Lsi10G006200 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G006200
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNADH-quinone oxidoreductase subunit C
Locationchr10 : 8709484 .. 8709960 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTGTTTCTTCCATCAATCATCTGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAACGTAGCATTGGATAATTAAGAATCAGAATAGGTCCAGTCCAGGGGACAAATCAATAGGAAATGCTATTTGCTTTGTAAGAATAAAAAGAAGAAACTTGTATGAAATGAAAGAGTTTTGCGGGAATTGTCTTGATTGTCGGATATCATTGAGAAATAGGAAGAAGTGTTATCGAACGATTTCCTGAAATTCTTCCCGAGTCAAAAATCCTGCAACAAGTCTCGATCTATACAGAACGCACTGGGTTTTTGTCTTTCTTTCGGTTGAATTGA

mRNA sequence

ATGTTTGGTGTTTCTTCCATCAATCATCTGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAACGAAGAAGTGTTATCGAACGATTTCCTGAAATTCTTCCCGAGTCAAAAATCCTGCAACAAGTCTCGATCTATACAGAACGCACTGGGTTTTTGTCTTTCTTTCGGTTGAATTGA

Coding sequence (CDS)

ATGTTTGGTGTTTCTTCCATCAATCATCTGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAACGAAGAAGTGTTATCGAACGATTTCCTGAAATTCTTCCCGAGTCAAAAATCCTGCAACAAGTCTCGATCTATACAGAACGCACTGGGTTTTTGTCTTTCTTTCGGTTGAATTGA

Protein sequence

MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQRRSVIERFPEILPESKILQQVSIYTERTGFLSFFRLN
Homology
[Close]
BLAST of Lsi10G006200 vs. Swiss-Prot
Match: NDUS3_SOLTU (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum GN=NAD9 PE=1 SV=3)

HSP 1 Score: 141.4 bits (355), Expect = 5.9e-33
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGV SINH DLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVFSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. Swiss-Prot
Match: NDUS3_PATWE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Patellifolia webbiana GN=NAD9 PE=3 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 5.9e-33
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INH DLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. Swiss-Prot
Match: NDUS3_ORYSJ (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza sativa subsp. japonica GN=NAD9 PE=2 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 5.9e-33
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INH DLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. Swiss-Prot
Match: NDUS3_BETTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta trigyna GN=NAD9 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.9e-33
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INH DLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. Swiss-Prot
Match: NDUS3_BETVU (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta vulgaris GN=NAD9 PE=2 SV=3)

HSP 1 Score: 141.4 bits (355), Expect = 5.9e-33
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INH DLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. TrEMBL
Match: A0A023T158_9ROSI (NADH dehydrogenase subunit 9 OS=Licania sprucei GN=nad9 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. TrEMBL
Match: A0A0K1ZFU5_9GENT (NADH dehydrogenase subunit 9 OS=Asclepias verticillata GN=nad9 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. TrEMBL
Match: A0A0K1ZFR7_SOLRO (NADH dehydrogenase subunit 9 OS=Solanum rostratum GN=nad9 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. TrEMBL
Match: A0A0N6WJC8_GOSBA (NADH dehydrogenase subunit 9 OS=Gossypium barbadense GN=nad9 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. TrEMBL
Match: Q9MD76_LUPLU (NADH dehydrogenase subunit 9 OS=Lupinus luteus GN=nad9 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. TAIR10
Match: ATMG00070.1 (ATMG00070.1 NADH dehydrogenase subunit 9)

HSP 1 Score: 144.1 bits (362), Expect = 5.1e-35
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVS INH DLRRISTDYGFEGHPLRKDLPLSGYV+VRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSGYVQVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. NCBI nr
Match: gi|651729773|ref|YP_009041188.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Rhazya stricta])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. NCBI nr
Match: gi|505273|emb|CAA56168.1| (NADH dehydrogenase [Solanum tuberosum])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. NCBI nr
Match: gi|323149051|ref|YP_004222820.1| (NADH dehydrogenase subunit 9 [Vigna radiata])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. NCBI nr
Match: gi|916446893|gb|AKZ24890.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Ellisia nyctelea])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

[Close]
BLAST of Lsi10G006200 vs. NCBI nr
Match: gi|618627336|gb|AHX81465.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Licania sprucei])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1   MFGVSSINHLDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 60
           MFGVSSINH DLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQR 71
           FDFASPWEQR
Sbjct: 178 FDFASPWEQR 187

The following BLAST results are available for this feature:
BLAST of Lsi10G006200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUS3_SOLTU5.9e-3394.29NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum GN=NA... [more]
NDUS3_PATWE5.9e-3394.29NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Patellifolia webbiana G... [more]
NDUS3_ORYSJ5.9e-3394.29NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza sativa subsp. jap... [more]
NDUS3_BETTR5.9e-3394.29NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta trigyna GN=NAD9 PE... [more]
NDUS3_BETVU5.9e-3394.29NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta vulgaris GN=NAD9 P... [more]
BLAST of Lsi10G006200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A023T158_9ROSI9.1e-3398.57NADH dehydrogenase subunit 9 OS=Licania sprucei GN=nad9 PE=3 SV=1[more]
A0A0K1ZFU5_9GENT9.1e-3398.57NADH dehydrogenase subunit 9 OS=Asclepias verticillata GN=nad9 PE=3 SV=1[more]
A0A0K1ZFR7_SOLRO9.1e-3398.57NADH dehydrogenase subunit 9 OS=Solanum rostratum GN=nad9 PE=3 SV=1[more]
A0A0N6WJC8_GOSBA9.1e-3398.57NADH dehydrogenase subunit 9 OS=Gossypium barbadense GN=nad9 PE=3 SV=1[more]
Q9MD76_LUPLU9.1e-3398.57NADH dehydrogenase subunit 9 OS=Lupinus luteus GN=nad9 PE=3 SV=1[more]
BLAST of Lsi10G006200 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00070.15.1e-3595.71ATMG00070.1 NADH dehydrogenase subunit 9[more]
BLAST of Lsi10G006200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|651729773|ref|YP_009041188.1|1.3e-3298.57NADH dehydrogenase subunit 9 (mitochondrion) [Rhazya stricta][more]
gi|505273|emb|CAA56168.1|1.3e-3298.57NADH dehydrogenase [Solanum tuberosum][more]
gi|323149051|ref|YP_004222820.1|1.3e-3298.57NADH dehydrogenase subunit 9 [Vigna radiata][more]
gi|916446893|gb|AKZ24890.1|1.3e-3298.57NADH dehydrogenase subunit 9 (mitochondrion) [Ellisia nyctelea][more]
gi|618627336|gb|AHX81465.1|1.3e-3298.57NADH dehydrogenase subunit 9 (mitochondrion) [Licania sprucei][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: INTERPRO
TermDefinition
IPR001268NADH_UbQ_OxRdtase_30kDa_su
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0070469 respiratory chain
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G006200.1Lsi10G006200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitPRODOMPD001581coord: 1..21
score: 8.
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitPFAMPF00329Complex1_30kDacoord: 1..35
score: 1.
NoneNo IPR availablePANTHERPTHR10884NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3coord: 1..89
score: 1.6
NoneNo IPR availableunknownSSF143243Nqo5-likecoord: 1..67
score: 3.66

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G006200Cucumber (Gy14) v1cgylsiB594
Lsi10G006200Cucurbita maxima (Rimu)cmalsiB508
Lsi10G006200Wild cucumber (PI 183967)cpilsiB091
Lsi10G006200Cucumber (Chinese Long) v2culsiB093
Lsi10G006200Melon (DHL92) v3.5.1lsimeB054
Lsi10G006200Cucumber (Gy14) v2cgyblsiB086