MELO3C010513 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010513
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_196
Locationchr7 : 7844078 .. 7844395 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGACACGTCATACAGCGAAGGGGCTCCTTAACAAACTGTTTCCCTATTACGACGAATTTGCATATGTGTTCGAGAGGGATAGGACGACGGGTCACTTTACAAAGACGTTCGTCGATGTTGGGTCTAATGATCCTAGCGGGTACGAGGGGTTTCAAATGCCTGATGGAAATGATATGGAATTTCTCAGCATGTATAACCAAGGGTTTGACATGTCTCAGGATGATGTACGTGCTTTACTCCCTGCTCACACGTTAGAGGGTCGGGCCAGATCGAGTGAATCAAAACGACAGAGAAGGAGGGCAGCAGGTGGGTGA

mRNA sequence

ATGCAGACACGTCATACAGCGAAGGGGCTCCTTAACAAACTGTTTCCCTATTACGACGAATTTGCATATGTGTTCGAGAGGGATAGGACGACGGGTCACTTTACAAAGACGTTCGTCGATGTTGGGTCTAATGATCCTAGCGGGTACGAGGGGTTTCAAATGCCTGATGGAAATGATATGGAATTTCTCAGCATGTATAACCAAGGGTTTGACATGTCTCAGGATGATGTACGTGCTTTACTCCCTGCTCACACGTTAGAGGGTCGGGCCAGATCGAGTGAATCAAAACGACAGAGAAGGAGGGCAGCAGGTGGGTGA

Coding sequence (CDS)

ATGCAGACACGTCATACAGCGAAGGGGCTCCTTAACAAACTGTTTCCCTATTACGACGAATTTGCATATGTGTTCGAGAGGGATAGGACGACGGGTCACTTTACAAAGACGTTCGTCGATGTTGGGTCTAATGATCCTAGCGGGTACGAGGGGTTTCAAATGCCTGATGGAAATGATATGGAATTTCTCAGCATGTATAACCAAGGGTTTGACATGTCTCAGGATGATGTACGTGCTTTACTCCCTGCTCACACGTTAGAGGGTCGGGCCAGATCGAGTGAATCAAAACGACAGAGAAGGAGGGCAGCAGGTGGGTGA

Protein sequence

MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQRRRAAGG*
Homology
[Close]
BLAST of MELO3C010513 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 7   AKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDP-SGYEGFQMPDGNDMEFLSM 66
           AKGLLN  FPYYDE  YVF RDR TG F +TF DVGSN+P  GY+ F M DGN+ +F  +
Sbjct: 435 AKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPV 494

Query: 67  YNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           Y++G D+ QDDVRA  P+   EG+  SS SKR+R
Sbjct: 495 YSRGVDILQDDVRASRPSRASEGKTGSSGSKRKR 527

[Close]
BLAST of MELO3C010513 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 2   QTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDME 61
           QT   AKGLLNKLFPYYDE  YVFERDR TG   KTFV+V SNDP  YEGFQ PD NDM+
Sbjct: 276 QTHPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMK 335

Query: 62  FLSMYNQGFDMS 74
             +MY+QGF+MS
Sbjct: 336 NPTMYSQGFNMS 347

[Close]
BLAST of MELO3C010513 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1 

Query: 7   AKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEFLSMY 66
           AKGLLNK F +YDE +YVF +DR TG   ++F D+GSNDP GY+        D +F  MY
Sbjct: 470 AKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMY 529

Query: 67  NQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           + G +MS DD+     A   E R  SS SKR+R
Sbjct: 530 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKR 562

[Close]
BLAST of MELO3C010513 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-27
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 1 

Query: 5   HTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEFLS 64
           H++KGLLNK FPYYDE AY+F+RDRTT  F +TF D+GSN+P  YEGF M DGN+ EF S
Sbjct: 168 HSSKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE-EFSS 227

Query: 65  MYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           +Y+QG DMSQ+DV A  PAHT   RARSS  KR+R
Sbjct: 228 IYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKR 261

[Close]
BLAST of MELO3C010513 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 1 

Query: 7   AKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEFLSMY 66
           AK LLNK FPYYDE AYVF++DR TG   +TF D+GSNDPS YEGFQ PDGNDME  ++Y
Sbjct: 35  AKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIY 94

Query: 67  NQGFDMSQDDVRALLPAHTLEGRARSSESKR 98
           +QGF+MSQ+DV A  P+   + R RSS SKR
Sbjct: 95  SQGFNMSQEDVWAPRPSSASDSRTRSSGSKR 125

[Close]
BLAST of MELO3C010513 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-21
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 7   AKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDP-SGYEGFQMPDGNDMEFLSM 66
           AKGLLN  FPYYDE  YVF RDR TG F +TF DVGSN+P  GY+ F M DGN+ +F  +
Sbjct: 435 AKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPV 494

Query: 67  YNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           Y++G D+ QDDVRA  P+   EG+  SS SKR+R
Sbjct: 495 YSRGVDILQDDVRASRPSRASEGKTGSSGSKRKR 527

[Close]
BLAST of MELO3C010513 vs. NCBI nr
Match: gi|148270941|gb|ABQ53639.1| (transposase [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-20
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 2   QTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDME 61
           QT   AKGLLNKLFPYYDE  YVFERDR TG   KTFV+V SNDP  YEGFQ PD NDM+
Sbjct: 276 QTHPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMK 335

Query: 62  FLSMYNQGFDMS 74
             +MY+QGF+MS
Sbjct: 336 NPTMYSQGFNMS 347

[Close]
BLAST of MELO3C010513 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 7   AKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEFLSMY 66
           AKGLLNK FP+YDE +YVF +D  TG   ++F DVGSNDP+GY+ F     +D +F  MY
Sbjct: 64  AKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDFQPMY 123

Query: 67  NQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           ++G +MS D++     A   EGR  SS SK++R
Sbjct: 124 SRGLNMSPDELMGTRTARVSEGRYVSSGSKQKR 156

The following BLAST results are available for this feature:
BLAST of MELO3C010513 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME4.7e-2158.51Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5Y732_CUCME2.3e-2070.83Transposase OS=Cucumis melo PE=4 SV=1[more]
E5GCB5_CUCME2.5e-1448.39Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C010513 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093712|ref|XP_008447677.1|1.7e-2765.26PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo][more]
gi|659068476|ref|XP_008444620.1|1.2e-2564.84PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|6.7e-2158.51retrotransposon protein [Cucumis melo subsp. melo][more]
gi|148270941|gb|ABQ53639.1|3.3e-2070.83transposase [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|2.6e-1749.46PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010513T1MELO3C010513T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010513Cucumber (Chinese Long) v3cucmeB298
MELO3C010513Watermelon (97103) v2mewmbB472
MELO3C010513Wax gourdmewgoB602
MELO3C010513Cucurbita maxima (Rimu)cmameB036
MELO3C010513Cucurbita maxima (Rimu)cmameB433
MELO3C010513Cucurbita moschata (Rifu)cmomeB025
MELO3C010513Cucurbita moschata (Rifu)cmomeB423
MELO3C010513Wild cucumber (PI 183967)cpimeB292
MELO3C010513Cucumber (Chinese Long) v2cumeB298
MELO3C010513Watermelon (Charleston Gray)mewcgB462
MELO3C010513Watermelon (Charleston Gray)mewcgB504
MELO3C010513Watermelon (97103) v1mewmB544
MELO3C010513Cucurbita pepo (Zucchini)cpemeB539
MELO3C010513Cucurbita pepo (Zucchini)cpemeB730
MELO3C010513Bottle gourd (USVL1VR-Ls)lsimeB324
MELO3C010513Cucumber (Gy14) v2cgybmeB253
MELO3C010513Silver-seed gourdcarmeB0673
MELO3C010513Silver-seed gourdcarmeB1012