGAGAAGGAATTGAGAAGAGAGTTCCGCCGCATGAATTGATAGCAAAGAGATTGGCTAGGGCTCAGATATCGTCGTTCTCGGTGTTTGAAGGAGCTGGAAGAACTTTGAAAGGAAGGGATCTGAGTAAAGTAAGAAATGCTGTTCTAACAAAAACTGGATTTCTTGAATCCATATGACACTCAAAATCAAAATTTGGGTATTTTGTGAAATAGTTTCTCTCTTTTCTAGGGGTATTTTTGAAATTTCAGCCTTTTATTTCCATTTTTTTTTTTTTTTT

mRNA sequence

GGAAAACGATGTCGTAGCTACAAAACCCTCCCTCCCCATTTCCTTCCGACCTTCTCTTTATAATTCTAAAAATTCACTTCTTCAAATATATTCCTCACAGATTCATCAAATCTTCCATAATAATTCTCTTGACCAGCCCCCATGGACGGCGCCAGAACTGCCCTCACCACCGCTCTCTGGCGGTCCTTCAGAAACGGCGATTTCGAAGAACAAGACGTCTGGAATGTTCTCAACGACCACGAATCCACAACCACTTCCACAACCACCTCCTATCATTCCAATTTCTCCACTGCCGATTCATCCTTTCTCCCCTCCGCTTCCAGAATGATTCCGAGGCCCAACGGCGGCGTGGGTGGTCAAATTGGGTTGATTCCGCAGTGGTTGAAAAGCGAGAGAAGTAAAAACCCTAGGAATAGGATCAGGAAAGTGTGTTGGGATGAAGAGGATGATGAGGATGGAGTTGAGGGCGGCGGTCATAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGGAGAAGGAATTGAGAAGAGAGTTCCGCCGCATGAATTGATAGCAAAGAGATTGGCTAGGGCTCAGATATCGTCGTTCTCGGTGTTTGAAGGAGCTGGAAGAACTTTGAAAGGAAGGGATCTGAGTAAAGTAAGAAATGCTGTTCTAACAAAAACTGGATTTCTTGAATCCATATGACACTCAAAATCAAAATTTGGGTATTTTGTGAAATAGTTTCTCTCTTTTCTAGGGGTATTTTTGAAATTTCAGCCTTTTATTTCCATTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGACGGCGCCAGAACTGCCCTCACCACCGCTCTCTGGCGGTCCTTCAGAAACGGCGATTTCGAAGAACAAGACGTCTGGAATGTTCTCAACGACCACGAATCCACAACCACTTCCACAACCACCTCCTATCATTCCAATTTCTCCACTGCCGATTCATCCTTTCTCCCCTCCGCTTCCAGAATGATTCCGAGGCCCAACGGCGGCGTGGGTGGTCAAATTGGGTTGATTCCGCAGTGGTTGAAAAGCGAGAGAAGTAAAAACCCTAGGAATAGGATCAGGAAAGTGTGTTGGGATGAAGAGGATGATGAGGATGGAGTTGAGGGCGGCGGTCATAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGGAGAAGGAATTGAGAAGAGAGTTCCGCCGCATGAATTGATAGCAAAGAGATTGGCTAGGGCTCAGATATCGTCGTTCTCGGTGTTTGAAGGAGCTGGAAGAACTTTGAAAGGAAGGGATCTGAGTAAAGTAAGAAATGCTGTTCTAACAAAAACTGGATTTCTTGAATCCATATGA

Protein sequence

MDGARTALTTALWRSFRNGDFEEQDVWNVLNDHESTTTSTTTSYHSNFSTADSSFLPSASRMIPRPNGGVGGQIGLIPQWLKSERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEEEEEEEEEEEEEEGEGIEKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKTGFLESI*

Homology

[Close]

BLAST of MELO3C013159 vs. TrEMBL
Match: A0A0A0K3A6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G211080 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 9.0e-76
Identity = 154/190 (81.05%), Postives = 161/190 (84.74%), Query Frame = 1


Query: 1   MDGARTALTTALWRSFRNGDFEEQDVWNVLNDHESTTTSTTTSYHSNFST----ADSSFL 60
           MDG RTALTTALWRSFRNGDFEE+DVWNVLN+      S TTSYHS+F T     +S FL
Sbjct: 1   MDGGRTALTTALWRSFRNGDFEEEDVWNVLNEK-----SKTTSYHSSFPTDSSIMESPFL 60

Query: 61  PSASRMIPRPNGGVGGQIGLIPQWLKSERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEE 120
           PSASRMIPRPNGGVG QIG IPQW K+ER KNPRNR  KVCWDEEDDEDGV  GG S+EE
Sbjct: 61  PSASRMIPRPNGGVGAQIGSIPQWSKTERRKNPRNR--KVCWDEEDDEDGVVEGGGSEEE 120

Query: 121 EEEEEEEEEEEEGEGIEKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAV 180
           EEEEEEEEEE    GI KRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAV
Sbjct: 121 EEEEEEEEEE----GIGKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAV 179

Query: 181 LTKTGFLESI 187
           LTKTGFLES+
Sbjct: 181 LTKTGFLESL 179

[Close]

BLAST of MELO3C013159 vs. TAIR10
Match: AT4G21970.1 (AT4G21970.1 Protein of unknown function, DUF584)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-24
Identity = 72/173 (41.62%), Postives = 90/173 (52.02%), Query Frame = 1


Query: 20  DFEEQDVWNVLNDHESTTTSTTTSYHSNFSTADSSFLPSASRMIPRPNGGVGGQIGL--- 79
           +F+E++VW+VL + E+       S  +N  +A SS   S++R IP+ N   GG       
Sbjct: 6   EFQEEEVWSVLRESETQGPEMKMSKSNNLFSASSS---SSARYIPKGNEVSGGAKQSSAP 65

Query: 80  --IPQWLK--SERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEEEEEEEEEEEEEEGEGI 139
             IP W K      KN  + +    W  +DD++G                          
Sbjct: 66  MNIPDWSKVYGYSKKNTSSHLHS--WAIDDDDEG-------------------------- 125

Query: 140 EKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKTGFLES 186
              VPPHEL+AKRLAR QISSFS+ EG GRTLKGRDLSK RNAVLT+TGFLES
Sbjct: 126 -SMVPPHELVAKRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLES 146

[Close]

BLAST of MELO3C013159 vs. TAIR10
Match: AT4G04630.1 (AT4G04630.1 Protein of unknown function, DUF584)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-20
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 1


Query: 20  DFEEQDVWNVLNDHESTTTSTTTSYHSNFSTADSSFLPSASRMIPRPNGGVGGQIGL-IP 79
           +F+E+DVW+VL + E+++           S++ SS  P   R     +G       + +P
Sbjct: 26  EFQEEDVWSVLREGETSSPEMKIPKSHFSSSSSSSSSPWNIRRSKEVSGVKQSSAPMNVP 85

Query: 80  QWLKSERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEEEEEEEEEEEEEEGEGIEKRVPP 139
            W              KV  D + +        H+ ++++E+++             VPP
Sbjct: 86  DW-------------SKVYGDSKSNRRSSHLHSHAADDDDEDDDG----------CMVPP 145

Query: 140 HELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKTGFLE 185
           HE +A++LAR QISSFS+ EG GRTLKGRDLSKVRNAVL+KTGFLE
Sbjct: 146 HEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168

[Close]

BLAST of MELO3C013159 vs. TAIR10
Match: AT3G15040.1 (AT3G15040.1 Protein of unknown function, DUF584)

HSP 1 Score: 78.2 bits (191), Expect = 6.1e-15
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 112 HSKEEEEEEEEEEEEEEGEGIEKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSK 171
           H KE +  +  +++EEE EG  + +PPHE++A+ LA++ + S SV EGAGRTLKGRDL +
Sbjct: 173 HKKEFKLTDVVDDDEEEEEG--EMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQ 232

Query: 172 VRNAVLTKTGFLE 185
           VRNAV  +TGF++
Sbjct: 233 VRNAVFRRTGFID 243

[Close]

BLAST of MELO3C013159 vs. TAIR10
Match: AT2G34340.1 (AT2G34340.1 Protein of unknown function, DUF584)

HSP 1 Score: 74.7 bits (182), Expect = 6.7e-14
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 118 EEEEEEEEEEEGEGIEKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVL 177
           +EE+E  EEE  EG  + +PPH +I +R+   Q++ FSV  G+GRTLKGRDLS+VRN+VL
Sbjct: 70  KEEDEYSEEEYSEGGGEMIPPHIMIGRRIQGGQMA-FSVCSGSGRTLKGRDLSRVRNSVL 129

Query: 178 TKTGFLES 186
             TGFLE+
Sbjct: 130 RLTGFLEA 136

[Close]

BLAST of MELO3C013159 vs. TAIR10
Match: AT5G60680.1 (AT5G60680.1 Protein of unknown function, DUF584)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13
Identity = 50/164 (30.49%), Postives = 78/164 (47.56%), Query Frame = 1


Query: 20  DFEEQDVWNVLNDHESTTTSTTTSYHSNFSTADSSFLPSASRMIPRPNGGVGGQIGL-IP 79
           +F+E D++N ++       S +  +    S++  S   S++R     +      + + +P
Sbjct: 32  EFDESDLFNPIH-------SDSPDFCRKISSSVRSGKKSSNRPSAASSAAAASSLPVNVP 91

Query: 80  QWLKSERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEEEEEEEEEEEEEEGEGIEKRVPP 139
            W K  R +   NR R +  +++DD+D  +GG                         +PP
Sbjct: 92  DWSKILRGEYRDNRRRSIEDNDDDDDDNEDGGDW-----------------------LPP 151

Query: 140 HELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKTGF 183
           HE +AK     +++SFSV EG GRTLKGRDLS+VRNA+  K GF
Sbjct: 152 HEFLAK----TRMASFSVHEGVGRTLKGRDLSRVRNAIFEKFGF 161

[Close]

BLAST of MELO3C013159 vs. NCBI nr
Match: gi|659093817|ref|XP_008447734.1| (PREDICTED: casein kinase II subunit beta-2-like [Cucumis melo])

HSP 1 Score: 378.6 bits (971), Expect = 6.2e-102
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MDGARTALTTALWRSFRNGDFEEQDVWNVLNDHESTTTSTTTSYHSNFSTADSSFLPSAS 60
           MDGARTALTTALWRSFRNGDFEEQDVWNVLNDHESTTTSTTTSYHSNFSTADSSFLPSAS
Sbjct: 1   MDGARTALTTALWRSFRNGDFEEQDVWNVLNDHESTTTSTTTSYHSNFSTADSSFLPSAS 60

Query: 61  RMIPRPNGGVGGQIGLIPQWLKSERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEEEEEE 120
           RMIPRPNGGVGGQIGLIPQWLKSERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEEEEEE
Sbjct: 61  RMIPRPNGGVGGQIGLIPQWLKSERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEEEEEE 120

Query: 121 EEEEEEEEGEGIEKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKT 180
           EEEEEEEEGEGIEKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKT
Sbjct: 121 EEEEEEEEGEGIEKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKT 180

Query: 181 GFLESI 187
           GFLESI
Sbjct: 181 GFLESI 186

[Close]

BLAST of MELO3C013159 vs. NCBI nr
Match: gi|823261045|ref|XP_012463251.1| (PREDICTED: uncharacterized protein LOC105782802 [Gossypium raimondii])

HSP 1 Score: 115.5 bits (288), Expect = 9.7e-23
Identity = 71/172 (41.28%), Postives = 94/172 (54.65%), Query Frame = 1


Query: 15  SFRNGDFEEQDVWNVLNDHESTTTSTTTSYHSNFSTADSSFLPSASRMIPRPNGGVG--G 74
           S R+GDFEE+DVW VL + + +T      + S  S  D   +PSA+RMIPR    +    
Sbjct: 9   SLRDGDFEEEDVWAVLKESKDSTYKV--GHSSEPSIPDRGHVPSAARMIPRTLSAINTSS 68

Query: 75  QIGLIPQWLKSERSKNPRNRIRKVCWDEEDDEDGVEGGGHSKEEEEEEEEEEEEEEGEGI 134
            IG        E +   +    +   D       +  G    ++++++E           
Sbjct: 69  NIGSCCSSYSHEANDVKQQSAPENIPDLSKVSTKMRNGSWHDDDDDDDE----------Y 128

Query: 135 EKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKTGFLE 185
              +PPHE++A+RLAR QISSFSVFEG GR LKGRDL KVRNAVLTKTGFLE
Sbjct: 129 NSMLPPHEILARRLARNQISSFSVFEGVGRKLKGRDLKKVRNAVLTKTGFLE 168

The following BLAST results are available for this feature:

BLAST of MELO3C013159 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3A6_CUCSA	9.0e-76	81.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G211080 PE=4 SV=1	[more]

BLAST of MELO3C013159 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21970.1	3.2e-24	41.62	Protein of unknown function, DUF584	[more]
AT4G04630.1	1.3e-20	36.75	Protein of unknown function, DUF584	[more]
AT3G15040.1	6.1e-15	52.05	Protein of unknown function, DUF584	[more]
AT2G34340.1	6.7e-14	55.88	Protein of unknown function, DUF584	[more]
AT5G60680.1	1.9e-13	30.49	Protein of unknown function, DUF584	[more]

BLAST of MELO3C013159 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093817\|ref\|XP_008447734.1\|	6.2e-102	100.00	PREDICTED: casein kinase II subunit beta-2-like [Cucumis melo]	[more]
gi\|823261045\|ref\|XP_012463251.1\|	9.7e-23	41.28	PREDICTED: uncharacterized protein LOC105782802 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007608	Senescence_reg_S40

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU43518	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013159T1	MELO3C013159T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU43518	MU43518	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 20..184 score: 1.8
None	No IPR available	unknown	Coil	Coil	coord: 115..135 scor
None	No IPR available	PANTHER	PTHR33083	FAMILY NOT NAMED	coord: 13..110 score: 2.4E-49coord: 131..185 score: 2.4
None	No IPR available	PANTHER	PTHR33083:SF4	SUBFAMILY NOT NAMED	coord: 13..110 score: 2.4E-49coord: 131..185 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013159	Csa7G211080	Cucumber (Chinese Long) v2	cumeB534
MELO3C013159	Cla016322	Watermelon (97103) v1	mewmB201
MELO3C013159	ClCG09G010840	Watermelon (Charleston Gray)	mewcgB180
MELO3C013159	Cla97C09G173580	Watermelon (97103) v2	mewmbB228
MELO3C013159	Bhi09G001383	Wax gourd	mewgoB255
MELO3C013159	CSPI07G09850	Wild cucumber (PI 183967)	cpimeB542
MELO3C013159	CmaCh01G011260	Cucurbita maxima (Rimu)	cmameB395
MELO3C013159	CmoCh01G011770	Cucurbita moschata (Rifu)	cmomeB386
MELO3C013159	CmoCh09G009540	Cucurbita moschata (Rifu)	cmomeB007
MELO3C013159	Lsi02G019000	Bottle gourd (USVL1VR-Ls)	lsimeB188
MELO3C013159	Cp4.1LG02g00920	Cucurbita pepo (Zucchini)	cpemeB503
MELO3C013159	Cp4.1LG06g08900	Cucurbita pepo (Zucchini)	cpemeB713
MELO3C013159	CsGy7G009330	Cucumber (Gy14) v2	cgybmeB472
MELO3C013159	Carg12825	Silver-seed gourd	carmeB0890
MELO3C013159	CsaV3_7G021860	Cucumber (Chinese Long) v3	cucmeB552

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013159	Cucumber (Gy14) v1	cgymeB136
MELO3C013159	Cucurbita maxima (Rimu)	cmameB018