Lsi09G004620 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G004620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	chr09 : 4854846 .. 4855465 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTCTCAAAATCCTTCTAAGTTCTCAACATTGTATTTTTTTAATTTCTCTATAAAAAAAAAATGGCAGACAACTCTCAAAAAATGAGCTACCATGTTGGAGAAGCCAAGGGCCAAGCACAGGTTTTCACTTTACTTCCATAATCATTTTATCTTTTAGAATTAAGGAATGAATTGTTCCATAGTCATTTTATCTTTTGGAATTAAGGATTGAATTGGTAATATATTGATTTATTGTGATTATGTAGGAGAAGGCAAGCAATCTGATGGATAAGGCAAGTGATGCAGCCCAATCAGCCAAAGAGTCAATACAAGAGGCAGGACAACAATTGAAGGCTAAAGCACAGGGTGCAGCTGATGCAATCAAAGATGCCACAAGCATGAACAAATGAAGCTTTTTCATTCTCCATTGGTCCCTTTTTTTGTGTTTTGCTCTCGGTGGTTTTCTTCATTTTTGTCTTGTATTAGCCTATCTTCATTTTGTGTGAGAAAAAGCTCTAATGTGGCTCTTGAGCCTTATCTATTCATAAGAATTAGGGCTAAAACATTGTGCCTCTTTTGTATCACGAAAATTTTAATTATAAAATAGAGCATGAAACACCGCATCTTTTTTTCTTTC

mRNA sequence

TTTATTCTCAAAATCCTTCTAAGTTCTCAACATTGTATTTTTTTAATTTCTCTATAAAAAAAAAATGGCAGACAACTCTCAAAAAATGAGCTACCATGTTGGAGAAGCCAAGGGCCAAGCACAGGAGAAGGCAAGCAATCTGATGGATAAGGCAAGTGATGCAGCCCAATCAGCCAAAGAGTCAATACAAGAGGCAGGACAACAATTGAAGGCTAAAGCACAGGGTGCAGCTGATGCAATCAAAGATGCCACAAGCATGAACAAATGAAGCTTTTTCATTCTCCATTGGTCCCTTTTTTTGTGTTTTGCTCTCGGTGGTTTTCTTCATTTTTGTCTTGTATTAGCCTATCTTCATTTTGTGTGAGAAAAAGCTCTAATGTGGCTCTTGAGCCTTATCTATTCATAAGAATTAGGGCTAAAACATTGTGCCTCTTTTGTATCACGAAAATTTTAATTATAAAATAGAGCATGAAACACCGCATCTTTTTTTCTTTC

Coding sequence (CDS)

ATGGCAGACAACTCTCAAAAAATGAGCTACCATGTTGGAGAAGCCAAGGGCCAAGCACAGGAGAAGGCAAGCAATCTGATGGATAAGGCAAGTGATGCAGCCCAATCAGCCAAAGAGTCAATACAAGAGGCAGGACAACAATTGAAGGCTAAAGCACAGGGTGCAGCTGATGCAATCAAAGATGCCACAAGCATGAACAAATGA

Protein sequence

MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIKDATSMNK

Homology

[Close]

BLAST of Lsi09G004620 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.0e-22
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MADNS+KMSYH+GEAKGQAQEKASNLMDKA D AQSAKES+QEAGQQ+KAKAQGAADA+K
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATSMNK 68
          DAT MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi09G004620 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.6e-21
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MADNSQ MSY +GEAKGQAQEKASN+M+KASDAAQSAKESIQE GQQ+KAKAQGAADA+K
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATSMNK 68
          DAT MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi09G004620 vs. TrEMBL
Match: B9T3S3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0447160 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-19
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MADNSQKM+YH GEAKGQ QEKASN+MDKA + AQSAKES+QEAG Q+KAKAQGAADA+K
Sbjct: 1  MADNSQKMAYHAGEAKGQTQEKASNMMDKAGNVAQSAKESMQEAGNQMKAKAQGAADAVK 60

Query: 61 DATSMNK 68
          +AT MNK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of Lsi09G004620 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-18
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MADNSQKMSYH GEAKGQ QEK SN+MDKASDAAQSAKES+QE GQQ+ AKAQGAADA+K
Sbjct: 1  MADNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVK 60

Query: 61 DATS 65
          DA +
Sbjct: 61 DAVN 64

[Close]

BLAST of Lsi09G004620 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.8e-18
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MAD+SQKMSY  GEAKGQ +EKASNLMD A++AAQSAKE+IQEAGQQ+ AKAQGAA+AIK
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATSMNK 68
          DAT MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi09G004620 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 86.3 bits (212), Expect = 8.0e-18
Identity = 47/67 (70.15%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          M++NSQ MS++ G+AKGQ QEKASNL+DKAS+AAQSAKESIQE GQQLK KAQGA++ IK
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATSMNK 68
          + T ++K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of Lsi09G004620 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-17
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          M+ NSQ +S+  G+AKGQ QEKAS +MDKAS+AAQSAKES++E GQQ+K KAQGA +++K
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATSMNK 68
          +AT MNK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of Lsi09G004620 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 76.3 bits (186), Expect = 8.3e-15
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 3  DNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIKDA 62
          DN Q  SY  G+A GQ +EKA  +MDKA DAA SA++S+Q+ GQQ+K KAQGAAD +KD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TSMNK 68
          T MNK
Sbjct: 62 TGMNK 66

[Close]

BLAST of Lsi09G004620 vs. TAIR10
Match: AT5G15970.1 (AT5G15970.1 stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6))

HSP 1 Score: 46.2 bits (108), Expect = 9.1e-06
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 5  SQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIKDATS 64
          + K ++  G+A G+A+EK++ L+DKA DAA +A  S Q+AG+ +   A G  + +KD T 
Sbjct: 4  TNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTG 63

Query: 65 MNK 68
          +NK
Sbjct: 64 LNK 66

[Close]

BLAST of Lsi09G004620 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-22
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MADNSQKMSYHVGEAKGQAQEKASN+MDKASD AQSAKES+QEAGQQ+KAKAQGAADA+K
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATSMNK 68
          DAT MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi09G004620 vs. NCBI nr
Match: gi|449469357|ref|XP_004152387.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 8.6e-22
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MADNS+KMSYH+GEAKGQAQEKASNLMDKA D AQSAKES+QEAGQQ+KAKAQGAADA+K
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATSMNK 68
          DAT MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi09G004620 vs. NCBI nr
Match: gi|449469355|ref|XP_004152386.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 9.5e-21
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MADNSQ MSY +GEAKGQAQEKASN+M+KASDAAQSAKESIQE GQQ+KAKAQGAADA+K
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATSMNK 68
          DAT MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi09G004620 vs. NCBI nr
Match: gi|1009127017|ref|XP_015880470.1| (PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba])

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-20
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MADNSQKMSYH GEAKG+AQEKA N+MDKAS+AAQSAKES+QEAGQQ+KAKAQGAADA+K
Sbjct: 1  MADNSQKMSYHAGEAKGRAQEKAGNMMDKASNAAQSAKESVQEAGQQMKAKAQGAADAVK 60

Query: 61 DATSM 66
          DAT M
Sbjct: 61 DATGM 65

[Close]

BLAST of Lsi09G004620 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1  MADNSQKMSYHVGEAKGQAQEKASNLMDKASDAAQSAKESIQEAGQQLKAKAQGAADAIK 60
          MAD+SQKMSY  GEAKGQA+EKASNLMDKAS+AAQSAKE+IQEAGQQ+ AKAQGAADAIK
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATSMNK 68
          DAT MNK
Sbjct: 61 DATGMNK 67

The following BLAST results are available for this feature:

BLAST of Lsi09G004620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G004620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRE1_CUCSA	6.0e-22	88.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
A0A0A0KPD4_CUCSA	6.6e-21	86.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
B9T3S3_RICCO	3.6e-19	80.60	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0447160 PE=4 SV=1	[more]
A0A0A0KXN2_CUCSA	2.3e-18	82.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1	[more]
A0A0A0KVV6_CUCSA	6.8e-18	80.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]

BLAST of Lsi09G004620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53820.1	8.0e-18	70.15	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	4.0e-17	65.67	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	8.3e-15	61.54	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G15970.1	9.1e-06	41.27	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / c...	[more]

BLAST of Lsi09G004620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073373\|ref\|XP_008437025.1\|	1.7e-22	91.04	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449469357\|ref\|XP_004152387.1\|	8.6e-22	88.06	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|449469355\|ref\|XP_004152386.1\|	9.5e-21	86.57	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|1009127017\|ref\|XP_015880470.1\|	4.7e-20	86.15	PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba]	[more]
gi\|659119050\|ref\|XP_008459448.1\|	1.0e-19	86.57	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G004620.1	Lsi09G004620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 27..47 scor
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 2..67 score: 1.1
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 2..67 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G004620	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G004620	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G004620	Melon (DHL92) v3.6.1	lsimedB006
Lsi09G004620	Silver-seed gourd	carlsiB493
Lsi09G004620	Cucumber (Chinese Long) v3	cuclsiB169
Lsi09G004620	Cucumber (Chinese Long) v3	cuclsiB345
Lsi09G004620	Watermelon (97103) v2	lsiwmbB007
Lsi09G004620	Wax gourd	lsiwgoB010
Lsi09G004620	Wax gourd	lsiwgoB031
Lsi09G004620	Wax gourd	lsiwgoB048
Lsi09G004620	Cucumber (Gy14) v1	cgylsiB201
Lsi09G004620	Cucurbita maxima (Rimu)	cmalsiB267
Lsi09G004620	Cucurbita moschata (Rifu)	cmolsiB255
Lsi09G004620	Cucurbita pepo (Zucchini)	cpelsiB131
Lsi09G004620	Cucurbita pepo (Zucchini)	cpelsiB587
Lsi09G004620	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G004620	Cucumber (Chinese Long) v2	culsiB322
Lsi09G004620	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G004620	Melon (DHL92) v3.5.1	lsimeB006
Lsi09G004620	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G004620	Watermelon (97103) v1	lsiwmB031