MELO3C011581.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C011581.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr03 : 14664904 .. 14665326 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTGGCCAGCATGCAGTGGGTTCTGCTGGAACGATGATGTAAAATACATAATTACGGAGAAGCAAGTCGTCGATAACTGGGTTAGGGTAAGGAAAATAATCTAAATGTGACACTACTTGCGCATTGTACATTTAGTTTACAATTTCTGTATAAGTAGTTTTAAGTGGTCCTTTTTTTTTATGCAGTCGCATCCTGTAGCAAAGGACATCCTTAACAAATCCTTGCCGTATTACGACGAACTTGCATATGTGTTCGATCGAGATAGGGCGACGGGTCACTTTGTTGAGACATTCACCAACGTCGGGTTTAACGAGCCTAATGGGTATGAGGGGTTTGACATGTCGGATGGGAACAAAGAGTTTTCATCCTTGTACAGCCAAGGGATTGACATTTCCCAAGATGATGTACGTGCATCATGA

mRNA sequence

ATGCGGTGGCCAGCATGCAGTGGGTTCTGCTGGAACGATGATGTAAAATACATAATTACGGAGAAGCAAGTCGTCGATAACTGGGTTAGGTCGCATCCTGTAGCAAAGGACATCCTTAACAAATCCTTGCCGTATTACGACGAACTTGCATATGTGTTCGATCGAGATAGGGCGACGGGTCACTTTGTTGAGACATTCACCAACGTCGGGTTTAACGAGCCTAATGGGTATGAGGGGTTTGACATGTCGGATGGGAACAAAGAGTTTTCATCCTTGTACAGCCAAGGGATTGACATTTCCCAAGATGATGTACGTGCATCATGA

Coding sequence (CDS)

ATGCGGTGGCCAGCATGCAGTGGGTTCTGCTGGAACGATGATGTAAAATACATAATTACGGAGAAGCAAGTCGTCGATAACTGGGTTAGGTCGCATCCTGTAGCAAAGGACATCCTTAACAAATCCTTGCCGTATTACGACGAACTTGCATATGTGTTCGATCGAGATAGGGCGACGGGTCACTTTGTTGAGACATTCACCAACGTCGGGTTTAACGAGCCTAATGGGTATGAGGGGTTTGACATGTCGGATGGGAACAAAGAGTTTTCATCCTTGTACAGCCAAGGGATTGACATTTCCCAAGATGATGTACGTGCATCATGA

Protein sequence

MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS
Homology
[Close]
BLAST of MELO3C011581.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           M  PACSGF WND+ K I+ EK++ DNWVRS P AK +LN   PYYDEL YVF RDRATG
Sbjct: 401 MLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATG 460

Query: 61  HFVETFTNVGFNEP-NGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
            F ETF +VG NEP  GY+ FDM DGN++F  +YS+G+DI QDDVRAS
Sbjct: 461 RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDILQDDVRAS 508

[Close]
BLAST of MELO3C011581.2 vs. NCBI nr
Match: XP_008444620.1 (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 4.1e-30
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR P+CS F WND+ K II E  + DNWVR HPVAK +LNKS PYYDELAYVF +DRATG
Sbjct: 1   MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGN-KEFSSLYSQGIDISQDDVRA 107
             VETFT++G N+P+ YEGF   DGN  E  ++YSQG ++SQ+DV A
Sbjct: 61  RGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDVWA 107

[Close]
BLAST of MELO3C011581.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-22
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR P CSGF WND+ K I+ EK+V D+WV+SHP AK +LNKS  +YDEL+YVF +DRATG
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATG 138

Query: 61  HFVETFTNVGFNEPNGYEGFDM-SDGNKEFSSLYSQGIDISQDDV 105
              E+F ++G N+P GY+ F   +  + +F  +YS  +++S DD+
Sbjct: 139 GRAESFADIGSNDPPGYDAFAADAMPDTDFPPMYSLRLNMSPDDL 183

[Close]
BLAST of MELO3C011581.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 4.5e-21
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR P+CSGF WN++ + II E+ + D+W++SHP AK +L+KS PYYD+L+YVF +DRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  HFVETFTNVGFNEPNGY-EGFDMSDGNKE-FSSLYSQGIDISQDDV 105
              ETF NVG N  N + +   + D + E   ++YSQG+ +S D++
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEM 189

[Close]
BLAST of MELO3C011581.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 109.8 bits (273), Expect = 5.9e-21
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR P CSGF WND+ K I+ EK+V D+W  SHP AK +LNKS  +YDEL+YVF +DRATG
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATG 497

Query: 61  HFVETFTNVGFNEPNGYE-GFDMSDGNKEFSSLYSQGIDISQDDV 105
              E+F ++G N+P GY+ G   +  + +F  +YS G+++S DD+
Sbjct: 498 GRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDL 540

[Close]
BLAST of MELO3C011581.2 vs. TAIR10
Match: AT2G24960.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 6.1e-04
Identity = 18/56 (32.14%), Postives = 32/56 (57.14%), Query Frame = 0 

Query: 8   GFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVF--DRDRATGH 62
           GF W++    I  +  V D++++ HP+A+    KSLP Y++L  +F    ++ T H
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDH 300

[Close]
BLAST of MELO3C011581.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-33
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           M  PACSGF WND+ K I+ EK++ DNWVRS P AK +LN   PYYDEL YVF RDRATG
Sbjct: 401 MLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATG 460

Query: 61  HFVETFTNVGFNEP-NGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
            F ETF +VG NEP  GY+ FDM DGN++F  +YS+G+DI QDDVRAS
Sbjct: 461 RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDILQDDVRAS 508

[Close]
BLAST of MELO3C011581.2 vs. TrEMBL
Match: tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME (uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-30
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR P+CS F WND+ K II E  + DNWVR HPVAK +LNKS PYYDELAYVF +DRATG
Sbjct: 1   MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGN-KEFSSLYSQGIDISQDDVRA 107
             VETFT++G N+P+ YEGF   DGN  E  ++YSQG ++SQ+DV A
Sbjct: 61  RGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDVWA 107

[Close]
BLAST of MELO3C011581.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.3e-23
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR P CSGF WND+ K I+ EK+V D+WV+SHP AK +LNKS  +YDEL+YVF +DRATG
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATG 138

Query: 61  HFVETFTNVGFNEPNGYEGFDM-SDGNKEFSSLYSQGIDISQDDV 105
              E+F ++G N+P GY+ F   +  + +F  +YS  +++S DD+
Sbjct: 139 GRAESFADIGSNDPPGYDAFAADAMPDTDFPPMYSLRLNMSPDDL 183

[Close]
BLAST of MELO3C011581.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.0e-21
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR P+CSGF WN++ + II E+ + D+W++SHP AK +L+KS PYYD+L+YVF +DRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  HFVETFTNVGFNEPNGY-EGFDMSDGNKE-FSSLYSQGIDISQDDV 105
              ETF NVG N  N + +   + D + E   ++YSQG+ +S D++
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEM 189

[Close]
BLAST of MELO3C011581.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0 

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR P CSGF WND+ K I+ EK+V D+W  SHP AK +LNKS  +YDEL+YVF +DRATG
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATG 497

Query: 61  HFVETFTNVGFNEPNGYE-GFDMSDGNKEFSSLYSQGIDISQDDV 105
              E+F ++G N+P GY+ G   +  + +F  +YS G+++S DD+
Sbjct: 498 GRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDL 540

The following BLAST results are available for this feature:
BLAST of MELO3C011581.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33754.14.0e-3364.81retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008444620.14.1e-3062.62PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
XP_008466949.11.4e-2250.48PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
XP_008441954.14.5e-2148.11PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
ADN34114.15.9e-2150.48retrotransposon protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C011581.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24960.16.1e-0432.14unknown protein[more]
BLAST of MELO3C011581.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C011581.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GBB2|E5GBB2_CUCME2.6e-3364.81Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME2.7e-3062.62uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=... [more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME9.3e-2350.48uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME3.0e-2148.11uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME3.9e-2150.48Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011581.2.1MELO3C011581.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C011581.2Wax gourdmedwgoB347
MELO3C011581.2Cucumber (Gy14) v2cgybmedB413
MELO3C011581.2Cucumber (Gy14) v1cgymedB588
MELO3C011581.2Cucurbita maxima (Rimu)cmamedB761
MELO3C011581.2Cucurbita moschata (Rifu)cmomedB758
MELO3C011581.2Wild cucumber (PI 183967)cpimedB464
MELO3C011581.2Cucumber (Chinese Long) v2cumedB455
MELO3C011581.2Bottle gourd (USVL1VR-Ls)lsimedB496
MELO3C011581.2Watermelon (Charleston Gray)medwcgB296
MELO3C011581.2Watermelon (97103) v1medwmB304
MELO3C011581.2Cucumber (Chinese Long) v3cucmedB473
MELO3C011581.2Watermelon (97103) v2medwmbB297