Lsi10G005890 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G005890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 8553344 .. 8554079 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACACGACCAAAGTAATATCACCCTTCAATATCACATTCCTTGTAAGTCTTAATAATAATTTCATTAATATATTACAATCTTTCTTTCTTTCTTTCTTGAACAATTGATATCATAATTCATTTTTAGGCCAAGAAAATCCAACCACAAAAGTGTTATCAACATTTATAGTTCAAGATGATCATCATAATGTTGGCCAAATTGACTATGGTTCCTTCTTTGTCTCAATTGCTTTAGAGGAGTTTCGATGTGTTGCAAAAGACTTAAACAATATTGGTTATGGTAACATATCAAACTTATATACCTTTTATTTCTTGAAAGAAAATAAAAAGATTTTCTTATGTGTTTTCAATTGTGGCAGCTCCAGTTACTATTACAAGTTCACAAATCAGATTCGTTGTTGAAATTGATCATCTTGAAGTTATTCTAACCACCCAAGTATATTTATTGTCTTTTTCATTACATACATTAAAGTTAAAATATTTAGGGTATGAACAAGTTACTTGGCATTTTTTTTTTTAATTTAGGATGGATATTGCATAATTGGAGGCATTGAAGAAGGAGATGAAATTGAATGTGGATTTAGTCTTTATCCAATGGAATTCTACCGTAGTTTCACATCGGAAAGAGTATGGTTATTCAAGTCATATGATCCCAGTGGTTTGATGTTGGTTGCTCCTATGGGAATGTATACTCAGATTTCTTCATATTTTCCCGATGATTACTATGATTGA

mRNA sequence

ATGCCACACGACCAAAGTAATATCACCCTTCAATATCACATTCCTTGCCAAGAAAATCCAACCACAAAAGTGTTATCAACATTTATAGTTCAAGATGATCATCATAATGTTGGCCAAATTGACTATGGTTCCTTCTTTGTCTCAATTGCTTTAGAGGAGTTTCGATGTGTTGCAAAAGACTTAAACAATATTGGTTATGCTCCAGTTACTATTACAAGTTCACAAATCAGATTCGTTGTTGAAATTGATCATCTTGAAGTTATTCTAACCACCCAAGATGGATATTGCATAATTGGAGGCATTGAAGAAGGAGATGAAATTGAATGTGGATTTAGTCTTTATCCAATGGAATTCTACCGTAGTTTCACATCGGAAAGAGTATGGTTATTCAAGTCATATGATCCCAGTGGTTTGATGTTGGTTGCTCCTATGGGAATGTATACTCAGATTTCTTCATATTTTCCCGATGATTACTATGATTGA

Coding sequence (CDS)

ATGCCACACGACCAAAGTAATATCACCCTTCAATATCACATTCCTTGCCAAGAAAATCCAACCACAAAAGTGTTATCAACATTTATAGTTCAAGATGATCATCATAATGTTGGCCAAATTGACTATGGTTCCTTCTTTGTCTCAATTGCTTTAGAGGAGTTTCGATGTGTTGCAAAAGACTTAAACAATATTGGTTATGCTCCAGTTACTATTACAAGTTCACAAATCAGATTCGTTGTTGAAATTGATCATCTTGAAGTTATTCTAACCACCCAAGATGGATATTGCATAATTGGAGGCATTGAAGAAGGAGATGAAATTGAATGTGGATTTAGTCTTTATCCAATGGAATTCTACCGTAGTTTCACATCGGAAAGAGTATGGTTATTCAAGTCATATGATCCCAGTGGTTTGATGTTGGTTGCTCCTATGGGAATGTATACTCAGATTTCTTCATATTTTCCCGATGATTACTATGATTGA

Protein sequence

MPHDQSNITLQYHIPCQENPTTKVLSTFIVQDDHHNVGQIDYGSFFVSIALEEFRCVAKDLNNIGYAPVTITSSQIRFVVEIDHLEVILTTQDGYCIIGGIEEGDEIECGFSLYPMEFYRSFTSERVWLFKSYDPSGLMLVAPMGMYTQISSYFPDDYYD
Homology
[Close]
BLAST of Lsi10G005890 vs. TrEMBL
Match: A0A0A0LJU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287150 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.5e-44
Identity = 83/128 (64.84%), Postives = 103/128 (80.47%), Query Frame = 1 

Query: 30  VQDDHHNVGQIDYGSFFVSIALEEFRCVAKDLNNIGYAPVTITSSQIRFVVEIDHLEVIL 89
           + ++   VG +DYGSFFVS+ALEEFRCV +D+ N  Y  VTITSSQI+FV  +DH E   
Sbjct: 3   IVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWETSF 62

Query: 90  TTQDGYCIIGGIEEGDEIECGFSLYPMEFYRSFTSERVWLFKSYDPSGLMLVAPMGMYTQ 149
           TTQ+G CIIGGIEEG+EI+CG SLYPMEFY++FTS+RVW F S D +GL+L+APMG+YT 
Sbjct: 63  TTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTH 122

Query: 150 ISSYFPDD 158
           ISS+FP D
Sbjct: 123 ISSFFPQD 130

[Close]
BLAST of Lsi10G005890 vs. TrEMBL
Match: A0A0A0LMQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287140 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.6e-41
Identity = 79/128 (61.72%), Postives = 100/128 (78.12%), Query Frame = 1 

Query: 30  VQDDHHNVGQIDYGSFFVSIALEEFRCVAKDLNNIGYAPVTITSSQIRFVVEIDHLEVIL 89
           + ++H NVG +DYGSFFVS+AL++FRCV +D+ +  Y P+TI SSQI FVV+ D  E   
Sbjct: 3   IVEEHANVGDVDYGSFFVSMALDDFRCVVQDMEDSDYVPITIRSSQINFVVDHDW-ETSF 62

Query: 90  TTQDGYCIIGGIEEGDEIECGFSLYPMEFYRSFTSERVWLFKSYDPSGLMLVAPMGMYTQ 149
           T ++G CIIGGIEEGDEI CG S YPMEFY+ FTS+RVW F S D +GL+L+APMG+YT 
Sbjct: 63  TAKEGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVWFFSSCDTNGLLLIAPMGVYTH 122

Query: 150 ISSYFPDD 158
           ISS+FP D
Sbjct: 123 ISSFFPQD 129

[Close]
BLAST of Lsi10G005890 vs. TrEMBL
Match: A0A0A0LQ10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287180 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.9e-24
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 85  LEVILTTQDGYCIIGGIEEGDEIECGFSLYPMEFYRSFTSERVW-LFKSYDPSGLMLVAP 144
           +EVILTT++G CIIGG EEGDEI+CG SLYPMEFY++FTS+ VW LF SYDP+G++L+AP
Sbjct: 1   MEVILTTKEGECIIGGTEEGDEIKCGISLYPMEFYKAFTSKGVWLLFNSYDPNGMLLIAP 60

Query: 145 MGMYTQISSYFPDDYY 160
           MG+YT ISS+ P D Y
Sbjct: 61  MGLYTHISSFSPHDIY 76

[Close]
BLAST of Lsi10G005890 vs. TrEMBL
Match: A0A0A0KFM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106730 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 42/122 (34.43%), Postives = 72/122 (59.02%), Query Frame = 1 

Query: 37  VGQIDYGSFFVSIALEEFRCVAKDLNNIGYAPVTITSSQIRFVVEIDHLEVILTTQDGYC 96
           +GQID  S FVS+  EEF  +  + +   Y  V ITS ++ F   I   E I+T +DG C
Sbjct: 133 IGQIDL-SAFVSMDSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQ-ETIITPEDGQC 192

Query: 97  IIGGIEEGDEIECGFSL-YPMEFYR-SFTSERVWLFKSYDPSGLMLVAPMGMYTQISSYF 156
           +IGG+   ++++   ++  P  F+  +  S+R+WLFK  + +  ++ AP+G+Y ++ S+F
Sbjct: 193 LIGGVRAPNQVQFIITMSQPNAFFHFASQSKRIWLFKEVNSTKGIITAPLGLYGRLVSFF 252

[Close]
BLAST of Lsi10G005890 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 41/120 (34.17%), Postives = 73/120 (60.83%), Query Frame = 1 

Query: 38  GQIDYGSFFVSIALEEFRCVAKDLNNIGYAPVTITSSQIRFVVEIDHLEVILTTQDGYCI 97
           G I+Y +F VSI   +FR +A +LN+   + VT T+S++ F  +  + E+  + ++  C+
Sbjct: 131 GDIEYTTF-VSIDSRDFRRIASELNSRSVS-VTFTNSRVNFFNK--NKEITFSKEENQCV 190

Query: 98  IGGIEEGDEIECGFSLYPMEFYRSFTSE--RVWLFKSYDPSGLMLVAPMGMYTQISSYFP 156
           IGG+EEG+E     +++P+ F+   +S+  RVW     D S +M++ P+G++ Q   YFP
Sbjct: 191 IGGVEEGEEFRFIITVHPLVFFLDLSSQSKRVWFLMQRDFSCIMIL-PLGLWQQFWVYFP 245

[Close]
BLAST of Lsi10G005890 vs. NCBI nr
Match: gi|700206914|gb|KGN62033.1| (hypothetical protein Csa_2G287150 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 5.0e-44
Identity = 83/128 (64.84%), Postives = 103/128 (80.47%), Query Frame = 1 

Query: 30  VQDDHHNVGQIDYGSFFVSIALEEFRCVAKDLNNIGYAPVTITSSQIRFVVEIDHLEVIL 89
           + ++   VG +DYGSFFVS+ALEEFRCV +D+ N  Y  VTITSSQI+FV  +DH E   
Sbjct: 3   IVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWETSF 62

Query: 90  TTQDGYCIIGGIEEGDEIECGFSLYPMEFYRSFTSERVWLFKSYDPSGLMLVAPMGMYTQ 149
           TTQ+G CIIGGIEEG+EI+CG SLYPMEFY++FTS+RVW F S D +GL+L+APMG+YT 
Sbjct: 63  TTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTH 122

Query: 150 ISSYFPDD 158
           ISS+FP D
Sbjct: 123 ISSFFPQD 130

[Close]
BLAST of Lsi10G005890 vs. NCBI nr
Match: gi|659116192|ref|XP_008457954.1| (PREDICTED: uncharacterized protein LOC103497518 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 7.2e-43
Identity = 81/122 (66.39%), Postives = 100/122 (81.97%), Query Frame = 1 

Query: 36  NVGQIDYGSFFVSIALEEFRCVAKDLNNIGYAPVTITSSQIRFVVEIDHLEVILTTQDGY 95
           +VG +DYGSFFVS+ALEEFRCV  D+ N  Y PVTITSS+I+FV  IDH E   TT++G 
Sbjct: 9   DVGDVDYGSFFVSMALEEFRCVVNDMENAAYVPVTITSSRIKFVALIDHWETSFTTKEGE 68

Query: 96  CIIGGIEEGDEIECGFSLYPMEFYRSFTSERVWLFKSYDPSGLMLVAPMGMYTQISSYFP 155
           CIIGGIEEG EI+CG SLYPM+FY++FTS+RVW F S D +GL+L+APMG+YT ISS+FP
Sbjct: 69  CIIGGIEEGQEIKCGISLYPMKFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFP 128

Query: 156 DD 158
            +
Sbjct: 129 QE 130

[Close]
BLAST of Lsi10G005890 vs. NCBI nr
Match: gi|700206913|gb|KGN62032.1| (hypothetical protein Csa_2G287140 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 5.2e-41
Identity = 79/128 (61.72%), Postives = 100/128 (78.12%), Query Frame = 1 

Query: 30  VQDDHHNVGQIDYGSFFVSIALEEFRCVAKDLNNIGYAPVTITSSQIRFVVEIDHLEVIL 89
           + ++H NVG +DYGSFFVS+AL++FRCV +D+ +  Y P+TI SSQI FVV+ D  E   
Sbjct: 3   IVEEHANVGDVDYGSFFVSMALDDFRCVVQDMEDSDYVPITIRSSQINFVVDHDW-ETSF 62

Query: 90  TTQDGYCIIGGIEEGDEIECGFSLYPMEFYRSFTSERVWLFKSYDPSGLMLVAPMGMYTQ 149
           T ++G CIIGGIEEGDEI CG S YPMEFY+ FTS+RVW F S D +GL+L+APMG+YT 
Sbjct: 63  TAKEGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVWFFSSCDTNGLLLIAPMGVYTH 122

Query: 150 ISSYFPDD 158
           ISS+FP D
Sbjct: 123 ISSFFPQD 129

[Close]
BLAST of Lsi10G005890 vs. NCBI nr
Match: gi|700206917|gb|KGN62036.1| (hypothetical protein Csa_2G287180 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 85  LEVILTTQDGYCIIGGIEEGDEIECGFSLYPMEFYRSFTSERVW-LFKSYDPSGLMLVAP 144
           +EVILTT++G CIIGG EEGDEI+CG SLYPMEFY++FTS+ VW LF SYDP+G++L+AP
Sbjct: 1   MEVILTTKEGECIIGGTEEGDEIKCGISLYPMEFYKAFTSKGVWLLFNSYDPNGMLLIAP 60

Query: 145 MGMYTQISSYFPDDYY 160
           MG+YT ISS+ P D Y
Sbjct: 61  MGLYTHISSFSPHDIY 76

[Close]
BLAST of Lsi10G005890 vs. NCBI nr
Match: gi|659116009|ref|XP_008457852.1| (PREDICTED: uncharacterized protein LOC103497437 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 59/149 (39.60%), Postives = 89/149 (59.73%), Query Frame = 1 

Query: 8   ITLQYHIPCQENPTTKVLSTFIVQDDHHNVGQIDYGSFFVSIALEEFRCVAKDLNNIG-Y 67
           + L++H     +P+ ++L T+     +   G+I YG F VS+ L +FR V    +N   +
Sbjct: 1   MALEFHSSSFVHPSPQLLRTWQPSYHYEFPGKIGYGPF-VSLELHDFRNVVLIFDNTKTH 60

Query: 68  APVTITSSQIRFVVEIDHLEVILTTQDGYCIIGGIEEGDEIECGFSLYPMEFYRSFTSER 127
            P  +T S+ +F   +   E+I T +   CIIGGI EG+E      L P+E Y +FTS+R
Sbjct: 61  VPFRVTISEFKFF--LPDKEIIFTNERDGCIIGGIREGEEWRGAMCLNPIEGYFNFTSKR 120

Query: 128 VWLFKSYDPSGLMLVAPMGMYTQISSYFP 156
           +WLF+SYDP G+ LVAP G+Y  IS++FP
Sbjct: 121 LWLFESYDPIGVTLVAPFGLYVNISTFFP 146

The following BLAST results are available for this feature:
BLAST of Lsi10G005890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G005890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJU4_CUCSA3.5e-4464.84Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287150 PE=4 SV=1[more]
A0A0A0LMQ7_CUCSA3.6e-4161.72Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287140 PE=4 SV=1[more]
A0A0A0LQ10_CUCSA8.9e-2469.74Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287180 PE=4 SV=1[more]
A0A0A0KFM5_CUCSA1.1e-1034.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106730 PE=4 SV=1[more]
A0A0A0K9W8_CUCSA3.3e-1034.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1[more]
BLAST of Lsi10G005890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G005890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206914|gb|KGN62033.1|5.0e-4464.84hypothetical protein Csa_2G287150 [Cucumis sativus][more]
gi|659116192|ref|XP_008457954.1|7.2e-4366.39PREDICTED: uncharacterized protein LOC103497518 [Cucumis melo][more]
gi|700206913|gb|KGN62032.1|5.2e-4161.72hypothetical protein Csa_2G287140 [Cucumis sativus][more]
gi|700206917|gb|KGN62036.1|1.3e-2369.74hypothetical protein Csa_2G287180 [Cucumis sativus][more]
gi|659116009|ref|XP_008457852.1|1.7e-2039.60PREDICTED: uncharacterized protein LOC103497437 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G005890.1Lsi10G005890.1mRNA