MELO3C003835 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003835
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionHTH-type transcriptional activator AmpR
Locationchr4 : 5299257 .. 5299496 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACATTTGGAGCAGGATACTGTGATTCTGAGGTCGGTATAGGATATTATGATTCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCATTCCATCAACTTCTTACATGCATGGACATGGACGTGGCTATGGGGGACATAACGAATATCTGTGTCATGAAGCACCTACAAAGGTACCAGATCTAGAGAAGGTACCAACAAGAACCAGAGAACCAAGAGGAGCTAGAACAACATAG

mRNA sequence

ATGCCAACATTTGGAGCAGGATACTGTGATTCTGAGGTCGGTATAGGATATTATGATTCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCATTCCATCAACTTCTTACATGCATGGACATGGACGTGGCTATGGGGGACATAACGAATATCTGTGTCATGAAGCACCTACAAAGGTACCAGATCTAGAGAAGGTACCAACAAGAACCAGAGAACCAAGAGGAGCTAGAACAACATAG

Coding sequence (CDS)

ATGCCAACATTTGGAGCAGGATACTGTGATTCTGAGGTCGGTATAGGATATTATGATTCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCATTCCATCAACTTCTTACATGCATGGACATGGACGTGGCTATGGGGGACATAACGAATATCTGTGTCATGAAGCACCTACAAAGGTACCAGATCTAGAGAAGGTACCAACAAGAACCAGAGAACCAAGAGGAGCTAGAACAACATAG

Protein sequence

MPTFGAGYCDSEVGIGYYDSGVGPSSSYMDVIPSTSYMHGHGRGYGGHNEYLCHEAPTKVPDLEKVPTRTREPRGARTT*
Homology
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BLAST of MELO3C003835 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-09
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 

Query: 1   MPTFGAGYCDSEVGI------GYYDSGVGPSSS-----YMDV--IPSTSYMHGHGRGYGG 60
           MPTFG  Y DS VG       GYY+S  G SS+     Y D+   PS+SYMHGHGRG G 
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 61  HNEYLCHEAPTKVPD 63
           HNEYL ++ P  VP+
Sbjct: 197 HNEYLYYKVPAAVPE 211

The following BLAST results are available for this feature:
BLAST of MELO3C003835 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|5.8e-0952.00PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003835T1MELO3C003835T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003835Silver-seed gourdcarmeB0106
MELO3C003835Silver-seed gourdcarmeB0409
MELO3C003835Silver-seed gourdcarmeB0928
MELO3C003835Silver-seed gourdcarmeB0956
MELO3C003835Cucumber (Chinese Long) v3cucmeB131
MELO3C003835Cucumber (Chinese Long) v3cucmeB219
MELO3C003835Cucumber (Chinese Long) v3cucmeB498
MELO3C003835Watermelon (97103) v2mewmbB315
MELO3C003835Watermelon (97103) v2mewmbB332
MELO3C003835Watermelon (97103) v2mewmbB354
MELO3C003835Wax gourdmewgoB384
MELO3C003835Wax gourdmewgoB425
MELO3C003835Melon (DHL92) v3.5.1memeB118
MELO3C003835Melon (DHL92) v3.5.1memeB145
MELO3C003835Cucumber (Gy14) v1cgymeB202
MELO3C003835Cucumber (Gy14) v1cgymeB390
MELO3C003835Cucumber (Gy14) v1cgymeB559
MELO3C003835Cucurbita maxima (Rimu)cmameB032
MELO3C003835Cucurbita maxima (Rimu)cmameB167
MELO3C003835Cucurbita maxima (Rimu)cmameB424
MELO3C003835Cucurbita maxima (Rimu)cmameB603
MELO3C003835Cucurbita maxima (Rimu)cmameB731
MELO3C003835Cucurbita moschata (Rifu)cmomeB021
MELO3C003835Cucurbita moschata (Rifu)cmomeB156
MELO3C003835Cucurbita moschata (Rifu)cmomeB414
MELO3C003835Cucurbita moschata (Rifu)cmomeB592
MELO3C003835Cucurbita moschata (Rifu)cmomeB721
MELO3C003835Wild cucumber (PI 183967)cpimeB129
MELO3C003835Wild cucumber (PI 183967)cpimeB215
MELO3C003835Wild cucumber (PI 183967)cpimeB488
MELO3C003835Cucumber (Chinese Long) v2cumeB127
MELO3C003835Cucumber (Chinese Long) v2cumeB222
MELO3C003835Cucumber (Chinese Long) v2cumeB485
MELO3C003835Watermelon (Charleston Gray)mewcgB326
MELO3C003835Watermelon (Charleston Gray)mewcgB331
MELO3C003835Watermelon (Charleston Gray)mewcgB352
MELO3C003835Watermelon (97103) v1mewmB351
MELO3C003835Watermelon (97103) v1mewmB368
MELO3C003835Watermelon (97103) v1mewmB378
MELO3C003835Cucurbita pepo (Zucchini)cpemeB056
MELO3C003835Cucurbita pepo (Zucchini)cpemeB095
MELO3C003835Cucurbita pepo (Zucchini)cpemeB516
MELO3C003835Cucurbita pepo (Zucchini)cpemeB726
MELO3C003835Cucurbita pepo (Zucchini)cpemeB766
MELO3C003835Bottle gourd (USVL1VR-Ls)lsimeB142
MELO3C003835Bottle gourd (USVL1VR-Ls)lsimeB311
MELO3C003835Bottle gourd (USVL1VR-Ls)lsimeB480
MELO3C003835Cucumber (Gy14) v2cgybmeB111
MELO3C003835Cucumber (Gy14) v2cgybmeB185
MELO3C003835Cucumber (Gy14) v2cgybmeB427