Lsi10G012350 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi10G012350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 16618336 .. 16621002 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTTATAATTCGTGTGGCTGTCAGAAGCCGCGTCTCTTTTTCTCTGAAAAGGATTTGATTGGGCTTGGCCCACTTTTATCGGGTCAGTTTCAACTTCAACCCAATTGCTTTTCTTTTTTATACCTTACATCACTTTTTTGTTCTTTGGTATTTAATTTATATATATATATATATATATATTTAGATTAAAAATTACTTTTGGTCTTGACATTGAGTAATTTCAAAAGGGCTAAAATATCTTTTGTCATTTTCAAAAATACCGTGAAATAAGTTTTTAATCCTTCAAAACTAATTTTGATGATTGAAAATTACATTTAAAAATGTAAAATTGAAAATTAAATTGATTTTGAGTGATTAGAGTGTGTTTTTTAGTGATTTTAAAAATGACAGAAGTGATTTTAACGATTTTAAAATCACTCCCAAACATGTTCAAAAAAGCAACAATTTAGTCTATATGTTAATTTATGTACTTTAAACTTTATAATAATCATTGTATTTTAATATGTAACAGTTTAGTTTTTATATTTTCAAATGGTAACAATTTAGTGTCTATCTTTGACCTTTAATCAGTTTTTAGTCTGTAAATTAAAAAATTTCACTAAATTTTAATATCATTATTTTAATAATAAGGACCAAATTATTAAAAATTGAAAAATACAAAAACTAAATTGATATTTATTAAAATTTGGGATAAAAATGATTTTAAAACTATATTTATTACTTATAGGAAAATTATTTAAAATATTTTCAGATTAAAGAATTGATATCCTATATTTAAATTAAAATGTTTTCTTAGTTAAGCTGATTACTTGTATAAATATTCTAACTGTGTTTTGATCCTTTTAAATATTCAAATTGAAAACATTTACTCAACTAATTATGGAGTATAATTCAACCTTTAACTATATTCAAATTGGTTAAAAATAAATAGAAACGACTGTAAACGTGTAACATTTTATTGATATAGTGTATGGTTTACAATTAAGATACATAGGATATAAATATACAAAGAAAGATAATTAAATCTAAATGAGCAAATAAGGAAACAACTAAATGAGCCTAAGATCTTATTAATTTATAACTCACCTAATATATATATGGTAACACCCTCTCTCAAACTCGAGGTGGTAAGTTAGAGATCAACTTGAATTTGTGAAGTAACTGAGTGAAGTGTTCGAACGATAGTGCTTTATTGAATATATCAACGGGTTGCTCTATAGTGGAGATGGGTCGTTGGAGGAGAGTATTCTTAGGAGATGATGATAAACAAAGTGTTCAGATTTTGTGCTGGAACGAGAGACAACAATTTGTTTCTTATTTCGTCAAGAGATGAGAGAATCACCTAAGTAGAAGCAGTAACCTGTGGTAGACCGTCCATCAGTGGGATCACCAGCCCAATTAGCAGCAAAGTAGCCAAATAACACTGCGGACGACTGTGAAGAAAACATAAGTTTATGGTCAAGAGTGTCATTGCTATAGCGTAGAATGTGAAGAACATCAGTAAAGTGGATAGACTGAGGAGCAGCAATAATTATTGAATTTTCACATCTAACGATTTGGTTATGTAGTTTTAAATTTATAATAATTATTGAATTTTAACATGTAACAATTTAGTCCGTATTATTTTCAAATTTGTAACAATTTAGTGTCTATCGTGAAAAATCTCATAATAAATTTTGATTATGTAAGGACTTAGTCCTTATAATTTATAAATATATTTGACCCTTAATCAGTTTATCAATTTATATGTATTAGAAATTTCACTAAATTTTAAATAATAAGGACTAAATCATTACCATTGAAAAGTAAAAGGACTGAATTGATATTTATTAGAGTTTGGGATAAAAATGATTTTTAAACTATATTTTATTACTCACAGGAAAATTATTAAGTATATTTTCAGATTAAAGAATTAATAGCCTACATTTAAATTAAAATGTTTTCTTAGTTAAGCTGGTTACTTGTATTAATATTCTAACTGTATAATCCATTTAAATATTCAAATTGAAAAGATTTACTCAACTAAATATGGAGTATAATTCAACATTGAGTGGAGGTGAAAATCCCAACCTCAACCTCTAGCTATATTCAAATTGGTTATAACTAAATATAAACAAAATATATATATATATATAATTGAAAATTTATTAAATCAATTAAAACATTGTACATATATCTAATTTATGAATTATCTTGAAATTTAAAGATGAATAAATCACTGTTTCATCCGGATCCGAAAATGCCTCTTTTTGTTTCAATAGTGGCGGCGGAGTTCCGGCGGAGTCCGCCAATTGTTGGGGGAGGAAGTGGGGCGGCCACGGCGGCAATCACAAGAGAAGAGAGAAGGGGAGAGAAATTAAAAAAAGAAAAAAAGAAAAAAAAAAGTGAAATGCCACCTCATAACACAAATGATATTAAGTTTTCACAATAATTTTTAATTCCATTCCTACTAATTAAAATAAATTAATATGTGATCGGTACGATAGGCATTCACGATAGCGCATAATAGTCTAATATGTATTCTATTAATTTAAAGTTACGGCATAAGCCATTTAAAAATTATTTGTAAATGAGAGTGTTTGTTTTAAAATTTCAGGAACTTTTAAATCTCAAAGACCAAATGTTCATTTTGTCCGAGAGAGAAATAAGAAAGAAGAAAATAAG

mRNA sequence

TTCTTTTATAATTCGTGTGGCTGTCAGAAGCCGCGTCTCTTTTTCTCTGAAAAGGATTTGATTGGGCTTGGCCCACTTTTATCGGTGGCGGCGGAGTTCCGGCGGAGTCCGCCAATTGTTGGGGGAGGAAGTGGGGCGGCCACGGCGGCAATCACAAGAGAAGAGAGAAGGGGAGAGAAATTAAAAAAAGAAAAAAAGAAAAAAAAAAGAACTTTTAAATCTCAAAGACCAAATGTTCATTTTGTCCGAGAGAGAAATAAGAAAGAAGAAAATAAG

Coding sequence (CDS)

TTCTTTTATAATTCGTGTGGCTGTCAGAAGCCGCGTCTCTTTTTCTCTGAAAAGGATTTGATTGGGCTTGGCCCACTTTTATCGGTGGCGGCGGAGTTCCGGCGGAGTCCGCCAATTGTTGGGGGAGGAAGTGGGGCGGCCACGGCGGCAATCACAAGAGAAGAGAGAAGGGGAGAGAAATTAAAAAAAGAAAAAAAGAAAAAAAAAAGAACTTTTAAATCTCAAAGACCAAATGTTCATTTTGTCCGAGAGAGAAATAAGAAAGAAGAAAATAAG

Protein sequence

FFYNSCGCQKPRLFFSEKDLIGLGPLLSVAAEFRRSPPIVGGGSGAATAAITREERRGEKLKKEKKKKKRTFKSQRPNVHFVRERNKKEENK
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G012350.1Lsi10G012350.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 51..71
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G012350Silver-seed gourdcarlsiB222
Lsi10G012350Silver-seed gourdcarlsiB303
Lsi10G012350Silver-seed gourdcarlsiB838
Lsi10G012350Cucumber (Chinese Long) v3cuclsiB177
Lsi10G012350Cucumber (Chinese Long) v3cuclsiB439
Lsi10G012350Cucumber (Chinese Long) v3cuclsiB444
Lsi10G012350Watermelon (97103) v2lsiwmbB040
Lsi10G012350Watermelon (97103) v2lsiwmbB052
Lsi10G012350Watermelon (97103) v2lsiwmbB067
Lsi10G012350Wax gourdlsiwgoB059
Lsi10G012350Wax gourdlsiwgoB070
Lsi10G012350Wax gourdlsiwgoB087
Lsi10G012350Wax gourdlsiwgoB095
Lsi10G012350Bottle gourd (USVL1VR-Ls)lsilsiB040
Lsi10G012350Bottle gourd (USVL1VR-Ls)lsilsiB025
Lsi10G012350Cucumber (Gy14) v1cgylsiB493
Lsi10G012350Cucumber (Gy14) v1cgylsiB624
Lsi10G012350Cucurbita maxima (Rimu)cmalsiB227
Lsi10G012350Cucurbita maxima (Rimu)cmalsiB506
Lsi10G012350Cucurbita maxima (Rimu)cmalsiB540
Lsi10G012350Cucurbita maxima (Rimu)cmalsiB744
Lsi10G012350Cucurbita moschata (Rifu)cmolsiB185
Lsi10G012350Cucurbita moschata (Rifu)cmolsiB215
Lsi10G012350Cucurbita moschata (Rifu)cmolsiB490
Lsi10G012350Cucurbita moschata (Rifu)cmolsiB525
Lsi10G012350Cucurbita moschata (Rifu)cmolsiB736
Lsi10G012350Cucurbita pepo (Zucchini)cpelsiB219
Lsi10G012350Cucurbita pepo (Zucchini)cpelsiB389
Lsi10G012350Cucurbita pepo (Zucchini)cpelsiB487
Lsi10G012350Cucurbita pepo (Zucchini)cpelsiB602
Lsi10G012350Wild cucumber (PI 183967)cpilsiB160
Lsi10G012350Wild cucumber (PI 183967)cpilsiB415
Lsi10G012350Cucumber (Chinese Long) v2culsiB161
Lsi10G012350Cucumber (Chinese Long) v2culsiB412
Lsi10G012350Melon (DHL92) v3.5.1lsimeB070
Lsi10G012350Melon (DHL92) v3.5.1lsimeB040
Lsi10G012350Melon (DHL92) v3.5.1lsimeB055
Lsi10G012350Watermelon (Charleston Gray)lsiwcgB037
Lsi10G012350Watermelon (Charleston Gray)lsiwcgB054
Lsi10G012350Watermelon (97103) v1lsiwmB048
Lsi10G012350Watermelon (97103) v1lsiwmB064
Lsi10G012350Watermelon (97103) v1lsiwmB078
Lsi10G012350Cucumber (Gy14) v2cgyblsiB146
Lsi10G012350Cucumber (Gy14) v2cgyblsiB377
Lsi10G012350Cucumber (Gy14) v2cgyblsiB384
Lsi10G012350Melon (DHL92) v3.6.1lsimedB055
Lsi10G012350Melon (DHL92) v3.6.1lsimedB072
Lsi10G012350Melon (DHL92) v3.6.1lsimedB078