Lsi11G009510 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G009510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Mitotic-spindle organizing protein 1B
Location	chr11 : 14270782 .. 14270997 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTAGAGGCTGCACGAACCGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACTCGATGCTGGGATTGATCGCCACACCCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCATTGGCTGCTGTTGTCAAGGAACTACGCCGGGAGCCACCCTCATCAGAGACCGTCGTCTCCAGTAACAAGTCATAA

mRNA sequence

ATGGATCTAGAGGCTGCACGAACCGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACTCGATGCTGGGATTGATCGCCACACCCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCATTGGCTGCTGTTGTCAAGGAACTACGCCGGGAGCCACCCTCATCAGAGACCGTCGTCTCCAGTAACAAGTCATAA

Coding sequence (CDS)

ATGGATCTAGAGGCTGCACGAACCGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACTCGATGCTGGGATTGATCGCCACACCCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCATTGGCTGCTGTTGTCAAGGAACTACGCCGGGAGCCACCCTCATCAGAGACCGTCGTCTCCAGTAACAAGTCATAA

Protein sequence

MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPPSSETVVSSNKS

Homology

[Close]

BLAST of Lsi11G009510 vs. Swiss-Prot
Match: MZT1B_ARATH (Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.0e-20
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREP- 60
          MD EA+RTARESL+L F MSN+LD G+DRHTLSVLIALCD+GVNPEALA VVKELRRE  
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRESI 60

Query: 61 PSSETVVSS 69
          P S T   S
Sbjct: 61 PDSVTTTPS 69

[Close]

BLAST of Lsi11G009510 vs. Swiss-Prot
Match: MZT1A_ARATH (Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana GN=GIP2 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-18
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          M+ EAA TARESL+L F MSN+L+ G+DRHTLSVLIALCD+G+NPEALA +VKELRR+  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 61 SSETVV 67
          ++ T V
Sbjct: 61 TTTTTV 66

[Close]

BLAST of Lsi11G009510 vs. Swiss-Prot
Match: MZT1_PICSI (Mitotic-spindle organizing protein 1 OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-17
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRRE 59
          MD  AA+ ARESLDLAF +SN L  G+DRHTLS+LIALC+ GVNPEALAAVVKELRRE
Sbjct: 1  MDRTAAQNARESLDLAFSISNFLQTGLDRHTLSILIALCEHGVNPEALAAVVKELRRE 58

[Close]

BLAST of Lsi11G009510 vs. Swiss-Prot
Match: MZT1_TAEGU (Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata GN=mzt1 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-09
Identity = 24/48 (50.00%), Postives = 39/48 (81.25%), Query Frame = 1


Query: 10 RESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRR 58
          RE++D+ F +S +L+ G+D  TLS+ + LC+ G+NPEAL++V+KELR+
Sbjct: 12 RETMDVLFEISRILNTGLDMETLSICVRLCEQGINPEALSSVIKELRK 59

[Close]

BLAST of Lsi11G009510 vs. Swiss-Prot
Match: MZT1_XENTR (Mitotic-spindle organizing protein 1 OS=Xenopus tropicalis GN=mzt1 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 28/62 (45.16%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 10 RESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPPSSETVVSSN 69
          RE++D+   +S +L+ G+D  TLS+ + LC+ G+NPEAL++V+KELRR   +SET+ +S 
Sbjct: 12 RETMDVLLEISRLLNTGLDMETLSICVRLCEQGINPEALSSVIKELRR---ASETLKASE 70

Query: 70 KS 72
           +
Sbjct: 72 ST 70

[Close]

BLAST of Lsi11G009510 vs. TrEMBL
Match: A0A0A0LMZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094370 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-28
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETVVSSNKS 72
          SS+T+VSSNKS
Sbjct: 61 SSDTIVSSNKS 71

[Close]

BLAST of Lsi11G009510 vs. TrEMBL
Match: A0A0D2TES9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G288400 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.8e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+G+NPEALAAVVKEL+REPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 61 SSETVVSSN 70
           S  + SS+
Sbjct: 61 PSTPLSSSS 69

[Close]

BLAST of Lsi11G009510 vs. TrEMBL
Match: A0A0B2PDD0_GLYSO (Mitotic-spindle organizing protein 1B OS=Glycine soja GN=glysoja_038443 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-21
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+GVNPEALAAVVKELR+E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Lsi11G009510 vs. TrEMBL
Match: C6T5S8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G068900 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-21
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+GVNPEALAAVVKELR+E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Lsi11G009510 vs. TrEMBL
Match: I1J6X9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G100100 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-21
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+GVNPEALAAVVKELR+E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Lsi11G009510 vs. TAIR10
Match: AT4G09550.1 (AT4G09550.1 AtGCP3 interacting protein 1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-21
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREP- 60
          MD EA+RTARESL+L F MSN+LD G+DRHTLSVLIALCD+GVNPEALA VVKELRRE  
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRESI 60

Query: 61 PSSETVVSS 69
          P S T   S
Sbjct: 61 PDSVTTTPS 69

[Close]

BLAST of Lsi11G009510 vs. TAIR10
Match: AT1G73790.1 (AT1G73790.1 Protein of unknown function (DUF3743))

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-19
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          M+ EAA TARESL+L F MSN+L+ G+DRHTLSVLIALCD+G+NPEALA +VKELRR+  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 61 SSETVV 67
          ++ T V
Sbjct: 61 TTTTTV 66

[Close]

BLAST of Lsi11G009510 vs. NCBI nr
Match: gi|778668078|ref|XP_011649034.1| (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 5.0e-28
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETVVSSNKS 72
          SS+T+VSSNKS
Sbjct: 61 SSDTIVSSNKS 71

[Close]

BLAST of Lsi11G009510 vs. NCBI nr
Match: gi|659082266|ref|XP_008441751.1| (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNVLD+GIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDSGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETVVSSNKS 72
          SSET VSSNKS
Sbjct: 61 SSETNVSSNKS 71

[Close]

BLAST of Lsi11G009510 vs. NCBI nr
Match: gi|823215102|ref|XP_012440309.1| (PREDICTED: mitotic-spindle organizing protein 1B-like [Gossypium raimondii])

HSP 1 Score: 111.3 bits (277), Expect = 7.0e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+G+NPEALAAVVKEL+REPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 61 SSETVVSSN 70
           S  + SS+
Sbjct: 61 PSTPLSSSS 69

[Close]

BLAST of Lsi11G009510 vs. NCBI nr
Match: gi|763785935|gb|KJB53006.1| (hypothetical protein B456_008G288400 [Gossypium raimondii])

HSP 1 Score: 111.3 bits (277), Expect = 7.0e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+G+NPEALAAVVKEL+REPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 61 SSETVVSSN 70
           S  + SS+
Sbjct: 61 PSTPLSSSS 69

[Close]

BLAST of Lsi11G009510 vs. NCBI nr
Match: gi|356504256|ref|XP_003520913.1| (PREDICTED: mitotic-spindle organizing protein 1B [Glycine max])

HSP 1 Score: 108.6 bits (270), Expect = 4.5e-21
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MDLEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+GVNPEALAAVVKELR+E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 61 S 62
          S
Sbjct: 61 S 61

The following BLAST results are available for this feature:

BLAST of Lsi11G009510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MZT1B_ARATH	5.0e-20	75.36	Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1	[more]
MZT1A_ARATH	2.7e-18	68.18	Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana GN=GIP2 PE=1 SV=1	[more]
MZT1_PICSI	2.3e-17	77.59	Mitotic-spindle organizing protein 1 OS=Picea sitchensis PE=3 SV=1	[more]
MZT1_TAEGU	6.7e-09	50.00	Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata GN=mzt1 PE=3 SV=1	[more]
MZT1_XENTR	1.2e-08	45.16	Mitotic-spindle organizing protein 1 OS=Xenopus tropicalis GN=mzt1 PE=3 SV=1	[more]

BLAST of Lsi11G009510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMZ6_CUCSA	3.5e-28	95.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094370 PE=4 SV=1	[more]
A0A0D2TES9_GOSRA	4.8e-22	81.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G288400 PE=4 SV=1	[more]
A0A0B2PDD0_GLYSO	3.1e-21	88.52	Mitotic-spindle organizing protein 1B OS=Glycine soja GN=glysoja_038443 PE=4 SV=...	[more]
C6T5S8_SOYBN	3.1e-21	88.52	Uncharacterized protein OS=Glycine max GN=GLYMA_03G068900 PE=2 SV=1	[more]
I1J6X9_SOYBN	3.1e-21	88.52	Uncharacterized protein OS=Glycine max GN=GLYMA_01G100100 PE=4 SV=1	[more]

BLAST of Lsi11G009510 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09550.1	2.8e-21	75.36	AtGCP3 interacting protein 1	[more]
AT1G73790.1	1.5e-19	68.18	Protein of unknown function (DUF3743)	[more]

BLAST of Lsi11G009510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778668078\|ref\|XP_011649034.1\|	5.0e-28	95.77	PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis sativus]	[more]
gi\|659082266\|ref\|XP_008441751.1\|	2.5e-27	95.77	PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo]	[more]
gi\|823215102\|ref\|XP_012440309.1\|	7.0e-22	81.16	PREDICTED: mitotic-spindle organizing protein 1B-like [Gossypium raimondii]	[more]
gi\|763785935\|gb\|KJB53006.1\|	7.0e-22	81.16	hypothetical protein B456_008G288400 [Gossypium raimondii]	[more]
gi\|356504256\|ref\|XP_003520913.1\|	4.5e-21	88.52	PREDICTED: mitotic-spindle organizing protein 1B [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0033566	gamma-tubulin complex localization

Vocabulary: **Cellular Component**
Term	Definition
GO:0008274	gamma-tubulin ring complex

Vocabulary: **INTERPRO**
Term	Definition
IPR022214	MZT1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033566	gamma-tubulin complex localization
cellular_component	GO:0008274	gamma-tubulin ring complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G009510.1	Lsi11G009510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022214	Mitotic-spindle organizing protein 1	PANTHER	PTHR28520	FAMILY NOT NAMED	coord: 1..68 score: 8.5
IPR022214	Mitotic-spindle organizing protein 1	PFAM	PF12554	MOZART1	coord: 10..56 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G009510	Melon (DHL92) v3.6.1	lsimedB125
Lsi11G009510	Silver-seed gourd	carlsiB975
Lsi11G009510	Cucumber (Chinese Long) v3	cuclsiB108
Lsi11G009510	Watermelon (97103) v2	lsiwmbB075
Lsi11G009510	Watermelon (97103) v2	lsiwmbB078
Lsi11G009510	Wax gourd	lsiwgoB111
Lsi11G009510	Cucumber (Gy14) v1	cgylsiB324
Lsi11G009510	Cucurbita maxima (Rimu)	cmalsiB404
Lsi11G009510	Cucurbita maxima (Rimu)	cmalsiB709
Lsi11G009510	Cucurbita moschata (Rifu)	cmolsiB389
Lsi11G009510	Cucurbita moschata (Rifu)	cmolsiB703
Lsi11G009510	Cucurbita pepo (Zucchini)	cpelsiB077
Lsi11G009510	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G009510	Cucumber (Chinese Long) v2	culsiB098
Lsi11G009510	Melon (DHL92) v3.5.1	lsimeB117
Lsi11G009510	Watermelon (Charleston Gray)	lsiwcgB086
Lsi11G009510	Watermelon (Charleston Gray)	lsiwcgB083
Lsi11G009510	Watermelon (97103) v1	lsiwmB113
Lsi11G009510	Watermelon (97103) v1	lsiwmB119
Lsi11G009510	Cucumber (Gy14) v2	cgyblsiB089