Lsi10G008280 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G008280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	C2H2 type zinc finger transcription factor family
Location	chr10 : 11636937 .. 11637452 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

mRNA sequence

ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

Coding sequence (CDS)

ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

Protein sequence

MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAGRGTVEDYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN

Homology

[Close]

BLAST of Lsi10G008280 vs. Swiss-Prot
Match: ZAT3_ARATH (Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-26
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 22  NPRRKRTKFIKTTTSGT----GKPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRC 81
           +P++KRTK + +++S +     KP    K  PN   IT PC+ECG+KFWSWKALFGHMRC
Sbjct: 39  SPKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRC 98

Query: 82  HPERQWRGINPPPNFLRPFAATELQ--------------QDHDIAASLIMLANASPDA 120
           HPERQWRGINPPPN+  P AA+  Q              +DH++A+ L+ML+N +P +
Sbjct: 99  HPERQWRGINPPPNYRVPTAASSKQLNQILPNWVSFMSEEDHEVASCLLMLSNGTPSS 156

[Close]

BLAST of Lsi10G008280 vs. Swiss-Prot
Match: ZAT2_ARATH (Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-20
Identity = 59/139 (42.45%), Postives = 76/139 (54.68%), Query Frame = 1


Query: 2   DSPLFSFNVFPSTSTTNSTSNPRRKRTKFIK-----TTTSGTGKPTKQAKKAPNNITPPC 61
           D P  S NV    +  +   NPRRKRTK        +++S   KP  Q     + I  PC
Sbjct: 12  DIPFASSNV----TLPSYNQNPRRKRTKLTNNEVGSSSSSPRPKPVTQPDPDASQIARPC 71

Query: 62  SECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATEL---------QQDHDIAA 121
           +ECGK+F S KALFGHMRCHPERQWRGINPP NF R   +            +++H+IA+
Sbjct: 72  TECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPSEEEHNIAS 131

Query: 122 SLIMLANASPDAGRGTVED 127
            L+M+AN         VE+
Sbjct: 132 CLLMMANGDVPTRSSEVEE 146

[Close]

BLAST of Lsi10G008280 vs. TrEMBL
Match: A0A0A0KAW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118360 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 123/179 (68.72%), Postives = 134/179 (74.86%), Query Frame = 1


Query: 1   MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECG 60
           MD PLFSFN   S++TTNS    RRK TKFIKTTT      T      P+NITPPCSECG
Sbjct: 1   MDLPLFSFNAQRSSTTTNS----RRKPTKFIKTTTLNNASAT------PHNITPPCSECG 60

Query: 61  KKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAG 120
           KKF SWKALFGHMRCHPERQWRGINPPP FL P +A +L  DH+IA SLIML+NA PD G
Sbjct: 61  KKFCSWKALFGHMRCHPERQWRGINPPPIFLHPPSAAQL--DHEIATSLIMLSNAPPDPG 120

Query: 121 RGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN 172
           RGT E        ++KPR +SG+LDLNL   PPPMEEIEQESSS YSSGIVLDLRLGLN
Sbjct: 121 RGTSEGREAVVVCEHKPRAHSGLLDLNL---PPPMEEIEQESSSPYSSGIVLDLRLGLN 164

[Close]

BLAST of Lsi10G008280 vs. TrEMBL
Match: A0A0D2Q9Q5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206600 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 69/140 (49.29%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 6   FSFNVFPSTSTTNSTSNPRRKRTKFIK----------TTTSGTGKPTKQAKKAPNNITPP 65
           F  +V     T N    PR+KRTK +K          +TT    K TK+   A   IT P
Sbjct: 13  FLSSVTQHNVTVNYDPKPRKKRTKVVKVDVGQFPTCSSTTVSRPKYTKKPDPAAPKITRP 72

Query: 66  CSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATE------LQQDHDIAASL 125
           C+ECGKKFWSWKALFGHMRCHPERQWRGINPPPN+ RP            + DH+IAASL
Sbjct: 73  CTECGKKFWSWKALFGHMRCHPERQWRGINPPPNYCRPVKPASNVETLMTEDDHEIAASL 132

Query: 126 IMLANASPDAGRGTVEDYKP 130
           +MLAN S  +       Y+P
Sbjct: 133 LMLANGSTASESECGTSYRP 152

[Close]

BLAST of Lsi10G008280 vs. TrEMBL
Match: U5GMX5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s21520g PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 66/133 (49.62%), Postives = 79/133 (59.40%), Query Frame = 1


Query: 4   PLFSFNVFPSTSTTNSTSNPRRKRTKFIKTT-----TSGTGKPTKQAKKAPN--NITPPC 63
           P F      S  TT    NPR+KRTK IK       +S   KP    K  P+   IT PC
Sbjct: 10  PDFGLPSSSSIPTTYYHQNPRKKRTKLIKIEPSLLPSSTISKPKYYKKPDPSAPKITRPC 69

Query: 64  SECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATEL--------------QQD 116
           +ECGKKFWSWKALFGHMRCHPERQWRGINPPPN+ RP +  +L               +D
Sbjct: 70  TECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVSPIQLLSIVSSTNWEDMLTAED 129

[Close]

BLAST of Lsi10G008280 vs. TrEMBL
Match: A0A067FLN6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038358mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 62/119 (52.10%), Postives = 72/119 (60.50%), Query Frame = 1


Query: 25  RKRTKFIKTTTSGTG-------KPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRC 84
           +KR+K IK   S T        KP    K  P    IT PCSECGKKFWSWKALFGHMRC
Sbjct: 41  KKRSKLIKIDASATSSCSASVSKPKYAKKPDPGAPKITRPCSECGKKFWSWKALFGHMRC 100

Query: 85  HPERQWRGINPPPNFLRPFAATE---------LQQDHDIAASLIMLANASPDAGRGTVE 126
           HPERQWRGINPPPNF RP +  +           +DH++AA L+MLAN     G G+ +
Sbjct: 101 HPERQWRGINPPPNFRRPASPVKEVTSVENVMTVEDHEVAACLLMLANGDVGVGTGSFQ 159

[Close]

BLAST of Lsi10G008280 vs. TrEMBL
Match: A0A0D2PZN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G259000 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 22  NPRRKRTKFIKTTTSG---------TGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGH 81
           N ++KR+K +K  T+G           K TK+   +   ITPPCSECGKKFWSWKALFGH
Sbjct: 30  NHKKKRSKSMKVDTTGFPNSSSPVSRPKYTKKPDPSAPKITPPCSECGKKFWSWKALFGH 89

Query: 82  MRCHPERQWRGINPPPNFLRPFA---------ATELQQDHDIAASLIMLANAS 117
           MRCHPERQWRGINPPP + RP +         ++  ++DH IAASL+MLAN +
Sbjct: 90  MRCHPERQWRGINPPPKYRRPVSPVKEMNDIESSMTEEDHVIAASLLMLANGT 142

[Close]

BLAST of Lsi10G008280 vs. TAIR10
Match: AT4G35280.1 (AT4G35280.1 C2H2-like zinc finger protein)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-27
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 22  NPRRKRTKFIKTTTSGT----GKPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRC 81
           +P++KRTK + +++S +     KP    K  PN   IT PC+ECG+KFWSWKALFGHMRC
Sbjct: 39  SPKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRC 98

Query: 82  HPERQWRGINPPPNFLRPFAATELQ--------------QDHDIAASLIMLANASPDA 120
           HPERQWRGINPPPN+  P AA+  Q              +DH++A+ L+ML+N +P +
Sbjct: 99  HPERQWRGINPPPNYRVPTAASSKQLNQILPNWVSFMSEEDHEVASCLLMLSNGTPSS 156

[Close]

BLAST of Lsi10G008280 vs. TAIR10
Match: AT2G17180.1 (AT2G17180.1 C2H2-like zinc finger protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 59/139 (42.45%), Postives = 76/139 (54.68%), Query Frame = 1


Query: 2   DSPLFSFNVFPSTSTTNSTSNPRRKRTKFIK-----TTTSGTGKPTKQAKKAPNNITPPC 61
           D P  S NV    +  +   NPRRKRTK        +++S   KP  Q     + I  PC
Sbjct: 12  DIPFASSNV----TLPSYNQNPRRKRTKLTNNEVGSSSSSPRPKPVTQPDPDASQIARPC 71

Query: 62  SECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATEL---------QQDHDIAA 121
           +ECGK+F S KALFGHMRCHPERQWRGINPP NF R   +            +++H+IA+
Sbjct: 72  TECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPSEEEHNIAS 131

Query: 122 SLIMLANASPDAGRGTVED 127
            L+M+AN         VE+
Sbjct: 132 CLLMMANGDVPTRSSEVEE 146

[Close]

BLAST of Lsi10G008280 vs. TAIR10
Match: AT2G26940.1 (AT2G26940.1 C2H2-type zinc finger family protein)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-09
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 56  CSECGKKFWSWKALFGHMRCHPERQWRGINPPP-------NFLRPFAATELQQDHDIAAS 115
           C  CGK+F +  +LFGHMR HP+R W+GI PPP       ++L      E + D D+ + 
Sbjct: 121 CCLCGKEFQTMHSLFGHMRRHPDRTWKGIRPPPPSEKFNLSYLDDDVDDEDEDDDDVMSR 180

Query: 116 LIMLANASPD 119
            +M+++   D
Sbjct: 181 SMMMSDVPED 190

[Close]

BLAST of Lsi10G008280 vs. TAIR10
Match: AT4G35610.1 (AT4G35610.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 1


Query: 19  STSNPRRKRTKFIKTTTSGTG---------KPTKQAKKA--PNNITPPCSECGKKFWSWK 78
           S S  ++K    I T T   G         KP K+AK+   P    P C  CG+ F SWK
Sbjct: 92  SGSGGKKKSRPRISTQTDDEGDGLGEGEAKKPKKKAKELTHPPKGPPVCHICGRGFGSWK 151

Query: 79  ALFGHMRCHPERQWRGINPPPNF 91
           A+FGHMR H +R ++G  PPP F
Sbjct: 152 AVFGHMRAHRDRNYQGFLPPPTF 174

[Close]

BLAST of Lsi10G008280 vs. TAIR10
Match: AT5G56200.1 (AT5G56200.1 C2H2 type zinc finger transcription factor family)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-08
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1


Query: 56  CSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFL 92
           C  C KKF S KAL+GHMR HP+R W+G+ PPP  L
Sbjct: 132 CCVCYKKFTSMKALYGHMRFHPDRGWKGVLPPPPLL 167

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: gi|449444596|ref|XP_004140060.1| (PREDICTED: zinc finger protein ZAT3 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.8e-55
Identity = 123/179 (68.72%), Postives = 134/179 (74.86%), Query Frame = 1


Query: 1   MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECG 60
           MD PLFSFN   S++TTNS    RRK TKFIKTTT      T      P+NITPPCSECG
Sbjct: 1   MDLPLFSFNAQRSSTTTNS----RRKPTKFIKTTTLNNASAT------PHNITPPCSECG 60

Query: 61  KKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAG 120
           KKF SWKALFGHMRCHPERQWRGINPPP FL P +A +L  DH+IA SLIML+NA PD G
Sbjct: 61  KKFCSWKALFGHMRCHPERQWRGINPPPIFLHPPSAAQL--DHEIATSLIMLSNAPPDPG 120

Query: 121 RGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN 172
           RGT E        ++KPR +SG+LDLNL   PPPMEEIEQESSS YSSGIVLDLRLGLN
Sbjct: 121 RGTSEGREAVVVCEHKPRAHSGLLDLNL---PPPMEEIEQESSSPYSSGIVLDLRLGLN 164

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: gi|823135809|ref|XP_012467663.1| (PREDICTED: zinc finger protein ZAT3-like [Gossypium raimondii])

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 69/140 (49.29%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 6   FSFNVFPSTSTTNSTSNPRRKRTKFIK----------TTTSGTGKPTKQAKKAPNNITPP 65
           F  +V     T N    PR+KRTK +K          +TT    K TK+   A   IT P
Sbjct: 13  FLSSVTQHNVTVNYDPKPRKKRTKVVKVDVGQFPTCSSTTVSRPKYTKKPDPAAPKITRP 72

Query: 66  CSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATE------LQQDHDIAASL 125
           C+ECGKKFWSWKALFGHMRCHPERQWRGINPPPN+ RP            + DH+IAASL
Sbjct: 73  CTECGKKFWSWKALFGHMRCHPERQWRGINPPPNYCRPVKPASNVETLMTEDDHEIAASL 132

Query: 126 IMLANASPDAGRGTVEDYKP 130
           +MLAN S  +       Y+P
Sbjct: 133 LMLANGSTASESECGTSYRP 152

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: gi|1009150477|ref|XP_015893038.1| (PREDICTED: zinc finger protein ZAT3 [Ziziphus jujuba])

HSP 1 Score: 123.6 bits (309), Expect = 3.3e-25
Identity = 66/129 (51.16%), Postives = 78/129 (60.47%), Query Frame = 1


Query: 13  STSTTNSTSNPRRKRTKFIKTTTSGTG-----KPTKQAKKAPN--NITPPCSECGKKFWS 72
           S++      NPRRKR+K I+  T+ T      KP    K  P    IT PCSECGKKFWS
Sbjct: 35  SSTPAKRHENPRRKRSKLIRLETAATSPIGISKPKYGKKPDPTAPKITRPCSECGKKFWS 94

Query: 73  WKALFGHMRCHPERQWRGINPPPNFLRPFAATEL-----------------QQDHDIAAS 118
           WKALFGHMRCHPERQWRGINPPPNF RP +  +L                 + DH++AA 
Sbjct: 95  WKALFGHMRCHPERQWRGINPPPNFRRPISPIKLPSNSSEPPPRRPPLDLTEDDHEVAAC 154

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: gi|747082735|ref|XP_011088704.1| (PREDICTED: zinc finger protein ZAT3-like [Sesamum indicum])

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-25
Identity = 63/113 (55.75%), Postives = 77/113 (68.14%), Query Frame = 1


Query: 20  TSNPRRK-RTKFIKT-----TTSGTGKPTKQAKKAPNN----ITPPCSECGKKFWSWKAL 79
           T NPR+K RTKF+         + T KP   + + P++    IT PC+ECGKKFWSWKAL
Sbjct: 24  THNPRKKKRTKFLTIIRDDDAAATTSKPKPTSTRKPDSSAPKITRPCTECGKKFWSWKAL 83

Query: 80  FGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANA---SPDA 120
           FGHMRCHPERQWRGINPPPN +R   +   ++DH+IA  L+MLANA   SP A
Sbjct: 84  FGHMRCHPERQWRGINPPPNLVRQHLSASTEEDHEIATCLLMLANAPVESPSA 136

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: gi|985460385|ref|XP_015388244.1| (PREDICTED: zinc finger protein ZAT3 [Citrus sinensis])

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-24
Identity = 65/131 (49.62%), Postives = 77/131 (58.78%), Query Frame = 1


Query: 13  STSTTNSTSNPRRKRTKFIKTTTSGTG-------KPTKQAKKAPN--NITPPCSECGKKF 72
           S+   N   + R+KR+K IK   S T        KP    K  P    IT PCSECGKKF
Sbjct: 29  SSPDANYQQSARKKRSKLIKIDASATSSCSASVSKPKYAKKPDPGAPKITRPCSECGKKF 88

Query: 73  WSWKALFGHMRCHPERQWRGINPPPNFLRPFAATE---------LQQDHDIAASLIMLAN 126
           WSWKALFGHMRCHPERQWRGINPPPNF RP +  +           +DH++AA L+MLAN
Sbjct: 89  WSWKALFGHMRCHPERQWRGINPPPNFRRPASPVKEVTSVENVMTVEDHEVAACLLMLAN 148

The following BLAST results are available for this feature:

BLAST of Lsi10G008280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZAT3_ARATH	6.6e-26	49.15	Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=1 SV=1	[more]
ZAT2_ARATH	2.4e-20	42.45	Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=1 SV=1	[more]

BLAST of Lsi10G008280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAW8_CUCSA	1.2e-55	68.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118360 PE=4 SV=1	[more]
A0A0D2Q9Q5_GOSRA	2.1e-26	49.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206600 PE=4 SV=1	[more]
U5GMX5_POPTR	3.3e-24	49.62	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s21520g PE=4 SV=1	[more]
A0A067FLN6_CITSI	3.3e-24	52.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038358mg PE=4 SV=1	[more]
A0A0D2PZN6_GOSRA	3.3e-24	53.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G259000 PE=4 SV=1	[more]

BLAST of Lsi10G008280 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35280.1	3.7e-27	49.15	C2H2-like zinc finger protein	[more]
AT2G17180.1	1.4e-21	42.45	C2H2-like zinc finger protein	[more]
AT2G26940.1	5.9e-09	37.14	C2H2-type zinc finger family protein	[more]
AT4G35610.1	1.7e-08	40.96	zinc finger (C2H2 type) family protein	[more]
AT5G56200.1	5.0e-08	61.11	C2H2 type zinc finger transcription factor family	[more]

BLAST of Lsi10G008280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444596\|ref\|XP_004140060.1\|	1.8e-55	68.72	PREDICTED: zinc finger protein ZAT3 [Cucumis sativus]	[more]
gi\|823135809\|ref\|XP_012467663.1\|	2.9e-26	49.29	PREDICTED: zinc finger protein ZAT3-like [Gossypium raimondii]	[more]
gi\|1009150477\|ref\|XP_015893038.1\|	3.3e-25	51.16	PREDICTED: zinc finger protein ZAT3 [Ziziphus jujuba]	[more]
gi\|747082735\|ref\|XP_011088704.1\|	4.3e-25	55.75	PREDICTED: zinc finger protein ZAT3-like [Sesamum indicum]	[more]
gi\|985460385\|ref\|XP_015388244.1\|	2.8e-24	49.62	PREDICTED: zinc finger protein ZAT3 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048235	pollen sperm cell differentiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0044212	transcription regulatory region DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G008280.1	Lsi10G008280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PFAM	PF13912	zf-C2H2_6	coord: 56..78 score: 5.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 56..76 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 54..81 score: 9
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 56..76 score: 4.
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 54..158 score: 3.3
None	No IPR available	PANTHER	PTHR26374:SF186	SUBFAMILY NOT NAMED	coord: 54..158 score: 3.3
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 55..79 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G008280	Csa6G118360	Cucumber (Chinese Long) v2	culsiB409
Lsi10G008280	CSPI06G09700	Wild cucumber (PI 183967)	cpilsiB411
Lsi10G008280	Cucsa.119850	Cucumber (Gy14) v1	cgylsiB177
Lsi10G008280	Cp4.1LG16g03520	Cucurbita pepo (Zucchini)	cpelsiB226
Lsi10G008280	CsGy6G009820	Cucumber (Gy14) v2	cgyblsiB374
Lsi10G008280	CsaV3_6G010150	Cucumber (Chinese Long) v3	cuclsiB432

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G008280	Cucumber (Chinese Long) v3	cuclsiB450
Lsi10G008280	Watermelon (97103) v2	lsiwmbB048
Lsi10G008280	Wax gourd	lsiwgoB076
Lsi10G008280	Cucumber (Gy14) v1	cgylsiB174
Lsi10G008280	Cucumber (Gy14) v1	cgylsiB175
Lsi10G008280	Wild cucumber (PI 183967)	cpilsiB425
Lsi10G008280	Wild cucumber (PI 183967)	cpilsiB426
Lsi10G008280	Cucumber (Chinese Long) v2	culsiB423
Lsi10G008280	Cucumber (Chinese Long) v2	culsiB424
Lsi10G008280	Melon (DHL92) v3.5.1	lsimeB051
Lsi10G008280	Watermelon (Charleston Gray)	lsiwcgB049
Lsi10G008280	Watermelon (97103) v1	lsiwmB076
Lsi10G008280	Cucumber (Gy14) v2	cgyblsiB387