Lsi10G003040 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G003040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	nucleotide binding;nucleic acid binding;RNA binding
Location	chr10 : 4890733 .. 4900434 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGAGACCATTTTTAGGGCAAAAAACTCTTCCTTCTTCTTTCCCTTACACTCAGTTTTTTTGAAATACGTTTTTATAATTTCTGCTTTTGAATACTTAACGGTGTAAATTTTCCGGCCATATTGTTTTTGTTTCTTTCTCCACCCACCGAGATCCACCACCGTCATCGCCGCCGCCGCCGCCTCCTCTCTCTCTCATAATATTATTTTATTGGAACCTACATTCACAATAAAACCTCTTTCTCATTCCCCATCTCCTCCTCTTTCTCTCTCTCTCTCTCTCTAGTCTTCATTCAGCAGCCTCTCTCTCTCTCTCTCTCCAACCTGGTCTTACTCCTTCACACCAAACCAGGGCCGTCGTCTCTCGCATATCTCGCCGGAGAGAGAGAGAAAAACGAAGGGGGTGGAGACGGAGACGGAGACAGAGAGACTTTGAAGATCATGGCCCAACCTTCCAACGGTGCTGATCTCAATCCCCAGGCCCCTCACCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCATCAACAGCAGATGATGATGTACCCTCCTCAGCATTATATGACGTATTCTCACCATCCTTATCAACAGCAACAACAGCAACAGCAGCAACCGTCGCAGCAGCAGCAGCAGCAGCAAGCTCAGTCGCAACGACCTCGCAGACAGGGGTCAACGGACGAGGTTAAGACGCTTTGGATTGGTGACCTTCAGCCCTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTCTAAACTTACTTATCGTATCGAACTTTTATTTTTAACGTCTCTCTACCTCTAATTTCTCTTTGAGTTTCTGTAGATCGTTTTGAGACTTTCTGTAATGAGATCGATCAGATTTCTTTATCTTTTTTCGCGCTTACACGTTCTAGAATTGATTTGAAGTCTGTGAATCTGTGGTTGTTGACATTAGTATTGCTGCATCTTATATTGTTGGATTGGTGGTCCAAAACGGGTCTAGCCAATGTGAGAAGAATTGTAACTAAAGAGGGGACAAATCTTAGATTGATTTGTTATTGTATGAACATCTCTTTTCCCTTCCATTAACTCAAAAGGGACTAGGACTGGTAATTTTAATTCTAGAATGTGCTTAACTATACCTCTGTCCTTGTTTTGACACTTCAGTTATCCTTGAAATCTTAATGATGGGCAATTAGATCACAAGTAAATTAAGTGCAATGGGTGACATTTTGGTCCACAACTAAGTAATTGCTATTTTCATACACAAGTAGTTTAGATTGTCAGAACTGAGGATGTTTAACACTACTATAGTCATGATCTGGTCATATGCAATGAGATGGAATAATTGGGATTATAACTTTGATTTTTAGCTGCTATAGATATAGCTATCTCCCACTTCATCATACCCTTTACAATGCTATTGAAATTTATGTTTCCTTCCTCATGATTCATGAAATGCATATTGTTTTAAATTAAAACGTGTATTTTCTAGTTTAAATTGAAATAACAAGTGTTATTTTCTGAGTTTCTTGTCTTAAAATAACTCATGTCTGAATTTCTTCAAACAATTTGTGATTGGTCTTCAGTGTCATCAAATACTTTTTTGAAGGAATTGGTGTATAGTAATGTATAAGTATAATTACCATTATCCTTAATTCATCCGTGCAGCATTTTTGAGTGACATATTGCTTGCTTCTGATTCTGGTTAATATTGGTCAATGTTTATATGGATGCCTGCAGACTTTTTATATTTCCCCTTGTCTAAATCAATCTCCATCAAGAACATCTTTTTTGATCATCAGTTGACTGAATTGTTTCTCTTTTGCTTTATAACCACGCAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTACGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAAGTATTGCAGAATTATAATGGTGCTATAATGCCTAATACAGAGCTACCTTTCCGTCTCAATTGGGCAACCTTTAGTGCAAATGATAGGCGACCGGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACCTTTTCTAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTTAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCTTCACAAGGTTAGCCTTGGTTCTTCTGGCACCACTGCAGGATGTTGTTTCTAAGAAATTGAAAATCTAGAAATCATCATTAACTATCTTACAGACTTCATGAATGACTGAGCTAATGTATCCCTATCCCTAGCACACACACCTAAAAAAAGGAGAATAAAAATACAGAACCTGAAAAGGTATACAAAAATTACCATTCAAAGTTGTCCTGCTTTCAAGCAACAAGATTAATTAATAAAAAGATGATGCTTATTAAAGAAGTCTGTCATGTACAGCAGTAGAATTGTTTGCAATGGTTCTTTTGGCAGTTTCTTATTTCATTCTTCTAGTTTTATGGAATTACTTCAGCCACAAAAGGGATGATGGCACCAAGGCTAGAGTCTGGTCTTATTTATTTATTTTCTGGAATTCTGCATTCCATTGATATATCTTTAGCAATGGATATATCTTTGCAATACAAGTTGAACACTTTTAGAATATGAAATCTATTATGGTAACATTTTTCAAGATTTTTCATTCTCAATCCAGTGCTTTTTTTCCCCACTAAATTTTCCCCACTAAATCTTACCCCCTCTAAATACTGAACCAACGTTATTGACTTTCGAGGCTATTGATGAATTTATTATTCTGTTGGTCATGCTTTTTGCCACATTATTCTTTATTACTGGACATCCATGTTGGATCGTATTGTAACTTTTTGGTACGGGTTTTTCTTGGATGGGGAATTTCTTTTTCCTTTTATCTTTCCCCTCCTGCTGCAATGATAAGTGAAGCATCATTTTTCAATAAGTTTAGTGAACCAGTCTACTGGCCAGTATTAATGTTGTTGGCTGCATGTCAACTAGGAGAACAATACTAGAAGTGATTGATGTTTTCCATCAGCAGGAGGAGGATCTTGACCATCTTTTGTGGGTTGCCAGTTTGCTTATTTCTTGTGGAGTCAGTTTTTTAGGGTTTTGGGGTTGTTGTGGTGGGTAATAGGAATTGCCGCTCTAGCCTCTATGTTGGAAGAGATACTGATGAACTCTTCCTTTCGTGATAAAGGAAGAGTCTTGTGGCAGGCTTGCTCTTTTGCTATTTTGTGGGGAGTGTGACTTGAGAAGGTCTTTAGAGAAGGTGCGGAAGGTTGTGAGGTTTATTAATGCATCTTTTATGGGTGTTTGTAAATTAGTCTTTCTGTAGTTTTCAGCATGGTGTTATTTTTTGAATTGTAGTCCGTTTTTGTAGTTGTTAAGGACTTCTTTTGCTGCCTTGATTTTTTGTATGCACTTCTTAGTTGTTTCATGTCTCTCCATGAAAGCTTGGTTTCTTATCTGAAAAAAGGTTTGATATTTTTATATGACACGTGCATGGTTCTTTAGGCATCTGTCCCAGTAATATTTTCTTTTTCACGAATGGGTCTTAGACATTAGCATAATGAACATGGATTGGGATTCTACTTCTTGTGGAGACGATGTTCTAATTGCTAATTTATTGTGCTATAAGGTGTAAATGTTACTAAAATGTAGTTTTTGTGTTTTCAATTTGTATATGAGATGAGATGTTGATTCTGATGCCAATTTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTAATAGCTTTGGTACTGGCTGGTGGTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACTGTTAGTTTATCCCTCCCTGTCTCATATTAATTTTCTTTCTTCCAATACATACCTAACAAACTTGTGGTACCTCAGATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCTAAATTTGGTGATGTTGTCTCTGTGAAAATCCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGGTATTCTTCTTCTTCTGTCGAGCTTTCTGTCGTTAATCATGCAGCTGCCATGCTAATCTTGATATCTTAAAAGTAGTTAGAAGTTACAAAATGGGAAGGCCACTCAGCTCAGGCACAAGTTGGATTGACCCATGAAATGGCAGTCAGTTTTGGCTTGCCGTAGTTTTAGGCCATATTGGGTCTAAGATTTATGACCTACTTGCCTGTGTATTTTAGGATATTTTGATTAGGTAGCCTGCTTTTCTAGAATATTTGTAGACATGTACTTATTTAGTTATTTTATTATAATAATTTTAGCTATATGTTTTTAGAAAGTAATGGCAAGTGGAACATTTCTAAAAAACCAAATAGACTTAATACTAGTCACTTCTTCTTCTTCTCTCTCCCTCTCTCACTTTTAATTATATATATATATATATATATATATATTAAAAAGAAACTTTTTTTTTGTAAGCACTGATTTACTTAATTGATAATTAATGTCTACCCTTGATATTAATTGTAATAATCATGGTAATCACTCATTGACATGGGGTTTATTCTTTACCCTATTTGTTATTATAATTTTTATTGATTTACTTTTTGCAATATTCCATATTCATTATTTTTGCAATATTTGATATTCATTATGTTAATATTTTCAAGAAACCCTTCCTTAACAGTAACAAAGATTCCTGCAAGCATGGACAGTCAAAGTAGAATTATCAGTCAAAAACTCTTCAGAAAATTTCAAGCCATATTAAATTTATTGAATAAAAAATGTCCATAGAAAAAAAAAGAACAAAGAAAAAAGAAACAGGGAGTGTACAAGGCCAACCACGAGAAGTTATACTTGACCTTTTGTTAGAGGATAGGCTCAAACCTACTAGGAGGCGTAGGCCAGAACCAAGCTGTGCAGTTCTTAATGAATGGCCTGGTCCAACTTGTTTGTAACTGTACATCATTCTGGTTTTTTAAAAAAAAGTGATAAAGCTGTCAGCTTGCACTCACTAGTTTTCATATTTCTCTCTGGGCTTCGGTTATAAAATTTTTCGTAATTATTCGCTAGTGTCATTTTATAGGATTGGTTGGTCTTTTACTTGTCCTAATAACATCTTTGATGTTTTGGATTCATTGTTGGTGGGTCATCCTTTTGGTGGTACCAAGAAGACAATTTGGTTGGCCTTTATTCGTATGTCTTGGTACTTATGGGATGAAAGGAACAGAAGACTCCTTAATGATAGTTTTTCTTCTTATACTTGCTTTTTGGAGCTTGTCTTGTCTACTGCTTTTTCTTGGTGTAAAACAAAGAACCCTTTCACTCATTTCAGTTTATTCTTTTTAGTCAGTAATTGGTGATTTCTATTAAAGCCCCTTTTTCATATCAATGAATTGTTTCTTTTACAAAAAAAATAATGCCCATTCTGTTGAGGTGCTTTTTTTGGGCTAGTTTTTTGAGCCCATATATTCTTTCATTTTATTCTCAATAAAAATTGTTTCTTATTTAAAAAAACAGACGCTCCAACTTGTGAGAGAACTAAGCCAAGCTTATTCTCTAATAATCTAAGAAGCACAAACACTTTAGTTTGGCTAGCATATTCGTGTTTGACCTGTGTCGGACACCTGGACACTCCTCCACTTGTTGGACACGTATCAGATACTTGTTAGTGCAACAAATGTGTTAGATATGCATAGAACACTTGTTGTGTAGACTAAAAAGACACATATATGACAATAATATTAAATTTTGCGTGTGAAATACATCAAACTAATTTTTTAAGCATATAATTGCATCAACCCATTTACTTTGATTTTCTTCTAGTATAAAAATGAGATATATTTTTAAATATATATGTATTTAATAAACATGTCCTTGTCGTGTCATGTCCTAGATTTTTTAAAAATGATGTGTTGTATTCATGTCTCGTGTCTATATCCGTGCTTCTTAGCTAATAATTTATCAAAGAGATTCTTTCTAAAGGAACGGATGTGTTCTTTCATTTCCTCCTCCCTCCTAGAATTTCATTTGTCCGATGAAGTTGATAATTCTTTTTTTTTTTTTTTTTGAATGCTTTTAATGATTTAAGTTTGCAATTATACATTGATTGCTCATAAGCTGAACTTATTTCTTTATACATTTTTAAGAATATCAAAAGCTTTTGACAAATTTGATTGGAACATTTTGGATCAAGTGCTTCATTCTGAAGATTGTGCCCTTTTCTAAGCAAATGTCTCTGGTGCCAACTTCTCTAACATCACTAATCGCAAGCCAAGAAATAAAATCTTAGCTTCTAGAGATCTTAGAAAAGGAGACCCTCTTCCTCTATTCCTTCTCCATTCCTCTTCATCGTTATGGTAGATTGCTTTAGTATACTCCTCTCTGAAAGCTCCCCCTCCGGTCTTGCTATGAAATTTCATTTGGGGAGGTCTCCCCTATCCATCAAGGTTTGGAATTTATAGGCCCTTTAGTATTATTTTATTTCATTTTTCTTTATGAAGTTTGGTTTTTCAATTGAAAAACCCTCTTCAATATTGGAAGCTTTAGAGCTTAAGACCATGGAAAATGAGAACTATTGGGGATAAATAACGCAGATTCAACAACCCTCATGATAATCCTTTTCAATAGCTAAACGGGTCACGCTCTGAGCTCTGCTTATATTCTGTATGAAGGAACAAAAGAAAATTCTAAAACCCTCACGGAAATACTCAAGTCACAAATGTCACTAATCATGGATGACATTAGAATTGTTACCTCTTCTCCTTGAAAAGCTTCACCACAGTACAGGAGTCCAATCCGACACGAATTGCATAAATGCCAGCCTCCTTTAGACCCAGTTTAGTGGCTAGAGCCGCAGCAATTGAAACCAGAAAGAACATTATCTAACCTTAGACATGTAGCCACCGCTCATCCCTTTTTCAGGTTCTCATTCCAACTAGGCTACCGATATTAATCAACAATTTTAAAGCTGAAAAACATGAGAAATATAGGATTTTGCATTGGCAACTTCACATTATGCTTCCAGTTTATTAAGTTTACCTGGAAACAATTCGTTCTTTTAAGGTGAAATTATGGGTGTGTGTGGTGTTTAATTTAAGGTCTACTAAGATGACATATGCCAAAGTTACTCCTGTGATTGTTAGCATTGCCAGTATTTTTGTTCTGTTCCTGTGTTCTTCACAAAAATCTGTGGTTTGGCAGTTTCCTGCAAACATGAATTTCCACATTACTTCCATGACTCCTATAAACCAACTCTCAGCAATCATTGTGGTCATTTAATTTATTAGAAAAATTATTAGAATTTTAAATGAATGTCATGGAAGAATTATATGATTACTTATTCCTACAATCTTTTCAAGGGAAAATAAAACTAATTAATTATTATATTTTAAAAGACGTGGCTATGTGGCTGGAAGGACATCTGTGGTTGACAAAGGAACATTTTGAAATAAAAGTTCTTGGAATGGTGTTGGGTATCTGTTTTAGCTGGGATTCAGCATTTCAGCATTGAGTTGGACATTTTTTTTCCGATTACTTTTGTGGTTAAGTAAGCTGTTTTAGTGGTTGGATTTAGATGATTTATGTGATTGGATTCGAAGCTTTGTATGGGCTAGATTCATAGTGATTGACAGGTGTTAACATCATGCATTGACTTAGTGGTCAATAAGGGTCATAGATTTAATAAAGGATTAAGAGGGAATGAGTTCAGTCCATGGTGGCTACCTACCTAGGATTTAATATTCTAAGAGTTTCTTTGGTAACCGAATGTTGTAGGGTTAAGTGGGTTGTCCTGTGAGATTAGTCGAGGTGTGCGCAAGTTGGCTTGGACACTCACATATATAAATAAGAAAGATATATTTGACAAGTGTTTAAACAAATATTTAGCTTAGGCTATTACATTCAGTTCTCTCGTCCAATTACATGCATTGAAATTAAGTTTTTCCGAGAACAGTAATGTGCGTACTAGTGGACAGCGCATGACCTATCTTCATACATTTTTTTTCCTTTTTTGTAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGGTTTGATCATATGCCTTTTACTTGTTTTTTGAATACTTTTGGATTATTAGTTGTTAATATACAACCTAGGACCTATAGAAAACAAGAGTGGAAATGGGATTTGATGACACTATGCATATAGAACTATCAACTATGACACTTATGTGGTGTGGGGATATCTGACCTTTCCTCTTTACTTTTATCTGTTAATAATGTTTTCTGTTTCCTATAAAAAATGACATTTATTGTGCAATTGTTGATACTCAAATATCTGATGAACTTGTAGACCAACTTTGAATATGTGTCAAGCTTATATTGAATAAAAGGAATAGTGGAGATAAAAAAGAAATACAGGGAAATTTATAAATTTAGAGAGTAAAAAATATTGAACTTGTTTCTTAAGCTAATAAACATCATGAAATTATGAAAATTAATTTTGATTTTTTTAGAACAGTCTACTTGATGTTGAATCATCTAGAGATATGTTTATCTAGTTTTTTTTTTCCTTTCTTTCCAAATGTTTTGACCGTCATGAGGCACTGCGTCATACTGTTTATAATCAGTTTCTTCAACCTTTTGATTTAATTGCGCACATTACATAACCTGTTTCACACTGTGCACCATTATCAGTCTGGCATCCTTTTCTTTGACCTCTCTTAGCATCAATAATCCTTAGCTCCTCTTAGCTACTATGAAAACGTTTTTTGAGGGTATTTTACCTTCAAAAGCCTTCGAAGATGAACGGAAACTTGGTTCTTTTTTCTCCTTTCCTGTTGGGGAAAACAACAAAAAGAAAATCCTCTTTTATCCTGTTCCAAATACTTGATTTAATGTTGGCAGTGGAGAGGTGATTCTAACAACCAATGGAATGGGGGACGTTATGGTGGGCAAGGCTATGGTGGTGGCTACTACTCTGTACCACAGCATCAGGACGCAAACATGCATGCCACAACTGCTGCAGTTAATGGCTCATCTTGAGAAAAGAAGGTTATGGCCATTGCCACCATCGAACTGAAATCTGAGCCTTCAATACACAAATCTCTTAGCTTTAAATATATATGAACTTCGTAATAGAGAGAACTTATTTAAGTTGTGGTTAGCTGAATCTTTATTTGCTGAATCATATGGCTTGATAACATTATTACTGCCTTGCTGGAGTCTTTTAGACTGCTTGTAGCTAGCTCATCTGAACAATTTTGGGGTATGTGGGTGGATTTTTCTTGGCTGAGGGGGTATTTTTTCTTTTTCTTTTTAAAGTTTAAATTTACAGATTATAATTTTATTATTATTATTTTTTCATATATAGTGTAGATGTTTTTATTGAACCATAATCCTAAGAATATATCCTAATGAGATGGAATCCTTAGAACT

mRNA sequence

TTTGAGACCATTTTTAGGGCAAAAAACTCTTCCTTCTTCTTTCCCTTACACTCAGTTTTTTTGAAATACGTTTTTATAATTTCTGCTTTTGAATACTTAACGGTGTAAATTTTCCGGCCATATTGTTTTTGTTTCTTTCTCCACCCACCGAGATCCACCACCGTCATCGCCGCCGCCGCCGCCTCCTCTCTCTCTCATAATATTATTTTATTGGAACCTACATTCACAATAAAACCTCTTTCTCATTCCCCATCTCCTCCTCTTTCTCTCTCTCTCTCTCTCTAGTCTTCATTCAGCAGCCTCTCTCTCTCTCTCTCTCCAACCTGGTCTTACTCCTTCACACCAAACCAGGGCCGTCGTCTCTCGCATATCTCGCCGGAGAGAGAGAGAAAAACGAAGGGGGTGGAGACGGAGACGGAGACAGAGAGACTTTGAAGATCATGGCCCAACCTTCCAACGGTGCTGATCTCAATCCCCAGGCCCCTCACCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCATCAACAGCAGATGATGATGTACCCTCCTCAGCATTATATGACGTATTCTCACCATCCTTATCAACAGCAACAACAGCAACAGCAGCAACCGTCGCAGCAGCAGCAGCAGCAGCAAGCTCAGTCGCAACGACCTCGCAGACAGGGGTCAACGGACGAGGTTAAGACGCTTTGGATTGGTGACCTTCAGCCCTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTACGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAAGTATTGCAGAATTATAATGGTGCTATAATGCCTAATACAGAGCTACCTTTCCGTCTCAATTGGGCAACCTTTAGTGCAAATGATAGGCGACCGGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACCTTTTCTAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTTAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCTTCACAAGCTTTGGTACTGGCTGGTGGTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCTAAATTTGGTGATGTTGTCTCTGTGAAAATCCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCTAACAACCAATGGAATGGGGGACGTTATGGTGGGCAAGGCTATGGTGGTGGCTACTACTCTGTACCACAGCATCAGGACGCAAACATGCATGCCACAACTGCTGCAGTTAATGGCTCATCTTGAGAAAAGAAGGTTATGGCCATTGCCACCATCGAACTGAAATCTGAGCCTTCAATACACAAATCTCTTAGCTTTAAATATATATGAACTTCGTAATAGAGAGAACTTATTTAAGTTGTGGTTAGCTGAATCTTTATTTGCTGAATCATATGGCTTGATAACATTATTACTGCCTTGCTGGAGTCTTTTAGACTGCTTGTAGCTAGCTCATCTGAACAATTTTGGGGTATGTGGGTGGATTTTTCTTGGCTGAGGGGGTATTTTTTCTTTTTCTTTTTAAAGTTTAAATTTACAGATTATAATTTTATTATTATTATTTTTTCATATATAGTGTAGATGTTTTTATTGAACCATAATCCTAAGAATATATCCTAATGAGATGGAATCCTTAGAACT

Coding sequence (CDS)

ATGGCCCAACCTTCCAACGGTGCTGATCTCAATCCCCAGGCCCCTCACCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCATCAACAGCAGATGATGATGTACCCTCCTCAGCATTATATGACGTATTCTCACCATCCTTATCAACAGCAACAACAGCAACAGCAGCAACCGTCGCAGCAGCAGCAGCAGCAGCAAGCTCAGTCGCAACGACCTCGCAGACAGGGGTCAACGGACGAGGTTAAGACGCTTTGGATTGGTGACCTTCAGCCCTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTACGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAAGTATTGCAGAATTATAATGGTGCTATAATGCCTAATACAGAGCTACCTTTCCGTCTCAATTGGGCAACCTTTAGTGCAAATGATAGGCGACCGGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACCTTTTCTAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTTAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCTTCACAAGCTTTGGTACTGGCTGGTGGTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCTAAATTTGGTGATGTTGTCTCTGTGAAAATCCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCTAACAACCAATGGAATGGGGGACGTTATGGTGGGCAAGGCTATGGTGGTGGCTACTACTCTGTACCACAGCATCAGGACGCAAACATGCATGCCACAACTGCTGCAGTTAATGGCTCATCTTGA

Protein sequence

MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYYSVPQHQDANMHATTAAVNGSS

Homology

[Close]

BLAST of Lsi10G003040 vs. Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 2.0e-143
Identity = 279/436 (63.99%), Postives = 336/436 (77.06%), Query Frame = 1


Query: 6   NGADLNPQAPHPHHQWFQQQ------QQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYM 65
           NG D+N Q      Q  QQQ      QQYQQQWMAMQYPAAAMAM   QQ MMY  Q+  
Sbjct: 2   NGGDMNQQQQQQQQQHQQQQQQWLAMQQYQQQWMAMQYPAAAMAM---QQQMMYGQQYMP 61

Query: 66  TYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNC 125
            Y  H  QQQQ+ QQ P+Q              Q S+++ KT+WIGDLQ WMDE+YL++C
Sbjct: 62  YYQQH--QQQQKMQQSPTQ-------------IQSSSEDNKTIWIGDLQQWMDESYLHSC 121

Query: 126 FAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWAT 185
           F+  GEV SVK+I NKQTGQSE YGFVEF +HA A+KVLQ+YNG +MPNTE PFRLNWA 
Sbjct: 122 FSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAG 181

Query: 186 FSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGF 245
           FS  ++R +TGSD SIFVGDLA+DVTD ML++TF+SRY S+KGAKVV+D+N+G SKGYGF
Sbjct: 182 FSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGF 241

Query: 246 VRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGM 305
           VRFGDE+ER+RAMTEMNG+YCSSR MRIGVATPKK S ++Q YSSQA++L+GG   +NG 
Sbjct: 242 VRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQ-YSSQAVILSGGYA-SNGA 301

Query: 306 AVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRK 365
           A  GSQSDG+S+NTTIFVGGLDS+V+DE+L+Q F++FG+VVSVKIP GKGCGFVQF++R 
Sbjct: 302 ATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRS 361

Query: 366 NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYYSVPQH 425
           +A++AIQ L+G +IGKQ VRLSWGRS  NKQ R DS +QWNGG  G Q YGG  Y   Q+
Sbjct: 362 SAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQN 417

Query: 426 QDANMHATTAAVNGSS 436
           QD+ M+AT AA   SS
Sbjct: 422 QDSGMYATGAAYGASS 417

[Close]

BLAST of Lsi10G003040 vs. Swiss-Prot
Match: RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 1.8e-141
Identity = 288/436 (66.06%), Postives = 334/436 (76.61%), Query Frame = 1


Query: 3   QPSNGADL----------NPQAPHPHHQWFQQQQQYQQQWM-AMQY-PAAAMAMMHQQQM 62
           Q +NG+D           N Q P P  QW QQQQQ QQQWM AMQY PAAAM MM QQQM
Sbjct: 2   QTTNGSDSTLATSGATPPNQQTPPPPQQW-QQQQQQQQQWMAAMQYPPAAAMMMMQQQQM 61

Query: 63  MMYPPQHYMTYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPW 122
           +MYP Q Y+ Y+  PYQQ   Q  Q    QQ Q  Q +   R GS D+VKTLW+GDL  W
Sbjct: 62  LMYPHQ-YVPYNQGPYQQHHPQLHQYGSYQQHQHQQHKAIDR-GSGDDVKTLWVGDLLHW 121

Query: 123 MDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTE 182
           MDETYL++CF+HTGEV SVKVI NK T QSEGYGFVEF S A A++VLQNY+G++MPN++
Sbjct: 122 MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSD 181

Query: 183 LPFRLNWATFSANDRRP-DTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDS 242
            PFR+NWA+FS  ++R  + G DLS+FVGDL+ DVTD +L ETFS RY SVK AKVVIDS
Sbjct: 182 QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDS 241

Query: 243 NSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVL 302
           N+GRSKGYGFVRFGDENER+RA+TEMNG YCS+R MR+G+ATPK+A   QQ +SSQA++L
Sbjct: 242 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVIL 301

Query: 303 AGGGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKG 362
           AGG G +NG    GSQSDGES N TIFVGG+D DV DEDL+QPFS+FG+VVSVKIP+GKG
Sbjct: 302 AGGHG-SNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKG 361

Query: 363 CGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGY 422
           CGFVQFA+RK+AEDAI+ LNGTVIGK TVRLSWGRS  NKQWRGDS  QWNGG   G GY
Sbjct: 362 CGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGYSRGHGY 421

Query: 423 --GGGYYSVPQHQDAN 424
             GGGY     H D+N
Sbjct: 422 NNGGGY---ANHHDSN 429

[Close]

BLAST of Lsi10G003040 vs. Swiss-Prot
Match: RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 4.1e-141
Identity = 289/428 (67.52%), Postives = 329/428 (76.87%), Query Frame = 1


Query: 13  QAPHPHHQWFQQQQQYQQQWMA--MQYPAAAMAMMHQQQMMMYPPQHYMTYSHHPYQQQQ 72
           Q+  P  Q  QQQ Q QQQWMA   QYPAAAMAMM QQQMMMYP   Y  Y+   YQQ  
Sbjct: 29  QSTPPPQQQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHP 88

Query: 73  QQQQQPSQQQQQQQAQSQRPRRQGST-DEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSV 132
           Q Q    QQQQQQ  QSQ+  R GS  D+VKTLW+GDL  WMDETYL+ CF+HT EV SV
Sbjct: 89  QFQYAAYQQQQQQHHQSQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSV 148

Query: 133 KVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSANDRRP-D 192
           KVI NKQT QSEGYGFVEF S + A++ LQ+++G  MPN E PFRLNWA+FS  ++R  +
Sbjct: 149 KVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASE 208

Query: 193 TGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENER 252
            G DLSIFVGDLA DV+DA+L ETF+ RY SVKGAKVVIDSN+GRSKGYGFVRFGDENER
Sbjct: 209 NGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENER 268

Query: 253 TRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGMAVQGSQSDG 312
           +RAMTEMNG +CSSR MR+G+ATPK+A+ Y Q   SQAL LAGG G        GS SDG
Sbjct: 269 SRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGG------NGSMSDG 328

Query: 313 ESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGL 372
           ESNN+TIFVGGLD+DV++EDL QPFS FG+VVSVKIP+GKGCGFVQFANR++AE+AI  L
Sbjct: 329 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNL 388

Query: 373 NGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYYSVPQHQDANMHAT- 432
           NGTVIGK TVRLSWGRS  NKQWR DS NQWNGG   GQGY  GY     +QD+NM+AT 
Sbjct: 389 NGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGYSRGQGYNNGY----ANQDSNMYATA 445

Query: 433 TAAVNGSS 436
            AAV G+S
Sbjct: 449 AAAVPGAS 445

[Close]

BLAST of Lsi10G003040 vs. Swiss-Prot
Match: R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 3.2e-109
Identity = 234/416 (56.25%), Postives = 278/416 (66.83%), Query Frame = 1


Query: 6   NGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHHP 65
           N    +P  P PH  W             M+YP   M  M      MY P   M +S  P
Sbjct: 39  NQPKTSPTPPPPH--W-------------MRYPPVLMPQM------MYAPPPPMPFS--P 98

Query: 66  YQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF--AHT 125
           Y Q       P+      Q++  +  +     E KT+W+GDLQ WMDE YLN+ F  A  
Sbjct: 99  YHQY------PNHHHFHHQSRGNK-HQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEE 158

Query: 126 GEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSAN 185
            E+ S+KVI NK  G SEGYGFVEF SH  ADKVLQ +NGA MPNT+ PFRLNWA+FS  
Sbjct: 159 REIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTG 218

Query: 186 DRR-PDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRF 245
           ++R  + G DLSIFVGDLA DV+DA+L ETFS +Y SVK AKVV+D+N+GRSKGYGFVRF
Sbjct: 219 EKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 278

Query: 246 GDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGMAVQ 305
           GDENERT+AMTEMNG+ CSSR MRIG ATP+K +GYQQ            GG+    A  
Sbjct: 279 GDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ-----------GGYMPSGAF- 338

Query: 306 GSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAE 365
            ++S+G++ NTTIFVGGLDS V+DEDLKQPFS+FG++VSVKIP+GKGCGFVQF NR NAE
Sbjct: 339 -TRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAE 398

Query: 366 DAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYYSVPQ 419
           +A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y G  Y VPQ
Sbjct: 399 EALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQ 411

[Close]

BLAST of Lsi10G003040 vs. Swiss-Prot
Match: RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.3e-102
Identity = 226/419 (53.94%), Postives = 277/419 (66.11%), Query Frame = 1


Query: 9   DLNPQAPHPHHQWFQQQQQYQQQWMA------MQYPAAAMAMMHQQQMMMYPPQHYMTYS 68
           D  P  P P  Q   ++++ Q +         M+YP   + + HQ   MMY P  +  Y 
Sbjct: 20  DNQPPPPPPPPQQPAKEEENQPKTSPTPPPHWMRYPPTVI-IPHQ---MMYAPPPFPPYH 79

Query: 69  HHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAH 128
            +P       Q + ++ Q     ++            KT+W+GDL  WMDE YLN+ FA 
Sbjct: 80  QYPNHHHLHHQSRGNKHQNAFNGEN------------KTIWVGDLHHWMDEAYLNSSFAS 139

Query: 129 TGE--VFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATF 188
             E  + SVKVI NK  G SEGYGFVEF SH  ADKVL+ +NG  MPNT+ PFRLNWA+F
Sbjct: 140 GDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASF 199

Query: 189 SANDRR-PDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGF 248
           S  ++R  + G DLSIFVGDL+ DV+D +L ETFS +Y SVK AKVV+D+N+GRSKGYGF
Sbjct: 200 STGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGF 259

Query: 249 VRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGM 308
           VRFGDENERT+AMTEMNG+ CSSR MRIG ATP+K +GYQQ           GG   NG 
Sbjct: 260 VRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ----------GGYMPNGT 319

Query: 309 AVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRK 368
               ++ +G+  NTTIFVGGLDS V+DEDLKQPF++FG++VSVKIP+GKGCGFVQF NR 
Sbjct: 320 L---TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRP 379

Query: 369 NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYYSVPQ 419
           NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y G  Y VPQ
Sbjct: 380 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQ 409

[Close]

BLAST of Lsi10G003040 vs. TrEMBL
Match: M5VJS3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005661mg PE=4 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 1.2e-166
Identity = 326/452 (72.12%), Postives = 367/452 (81.19%), Query Frame = 1


Query: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQ-------YQQQWMAMQYPAAAMAMMHQQQMMMY 60
           MAQ SNG DL  Q      Q  QQQQQ       +QQQWMAMQYPAAAMAMM QQQMM+Y
Sbjct: 1   MAQQSNGGDLGTQQQQQQQQQQQQQQQQWMHQHQHQQQWMAMQYPAAAMAMM-QQQMMVY 60

Query: 61  PPQHYMTYS------HHPYQQQQQQQQQ--PSQQQQQ--QQAQSQRPRRQGSTDEVKTLW 120
           P QHYM Y+      HHP+    QQQ Q  P QQQQQ  +Q Q    ++QG TDE++T+W
Sbjct: 61  P-QHYMPYAAAAAHPHHPHHNPYQQQPQGVPYQQQQQPPKQLQQSPSQKQGPTDEIRTIW 120

Query: 121 IGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNG 180
           +GDL  WMDETYL+ CFAHTG+V +VKVI NKQT QSEGYGFVEF+S   A++VLQ+YNG
Sbjct: 121 VGDLHHWMDETYLHGCFAHTGQVSTVKVIRNKQTAQSEGYGFVEFFSREAAEEVLQSYNG 180

Query: 181 AIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGA 240
           A MPNTE PFRLNWATFSA DRR DT SDLSIFVGDLA DVTD MLQETF SRY+SVKGA
Sbjct: 181 AAMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFGSRYSSVKGA 240

Query: 241 KVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYS 300
           KVV+D+N+GRSKGYGFVRFGDENER+RA+TEMNG YCSSRPMRIGVATPKK+  YQQ YS
Sbjct: 241 KVVLDANTGRSKGYGFVRFGDENERSRAITEMNGAYCSSRPMRIGVATPKKSPAYQQQYS 300

Query: 301 SQALVLAGGGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVK 360
           SQALVLAGGG  +NG   QGSQ D E+NNTTIFVGGLDSDV+DEDL+QPFS+FG+VVSVK
Sbjct: 301 SQALVLAGGGHASNGAVAQGSQFDSETNNTTIFVGGLDSDVNDEDLRQPFSQFGEVVSVK 360

Query: 361 IPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGR 420
           IP+GK CGFVQFANRK+AE+A+Q LNGTVIGKQTVRLSWGRS GNKQWR DS+NQWNG  
Sbjct: 361 IPVGKACGFVQFANRKDAENAMQMLNGTVIGKQTVRLSWGRSQGNKQWRSDSSNQWNGAH 420

Query: 421 YGGQGYGGGYYSVPQHQDANMHATTAAVNGSS 436
           YGGQGYGG  ++ PQ QD +MHA  AAV+G+S
Sbjct: 421 YGGQGYGGYGHAAPQSQDLSMHA-AAAVHGAS 449

[Close]

BLAST of Lsi10G003040 vs. TrEMBL
Match: A0A061E7J7_THECC (RNA-binding protein 47A OS=Theobroma cacao GN=TCM_007024 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 6.3e-165
Identity = 323/441 (73.24%), Postives = 364/441 (82.54%), Query Frame = 1


Query: 3   QPSNGADLNPQAPHPHHQWFQQQQQYQQQWM------AMQYPAAAMAMMHQQQMMMYPPQ 62
           Q +NG DLN +   P  Q   QQ Q   QW+      AMQYPAAAM MM QQQMMMYP  
Sbjct: 2   QSTNGPDLNSKQQQPPQQQGSQQLQQPPQWVPNQWMGAMQYPAAAMVMM-QQQMMMYP-H 61

Query: 63  HYMTYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYL 122
           HYM Y++H +Q QQ QQQQ  Q+QQQQQ   Q+ ++  +TDEVKT+W+GDL  WMDETYL
Sbjct: 62  HYMPYNNHHFQYQQYQQQQ--QKQQQQQGYLQKQQQGSNTDEVKTIWVGDLVHWMDETYL 121

Query: 123 NNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLN 182
           + CF+HTGEV SVK+I NKQTGQSEGYGF+EFYS A A+KVLQ++NG++MPNTE PFRLN
Sbjct: 122 HGCFSHTGEVSSVKIIRNKQTGQSEGYGFIEFYSRAAAEKVLQSFNGSLMPNTEQPFRLN 181

Query: 183 WATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKG 242
           WA+FS  +RR D GSDLSIFVGDLAADVTD +L ETFS R+ SVKGAKVVIDSN+GRSKG
Sbjct: 182 WASFSVTERRSDAGSDLSIFVGDLAADVTDTILHETFSGRFQSVKGAKVVIDSNTGRSKG 241

Query: 243 YGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHA 302
           YGFVRF DENER+RAMTEMNG+YCSSRPMRIGVATPKKASGYQQ YSSQALVLAGG G +
Sbjct: 242 YGFVRFSDENERSRAMTEMNGVYCSSRPMRIGVATPKKASGYQQQYSSQALVLAGGHG-S 301

Query: 303 NGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFA 362
           NG   QGSQSD +SNN TIFVGGLDSDVSD+DL+QPFS+FGD++SVKIP GKGCGFVQFA
Sbjct: 302 NGAVAQGSQSDNDSNNATIFVGGLDSDVSDDDLRQPFSQFGDIISVKIPPGKGCGFVQFA 361

Query: 363 NRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGG-GY-Y 422
           NRKNAEDAIQ LNGT IGKQTVRLSWGRS GNKQWRGDS NQWNGG Y GQGYGG GY Y
Sbjct: 362 NRKNAEDAIQSLNGTTIGKQTVRLSWGRSLGNKQWRGDSGNQWNGGYYRGQGYGGYGYGY 421

Query: 423 SVPQHQDANMHATTAAVNGSS 436
           + P +QD +M+A  AAV G+S
Sbjct: 422 ATPPNQDPSMYA-AAAVPGAS 436

[Close]

BLAST of Lsi10G003040 vs. TrEMBL
Match: F6HQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00850 PE=4 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 2.3e-162
Identity = 312/436 (71.56%), Postives = 348/436 (79.82%), Query Frame = 1


Query: 3   QPSNGADLNPQAPHPHHQWFQQQQQYQQQ---WMAMQYPAAAMAMMHQQQMMMYPPQHYM 62
           Q SNG D++      H QW QQQQQ QQQ   WMAMQYPAAAM M HQ   MMYP QHYM
Sbjct: 2   QTSNGGDMSQD----HQQWMQQQQQQQQQQQQWMAMQYPAAAMVMQHQ---MMYP-QHYM 61

Query: 63  TYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNC 122
            Y HHP   QQ Q Q P  Q              GSTDE+KTLW+GDL  WMD+ YL  C
Sbjct: 62  PY-HHPQPPQQYQNQPPQHQMH------------GSTDEIKTLWVGDLHQWMDDNYLRTC 121

Query: 123 FAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWAT 182
           F HTGEV S+K+I NKQTGQSEGYGFVEF+S ATA+K+L +YNG +MPNTE PFRLNWAT
Sbjct: 122 FGHTGEVSSIKIIRNKQTGQSEGYGFVEFFSRATAEKILHSYNGTLMPNTEQPFRLNWAT 181

Query: 183 FSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGF 242
           FS  DRR D GSDLSIFVGDLA+DVTDA+LQETF++RY SVKGAKVV DSN+GRSKGYGF
Sbjct: 182 FSTGDRRTDAGSDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGF 241

Query: 243 VRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGM 302
           VRFGDENER+RAM EMNGIYCSSRPMRIGVATPKKASGYQQ YSSQALVLAGG   +NG 
Sbjct: 242 VRFGDENERSRAMNEMNGIYCSSRPMRIGVATPKKASGYQQQYSSQALVLAGGNA-SNGA 301

Query: 303 AVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRK 362
             QGSQ++G+S NTTIFVGGLDS+V+DEDL+Q FS+FG+VVSVKIP+GKGCGFVQFANR 
Sbjct: 302 VAQGSQANGDSTNTTIFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRN 361

Query: 363 NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGY-YSVPQ 422
           +AEDA+Q LNGTVIGKQTVRLSWGR+  +KQWR DSNNQWNG  YGGQGYGGGY Y++PQ
Sbjct: 362 SAEDALQRLNGTVIGKQTVRLSWGRNPASKQWRNDSNNQWNGAYYGGQGYGGGYGYAMPQ 414

Query: 423 HQDANMHATTAAVNGS 435
           + D NM+A  A    S
Sbjct: 422 N-DPNMYAAAATYGAS 414

[Close]

BLAST of Lsi10G003040 vs. TrEMBL
Match: B9HRX8_POPTR (RNA-binding protein 47 OS=Populus trichocarpa GN=POPTR_0009s10820g PE=4 SV=2)

HSP 1 Score: 577.8 bits (1488), Expect = 1.1e-161
Identity = 318/443 (71.78%), Postives = 357/443 (80.59%), Query Frame = 1


Query: 3   QPSNGADLNPQAPH-PHH----QWF--QQQQQYQQQWMA-MQYPAAAMAMMHQQQMMMYP 62
           Q SNG D NP   H PHH    QW    QQQQ QQQWMA MQYPAAAM MM QQQMMMYP
Sbjct: 2   QQSNGPDQNPSPQHQPHHPHQQQWVPHMQQQQQQQQWMAAMQYPAAAMVMM-QQQMMMYP 61

Query: 63  PQ---HYMTYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWM 122
            Q   HYM Y H   QQ Q+QQQQ  Q+QQ+Q  Q      QGS +E KT+W+GDL  WM
Sbjct: 62  QQQHHHYMAYYHQQQQQYQKQQQQYHQKQQKQLQQ------QGSNEEAKTVWVGDLLHWM 121

Query: 123 DETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTEL 182
           DETYL+NCF+HTGEV SVK+I NKQTGQ EGYGFVEFYSHA A+KVLQ+Y+G++MPNT+ 
Sbjct: 122 DETYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSHAAAEKVLQSYSGSMMPNTDQ 181

Query: 183 PFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNS 242
           PFRLNWA+F A +RR D GSDLSIFVGDLAADVTDAMLQETF+++Y SVKGAKVV DSN+
Sbjct: 182 PFRLNWASF-AGERRADAGSDLSIFVGDLAADVTDAMLQETFATKYASVKGAKVVADSNT 241

Query: 243 GRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAG 302
           GRSKGYGFVRFGDENE+TRA+TEMNG YCSSRPMRIGVATPKK S YQQ YSSQALVLAG
Sbjct: 242 GRSKGYGFVRFGDENEKTRAITEMNGAYCSSRPMRIGVATPKKPSAYQQQYSSQALVLAG 301

Query: 303 GGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCG 362
           G   +NG   QGSQSDG+SNNTTIFVGG+DSDV+DEDL+QPFS+FG+VVSVK+P GKGC 
Sbjct: 302 GHA-SNGTMAQGSQSDGDSNNTTIFVGGIDSDVTDEDLRQPFSQFGEVVSVKMPTGKGCA 361

Query: 363 FVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGG 422
           FVQFANRKNAEDA+Q LNGT IGKQTVRLSWGR+  NKQWRGD  NQW+G  +GGQGY G
Sbjct: 362 FVQFANRKNAEDALQSLNGTTIGKQTVRLSWGRTPANKQWRGDHGNQWHGAYFGGQGYAG 421

Query: 423 GYYSVPQHQDANMHATTAAVNGS 435
             Y++P +QD  M+   AA   S
Sbjct: 422 YGYAMPPNQDPGMYVAAAASGAS 435

[Close]

BLAST of Lsi10G003040 vs. TrEMBL
Match: A0A067JJK7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01681 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 8.0e-160
Identity = 318/440 (72.27%), Postives = 360/440 (81.82%), Query Frame = 1


Query: 3   QPSNGADLNPQAPHPHHQ-WFQQQQQYQQQ--WMA-MQYPAAAMAMMHQQQMMMYPPQ-- 62
           Q +NG DLNP +     Q W    QQ+QQQ  WMA MQYPAAAM MM QQQMMMYP Q  
Sbjct: 2   QQTNGPDLNPASTQQQQQQWIPHVQQHQQQQPWMAAMQYPAAAMVMM-QQQMMMYPQQQH 61

Query: 63  HYMTYSHHPYQQQQQ-QQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETY 122
           HYM Y    YQQ QQ Q+QQ  +  QQQQ + Q P    + ++VKT+WIGDL  WMDE Y
Sbjct: 62  HYMAY----YQQHQQYQKQQHYKNYQQQQQKPQLP----AAEDVKTIWIGDLLNWMDEPY 121

Query: 123 LNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRL 182
           L+NCF+HTGEV +VKVI NKQTGQSEGYGFVEF+SHATA+KVLQNYNG++MPNTE PFRL
Sbjct: 122 LHNCFSHTGEVSTVKVIRNKQTGQSEGYGFVEFHSHATAEKVLQNYNGSVMPNTEQPFRL 181

Query: 183 NWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSK 242
           NWA+F A DRR D+GSDLSIFVGDLA DVTD+MLQETF+S+Y+SVKGAKVV D N+GRSK
Sbjct: 182 NWASF-AGDRRADSGSDLSIFVGDLATDVTDSMLQETFASKYSSVKGAKVVTDLNTGRSK 241

Query: 243 GYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGH 302
           GYGFVRFGDENER+RAM+EMNG+YCSSRPMRIGVATPKK+S YQQ YSSQALVLAGG  H
Sbjct: 242 GYGFVRFGDENERSRAMSEMNGVYCSSRPMRIGVATPKKSSAYQQQYSSQALVLAGG--H 301

Query: 303 A-NGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQ 362
           A NG   QGSQSDG+SNNTTIFVGG+DSD+SDEDL+QPFS+FG+VVSVKIP+GKGCGFVQ
Sbjct: 302 APNGAIAQGSQSDGDSNNTTIFVGGIDSDISDEDLRQPFSQFGEVVSVKIPVGKGCGFVQ 361

Query: 363 FANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYY 422
           FANRKNAEDA+Q LNGT IGKQTVRLSWGRS  NKQWRGD ++QWNG  +GGQ YGG  Y
Sbjct: 362 FANRKNAEDALQSLNGTTIGKQTVRLSWGRSPANKQWRGDHHSQWNGAYFGGQAYGGYGY 421

Query: 423 SVPQHQDANMHATTAAVNGS 435
            +  +QD NM+   AA   S
Sbjct: 422 PMAPNQDQNMYMAAAASGAS 429

[Close]

BLAST of Lsi10G003040 vs. TAIR10
Match: AT3G19130.1 (AT3G19130.1 RNA-binding protein 47B)

HSP 1 Score: 503.8 bits (1296), Expect = 1.0e-142
Identity = 288/436 (66.06%), Postives = 334/436 (76.61%), Query Frame = 1


Query: 3   QPSNGADL----------NPQAPHPHHQWFQQQQQYQQQWM-AMQY-PAAAMAMMHQQQM 62
           Q +NG+D           N Q P P  QW QQQQQ QQQWM AMQY PAAAM MM QQQM
Sbjct: 2   QTTNGSDSTLATSGATPPNQQTPPPPQQW-QQQQQQQQQWMAAMQYPPAAAMMMMQQQQM 61

Query: 63  MMYPPQHYMTYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPW 122
           +MYP Q Y+ Y+  PYQQ   Q  Q    QQ Q  Q +   R GS D+VKTLW+GDL  W
Sbjct: 62  LMYPHQ-YVPYNQGPYQQHHPQLHQYGSYQQHQHQQHKAIDR-GSGDDVKTLWVGDLLHW 121

Query: 123 MDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTE 182
           MDETYL++CF+HTGEV SVKVI NK T QSEGYGFVEF S A A++VLQNY+G++MPN++
Sbjct: 122 MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSD 181

Query: 183 LPFRLNWATFSANDRRP-DTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDS 242
            PFR+NWA+FS  ++R  + G DLS+FVGDL+ DVTD +L ETFS RY SVK AKVVIDS
Sbjct: 182 QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDS 241

Query: 243 NSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVL 302
           N+GRSKGYGFVRFGDENER+RA+TEMNG YCS+R MR+G+ATPK+A   QQ +SSQA++L
Sbjct: 242 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVIL 301

Query: 303 AGGGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKG 362
           AGG G +NG    GSQSDGES N TIFVGG+D DV DEDL+QPFS+FG+VVSVKIP+GKG
Sbjct: 302 AGGHG-SNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKG 361

Query: 363 CGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGY 422
           CGFVQFA+RK+AEDAI+ LNGTVIGK TVRLSWGRS  NKQWRGDS  QWNGG   G GY
Sbjct: 362 CGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGYSRGHGY 421

Query: 423 --GGGYYSVPQHQDAN 424
             GGGY     H D+N
Sbjct: 422 NNGGGY---ANHHDSN 429

[Close]

BLAST of Lsi10G003040 vs. TAIR10
Match: AT1G49600.1 (AT1G49600.1 RNA-binding protein 47A)

HSP 1 Score: 502.7 bits (1293), Expect = 2.3e-142
Identity = 289/428 (67.52%), Postives = 329/428 (76.87%), Query Frame = 1


Query: 13  QAPHPHHQWFQQQQQYQQQWMA--MQYPAAAMAMMHQQQMMMYPPQHYMTYSHHPYQQQQ 72
           Q+  P  Q  QQQ Q QQQWMA   QYPAAAMAMM QQQMMMYP   Y  Y+   YQQ  
Sbjct: 29  QSTPPPQQQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHP 88

Query: 73  QQQQQPSQQQQQQQAQSQRPRRQGST-DEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSV 132
           Q Q    QQQQQQ  QSQ+  R GS  D+VKTLW+GDL  WMDETYL+ CF+HT EV SV
Sbjct: 89  QFQYAAYQQQQQQHHQSQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSV 148

Query: 133 KVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSANDRRP-D 192
           KVI NKQT QSEGYGFVEF S + A++ LQ+++G  MPN E PFRLNWA+FS  ++R  +
Sbjct: 149 KVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASE 208

Query: 193 TGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENER 252
            G DLSIFVGDLA DV+DA+L ETF+ RY SVKGAKVVIDSN+GRSKGYGFVRFGDENER
Sbjct: 209 NGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENER 268

Query: 253 TRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGMAVQGSQSDG 312
           +RAMTEMNG +CSSR MR+G+ATPK+A+ Y Q   SQAL LAGG G        GS SDG
Sbjct: 269 SRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGG------NGSMSDG 328

Query: 313 ESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGL 372
           ESNN+TIFVGGLD+DV++EDL QPFS FG+VVSVKIP+GKGCGFVQFANR++AE+AI  L
Sbjct: 329 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNL 388

Query: 373 NGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYYSVPQHQDANMHAT- 432
           NGTVIGK TVRLSWGRS  NKQWR DS NQWNGG   GQGY  GY     +QD+NM+AT 
Sbjct: 389 NGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGYSRGQGYNNGY----ANQDSNMYATA 445

Query: 433 TAAVNGSS 436
            AAV G+S
Sbjct: 449 AAAVPGAS 445

[Close]

BLAST of Lsi10G003040 vs. TAIR10
Match: AT1G47500.1 (AT1G47500.1 RNA-binding protein 47C')

HSP 1 Score: 396.7 bits (1018), Expect = 1.8e-110
Identity = 234/416 (56.25%), Postives = 278/416 (66.83%), Query Frame = 1


Query: 6   NGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHHP 65
           N    +P  P PH  W             M+YP   M  M      MY P   M +S  P
Sbjct: 39  NQPKTSPTPPPPH--W-------------MRYPPVLMPQM------MYAPPPPMPFS--P 98

Query: 66  YQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF--AHT 125
           Y Q       P+      Q++  +  +     E KT+W+GDLQ WMDE YLN+ F  A  
Sbjct: 99  YHQY------PNHHHFHHQSRGNK-HQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEE 158

Query: 126 GEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSAN 185
            E+ S+KVI NK  G SEGYGFVEF SH  ADKVLQ +NGA MPNT+ PFRLNWA+FS  
Sbjct: 159 REIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTG 218

Query: 186 DRR-PDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRF 245
           ++R  + G DLSIFVGDLA DV+DA+L ETFS +Y SVK AKVV+D+N+GRSKGYGFVRF
Sbjct: 219 EKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 278

Query: 246 GDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGMAVQ 305
           GDENERT+AMTEMNG+ CSSR MRIG ATP+K +GYQQ            GG+    A  
Sbjct: 279 GDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ-----------GGYMPSGAF- 338

Query: 306 GSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAE 365
            ++S+G++ NTTIFVGGLDS V+DEDLKQPFS+FG++VSVKIP+GKGCGFVQF NR NAE
Sbjct: 339 -TRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAE 398

Query: 366 DAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYYSVPQ 419
           +A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y G  Y VPQ
Sbjct: 399 EALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQ 411

[Close]

BLAST of Lsi10G003040 vs. TAIR10
Match: AT1G47490.1 (AT1G47490.1 RNA-binding protein 47C)

HSP 1 Score: 374.8 bits (961), Expect = 7.3e-104
Identity = 226/419 (53.94%), Postives = 277/419 (66.11%), Query Frame = 1


Query: 9   DLNPQAPHPHHQWFQQQQQYQQQWMA------MQYPAAAMAMMHQQQMMMYPPQHYMTYS 68
           D  P  P P  Q   ++++ Q +         M+YP   + + HQ   MMY P  +  Y 
Sbjct: 20  DNQPPPPPPPPQQPAKEEENQPKTSPTPPPHWMRYPPTVI-IPHQ---MMYAPPPFPPYH 79

Query: 69  HHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAH 128
            +P       Q + ++ Q     ++            KT+W+GDL  WMDE YLN+ FA 
Sbjct: 80  QYPNHHHLHHQSRGNKHQNAFNGEN------------KTIWVGDLHHWMDEAYLNSSFAS 139

Query: 129 TGE--VFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATF 188
             E  + SVKVI NK  G SEGYGFVEF SH  ADKVL+ +NG  MPNT+ PFRLNWA+F
Sbjct: 140 GDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASF 199

Query: 189 SANDRR-PDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGF 248
           S  ++R  + G DLSIFVGDL+ DV+D +L ETFS +Y SVK AKVV+D+N+GRSKGYGF
Sbjct: 200 STGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGF 259

Query: 249 VRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGM 308
           VRFGDENERT+AMTEMNG+ CSSR MRIG ATP+K +GYQQ           GG   NG 
Sbjct: 260 VRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ----------GGYMPNGT 319

Query: 309 AVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRK 368
               ++ +G+  NTTIFVGGLDS V+DEDLKQPF++FG++VSVKIP+GKGCGFVQF NR 
Sbjct: 320 L---TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRP 379

Query: 369 NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGGYYSVPQ 419
           NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y G  Y VPQ
Sbjct: 380 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQ 409

[Close]

BLAST of Lsi10G003040 vs. TAIR10
Match: AT4G27000.1 (AT4G27000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 339.0 bits (868), Expect = 4.4e-93
Identity = 216/430 (50.23%), Postives = 256/430 (59.53%), Query Frame = 1


Query: 1   MAQP---SNGADLNP-QAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQ 60
           M QP   SNGA   P Q P     + QQQQ     WM          M HQQQ    PP 
Sbjct: 2   MQQPPPASNGAATGPGQIPSDQQAYLQQQQS----WM----------MQHQQQQQGQPPA 61

Query: 61  HYMTYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYL 120
            +            QQ    S Q QQQQ      +  GS  E+++LWIGDLQPWMDE YL
Sbjct: 62  GW-----------NQQSAPSSGQPQQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYL 121

Query: 121 NNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLN 180
            N F  TGE  + KVI NKQ G SEGYGF+EF +HATA++ LQ YNGA MP++E  FRLN
Sbjct: 122 MNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLN 181

Query: 181 WATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKG 240
           WA   A +RR   G + ++FVGDLA DVTD ML ETF + Y+SVKGAKVV D  +GRSKG
Sbjct: 182 WAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKG 241

Query: 241 YGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHA 300
           YGFVRF DE+E+ RAMTEMNG YCSSRPMR G A  KK    Q                A
Sbjct: 242 YGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP---------------A 301

Query: 301 NGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFA 360
           +    QG+  + +  NTTIFVG +D  V+++DLK  F +FG++V VKIP GK CGFVQ+A
Sbjct: 302 SYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYA 361

Query: 361 NRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGG---QGYGG-G 420
           NR  AE A+  LNGT +G Q++RLSWGRS  NKQ + D      GG Y G   QGY   G
Sbjct: 362 NRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEAYG 391

Query: 421 YYSVPQHQDA 423
           Y   PQ  +A
Sbjct: 422 YAPPPQDPNA 391

[Close]

BLAST of Lsi10G003040 vs. NCBI nr
Match: gi|778669135|ref|XP_004145357.2| (PREDICTED: polyadenylate-binding protein RBP47 [Cucumis sativus])

HSP 1 Score: 804.3 bits (2076), Expect = 1.1e-229
Identity = 415/439 (94.53%), Postives = 420/439 (95.67%), Query Frame = 1


Query: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQM+MYPPQHYM 
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMVMYPPQHYMA 60

Query: 61  YSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF 120
           YSHHPYQQQQQQQQQPS QQQQQ AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF
Sbjct: 61  YSHHPYQQQQQQQQQPSSQQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF 120

Query: 121 AHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATF 180
           AHTGEV SVKVICNKQTGQSEGYGFVEF+SH TA+KVLQNYNG IMPNTELPFRLNWATF
Sbjct: 121 AHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPFRLNWATF 180

Query: 181 SANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFV 240
           SANDRRPDTGSDLSIFVGDLAADVTDA+LQETFSSRYTSVKGAKVVIDSNSGRSKGYGFV
Sbjct: 181 SANDRRPDTGSDLSIFVGDLAADVTDAILQETFSSRYTSVKGAKVVIDSNSGRSKGYGFV 240

Query: 241 RFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGMA 300
           RFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGY+SQALVLA  GGH NGMA
Sbjct: 241 RFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLA--GGHPNGMA 300

Query: 301 VQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKN 360
           VQGSQSD ESNNTTIFVGGLDSDVSDEDLKQ FSKFGDVVSVKIPIGKGCGFVQFANRKN
Sbjct: 301 VQGSQSDSESNNTTIFVGGLDSDVSDEDLKQAFSKFGDVVSVKIPIGKGCGFVQFANRKN 360

Query: 361 AEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYG--GGYYSVPQ 420
           AEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQ YG  GGYYSVPQ
Sbjct: 361 AEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQ 420

Query: 421 HQDANMH--ATTAAVNGSS 436
           HQD NMH  A  AAVNGSS
Sbjct: 421 HQDPNMHPTAAAAAVNGSS 437

[Close]

BLAST of Lsi10G003040 vs. NCBI nr
Match: gi|659118615|ref|XP_008459212.1| (PREDICTED: polyadenylate-binding protein RBP47 [Cucumis melo])

HSP 1 Score: 799.3 bits (2063), Expect = 3.4e-228
Identity = 412/441 (93.42%), Postives = 418/441 (94.78%), Query Frame = 1


Query: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYM 
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMA 60

Query: 61  YSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF 120
           YSHHPYQQQQQQQQQPS QQQQQ AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF
Sbjct: 61  YSHHPYQQQQQQQQQPSSQQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF 120

Query: 121 AHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATF 180
           AHTGEV SVKVICNKQTGQSEGYGFVEF+SH TA+KVLQNYNG IMPNTELPFRLNWATF
Sbjct: 121 AHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPFRLNWATF 180

Query: 181 SANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFV 240
           SANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFV
Sbjct: 181 SANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFV 240

Query: 241 RFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGGGHANGMA 300
           RFGDENERTRAM EMNGIYCSSRPMRIGVATPKKASGYQQGY+SQALVLA  GGH NGMA
Sbjct: 241 RFGDENERTRAMAEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLA--GGHPNGMA 300

Query: 301 VQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKN 360
           VQGSQSD ESNNTTIFVGGLDSDVSDEDLK  FSKFGDV+SVKIPIGKGCGFVQFANRKN
Sbjct: 301 VQGSQSDSESNNTTIFVGGLDSDVSDEDLKLAFSKFGDVISVKIPIGKGCGFVQFANRKN 360

Query: 361 AEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYG--GGYYSVPQ 420
           AEDA+QGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQ YG  GGYYSVPQ
Sbjct: 361 AEDALQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQ 420

Query: 421 HQDANMH----ATTAAVNGSS 436
           HQD N+H    A  AAVNGSS
Sbjct: 421 HQDPNIHPTAAAAAAAVNGSS 439

[Close]

BLAST of Lsi10G003040 vs. NCBI nr
Match: gi|595792207|ref|XP_007199852.1| (hypothetical protein PRUPE_ppa005661mg [Prunus persica])

HSP 1 Score: 594.3 bits (1531), Expect = 1.7e-166
Identity = 326/452 (72.12%), Postives = 367/452 (81.19%), Query Frame = 1


Query: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQ-------YQQQWMAMQYPAAAMAMMHQQQMMMY 60
           MAQ SNG DL  Q      Q  QQQQQ       +QQQWMAMQYPAAAMAMM QQQMM+Y
Sbjct: 1   MAQQSNGGDLGTQQQQQQQQQQQQQQQQWMHQHQHQQQWMAMQYPAAAMAMM-QQQMMVY 60

Query: 61  PPQHYMTYS------HHPYQQQQQQQQQ--PSQQQQQ--QQAQSQRPRRQGSTDEVKTLW 120
           P QHYM Y+      HHP+    QQQ Q  P QQQQQ  +Q Q    ++QG TDE++T+W
Sbjct: 61  P-QHYMPYAAAAAHPHHPHHNPYQQQPQGVPYQQQQQPPKQLQQSPSQKQGPTDEIRTIW 120

Query: 121 IGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNG 180
           +GDL  WMDETYL+ CFAHTG+V +VKVI NKQT QSEGYGFVEF+S   A++VLQ+YNG
Sbjct: 121 VGDLHHWMDETYLHGCFAHTGQVSTVKVIRNKQTAQSEGYGFVEFFSREAAEEVLQSYNG 180

Query: 181 AIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGA 240
           A MPNTE PFRLNWATFSA DRR DT SDLSIFVGDLA DVTD MLQETF SRY+SVKGA
Sbjct: 181 AAMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFGSRYSSVKGA 240

Query: 241 KVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYS 300
           KVV+D+N+GRSKGYGFVRFGDENER+RA+TEMNG YCSSRPMRIGVATPKK+  YQQ YS
Sbjct: 241 KVVLDANTGRSKGYGFVRFGDENERSRAITEMNGAYCSSRPMRIGVATPKKSPAYQQQYS 300

Query: 301 SQALVLAGGGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVK 360
           SQALVLAGGG  +NG   QGSQ D E+NNTTIFVGGLDSDV+DEDL+QPFS+FG+VVSVK
Sbjct: 301 SQALVLAGGGHASNGAVAQGSQFDSETNNTTIFVGGLDSDVNDEDLRQPFSQFGEVVSVK 360

Query: 361 IPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGR 420
           IP+GK CGFVQFANRK+AE+A+Q LNGTVIGKQTVRLSWGRS GNKQWR DS+NQWNG  
Sbjct: 361 IPVGKACGFVQFANRKDAENAMQMLNGTVIGKQTVRLSWGRSQGNKQWRSDSSNQWNGAH 420

Query: 421 YGGQGYGGGYYSVPQHQDANMHATTAAVNGSS 436
           YGGQGYGG  ++ PQ QD +MHA  AAV+G+S
Sbjct: 421 YGGQGYGGYGHAAPQSQDLSMHA-AAAVHGAS 449

[Close]

BLAST of Lsi10G003040 vs. NCBI nr
Match: gi|645262113|ref|XP_008236617.1| (PREDICTED: polyadenylate-binding protein RBP47-like isoform X1 [Prunus mume])

HSP 1 Score: 594.0 bits (1530), Expect = 2.2e-166
Identity = 326/453 (71.96%), Postives = 366/453 (80.79%), Query Frame = 1


Query: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQ-------YQQQWMAMQYPAAAMAMMHQQQMMMY 60
           MAQ SNG DL  Q      Q  QQQQQ       +QQQWMAMQYPAAAMAMM QQQMM+Y
Sbjct: 1   MAQQSNGGDLGTQQQQQQQQQQQQQQQQWMHQHQHQQQWMAMQYPAAAMAMM-QQQMMVY 60

Query: 61  PPQHYMTYS------HHPYQQQQQQQQQ--PSQQQQQQ---QAQSQRPRRQGSTDEVKTL 120
           P QHYM Y+      HHP+    QQQ Q  P QQQQQQ   Q Q    ++QG TDE++T+
Sbjct: 61  P-QHYMPYAAAAGHPHHPHHNPYQQQPQGVPYQQQQQQPPKQLQQSPSQKQGPTDEIRTI 120

Query: 121 WIGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYN 180
           W+GDL  WMDETYL+ CFAHTG+V +VKVI NKQT QSEGYGFVEF+S   A++VLQ+YN
Sbjct: 121 WVGDLHHWMDETYLHGCFAHTGQVSTVKVIRNKQTAQSEGYGFVEFFSREAAEEVLQSYN 180

Query: 181 GAIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKG 240
           GA MPNTE PFRLNWATFS  DRR DT SDLSIFVGDLA DVTD MLQETF SRY+SVKG
Sbjct: 181 GAAMPNTEQPFRLNWATFSVGDRRADTSSDLSIFVGDLATDVTDTMLQETFGSRYSSVKG 240

Query: 241 AKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGY 300
           AKVV+D+N+GRSKGYGFVRFGDENER+RA+TEMNG YCSSRPMRIGVATPKK+  YQQ Y
Sbjct: 241 AKVVLDANTGRSKGYGFVRFGDENERSRAITEMNGAYCSSRPMRIGVATPKKSPAYQQQY 300

Query: 301 SSQALVLAGGGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSV 360
           SSQALVLAGGG  +NG   QGSQ D E+NNTTIFVGGLDSDV+DEDL+QPFS+FG+VVSV
Sbjct: 301 SSQALVLAGGGHASNGAVAQGSQFDSETNNTTIFVGGLDSDVNDEDLRQPFSQFGEVVSV 360

Query: 361 KIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGG 420
           KIP+GK CGFVQFANRK+AE+A+Q LNGTVIGKQTVRLSWGRS GNKQWR DS+NQWNG 
Sbjct: 361 KIPVGKACGFVQFANRKDAENAMQMLNGTVIGKQTVRLSWGRSQGNKQWRSDSSNQWNGA 420

Query: 421 RYGGQGYGGGYYSVPQHQDANMHATTAAVNGSS 436
            YGGQGYGG  ++ PQ QD +MHA  AAV+G+S
Sbjct: 421 HYGGQGYGGYGHAAPQSQDLSMHA-AAAVHGAS 450

[Close]

BLAST of Lsi10G003040 vs. NCBI nr
Match: gi|657999742|ref|XP_008392304.1| (PREDICTED: polyadenylate-binding protein RBP47 [Malus domestica])

HSP 1 Score: 594.0 bits (1530), Expect = 2.2e-166
Identity = 331/449 (73.72%), Postives = 366/449 (81.51%), Query Frame = 1


Query: 1   MAQPSNG-ADLN-PQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHY 60
           MAQ SNG +DL  PQ      Q  QQQ  +QQQWMAMQYPAAAMAMM QQQMM+YP QHY
Sbjct: 1   MAQQSNGGSDLGTPQHQQQQQQHHQQQWMHQQQWMAMQYPAAAMAMM-QQQMMVYP-QHY 60

Query: 61  MTYS---HHP----YQQQQQ-----QQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGD 120
           M Y    HHP    YQQQ Q     QQQQP +Q QQQQ+ SQ+   QG  DEV+T+W+GD
Sbjct: 61  MPYGAAPHHPHPNPYQQQPQAVAYQQQQQPPKQLQQQQSPSQK---QGPNDEVRTIWVGD 120

Query: 121 LQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIM 180
           L  WMDETYL+ CFAHTG+V S+KVI NKQTGQSEGYGFVEFYS   A++VLQNYNG  M
Sbjct: 121 LHHWMDETYLHGCFAHTGQVSSIKVIRNKQTGQSEGYGFVEFYSREAAEEVLQNYNGTAM 180

Query: 181 PNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVV 240
           PNTE PFRLNWATFSA DRR DT +DLSIFVGDLA DVTD MLQETFSSRY+SVKGAKVV
Sbjct: 181 PNTEQPFRLNWATFSAGDRRADTSADLSIFVGDLATDVTDTMLQETFSSRYSSVKGAKVV 240

Query: 241 IDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQA 300
           +D+N+GRSKGYGFVRFGDENER+RA+ EMNG YCSSR MRIGVATPKKA  YQQ YSSQA
Sbjct: 241 LDANTGRSKGYGFVRFGDENERSRAIAEMNGAYCSSRAMRIGVATPKKAPAYQQQYSSQA 300

Query: 301 LVLAGGGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPI 360
           LVLAGGG  +NG   QGSQ D E NNTTIFVGGLDS+V+DEDL+ PFS FG+VVSVKIP+
Sbjct: 301 LVLAGGGHASNGAVAQGSQFDSEPNNTTIFVGGLDSEVNDEDLRLPFSHFGEVVSVKIPV 360

Query: 361 GKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGG 420
           GK CGFVQFANRK+AE+AIQ LNGTVIGKQTVRLSWGRS GNKQWR DS+NQWNG  YGG
Sbjct: 361 GKACGFVQFANRKDAENAIQMLNGTVIGKQTVRLSWGRSQGNKQWRSDSSNQWNGAHYGG 420

Query: 421 QGYGGGYYSVPQHQDANMHATTAAVNGSS 436
           QGYGG  ++VPQ +D +MH T AAVNG+S
Sbjct: 421 QGYGGYGHAVPQGEDLSMH-TAAAVNGAS 443

The following BLAST results are available for this feature:

BLAST of Lsi10G003040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBP47_NICPL	2.0e-143	63.99	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 S...	[more]
RB47B_ARATH	1.8e-141	66.06	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1	[more]
RB47A_ARATH	4.1e-141	67.52	Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1	[more]
R47CP_ARATH	3.2e-109	56.25	Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV...	[more]
RB47C_ARATH	1.3e-102	53.94	Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1	[more]

BLAST of Lsi10G003040 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VJS3_PRUPE	1.2e-166	72.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005661mg PE=4 SV=1	[more]
A0A061E7J7_THECC	6.3e-165	73.24	RNA-binding protein 47A OS=Theobroma cacao GN=TCM_007024 PE=4 SV=1	[more]
F6HQD9_VITVI	2.3e-162	71.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00850 PE=4 SV=...	[more]
B9HRX8_POPTR	1.1e-161	71.78	RNA-binding protein 47 OS=Populus trichocarpa GN=POPTR_0009s10820g PE=4 SV=2	[more]
A0A067JJK7_JATCU	8.0e-160	72.27	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01681 PE=4 SV=1	[more]

BLAST of Lsi10G003040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19130.1	1.0e-142	66.06	RNA-binding protein 47B	[more]
AT1G49600.1	2.3e-142	67.52	RNA-binding protein 47A	[more]
AT1G47500.1	1.8e-110	56.25	RNA-binding protein 47C'	[more]
AT1G47490.1	7.3e-104	53.94	RNA-binding protein 47C	[more]
AT4G27000.1	4.4e-93	50.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Lsi10G003040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669135\|ref\|XP_004145357.2\|	1.1e-229	94.53	PREDICTED: polyadenylate-binding protein RBP47 [Cucumis sativus]	[more]
gi\|659118615\|ref\|XP_008459212.1\|	3.4e-228	93.42	PREDICTED: polyadenylate-binding protein RBP47 [Cucumis melo]	[more]
gi\|595792207\|ref\|XP_007199852.1\|	1.7e-166	72.12	hypothetical protein PRUPE_ppa005661mg [Prunus persica]	[more]
gi\|645262113\|ref\|XP_008236617.1\|	2.2e-166	71.96	PREDICTED: polyadenylate-binding protein RBP47-like isoform X1 [Prunus mume]	[more]
gi\|657999742\|ref\|XP_008392304.1\|	2.2e-166	73.72	PREDICTED: polyadenylate-binding protein RBP47 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G003040.1	Lsi10G003040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 102..171 score: 2.4E-13coord: 315..378 score: 1.9E-19coord: 195..265 score: 6.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 314..381 score: 4.0E-22coord: 194..268 score: 3.2E-18coord: 101..174 score: 2.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 100..180 score: 14.181coord: 313..385 score: 18.479coord: 193..272 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 66..178 score: 3.4E-23coord: 184..282 score: 1.1E-22coord: 303..400 score: 2.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 305..413 score: 3.09E-31coord: 175..297 score: 7.12E-24coord: 65..183 score: 5.1
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 170..278 score: 9.0E-157coord: 304..432 score: 9.0E
None	No IPR available	PANTHER	PTHR24012:SF403	POLYADENYLATE-BINDING PROTEIN RBP47A	coord: 170..278 score: 9.0E-157coord: 304..432 score: 9.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G003040	Csa2G234550	Cucumber (Chinese Long) v2	culsiB093
Lsi10G003040	CSPI02G11600	Wild cucumber (PI 183967)	cpilsiB091
Lsi10G003040	Cucsa.085240	Cucumber (Gy14) v1	cgylsiB092
Lsi10G003040	CmaCh20G008920	Cucurbita maxima (Rimu)	cmalsiB507
Lsi10G003040	CmaCh02G004430	Cucurbita maxima (Rimu)	cmalsiB548
Lsi10G003040	CmoCh02G004500	Cucurbita moschata (Rifu)	cmolsiB533
Lsi10G003040	CmoCh20G008990	Cucurbita moschata (Rifu)	cmolsiB491
Lsi10G003040	Cla010259	Watermelon (97103) v1	lsiwmB043
Lsi10G003040	MELO3C021906	Melon (DHL92) v3.5.1	lsimeB057
Lsi10G003040	ClCG09G017440	Watermelon (Charleston Gray)	lsiwcgB034
Lsi10G003040	MELO3C021906.2	Melon (DHL92) v3.6.1	lsimedB059
Lsi10G003040	Cla97C09G178870	Watermelon (97103) v2	lsiwmbB070
Lsi10G003040	Bhi10G001695	Wax gourd	lsiwgoB080
Lsi10G003040	Cp4.1LG05g12120	Cucurbita pepo (Zucchini)	cpelsiB589
Lsi10G003040	Cp4.1LG16g02040	Cucurbita pepo (Zucchini)	cpelsiB220
Lsi10G003040	CsGy2G011610	Cucumber (Gy14) v2	cgyblsiB086
Lsi10G003040	Carg23614	Silver-seed gourd	carlsiB731
Lsi10G003040	Carg24057	Silver-seed gourd	carlsiB961
Lsi10G003040	CsaV3_2G014110	Cucumber (Chinese Long) v3	cuclsiB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G003040	Wax gourd	lsiwgoB074