Lsi08G012880 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G012880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ornithine decarboxylase
Location	chr08 : 21241264 .. 21242547 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCGACCAGCTTCTCGCCATTCCGGCGAATCCAAAAAAGAAGCTCCAACTCCTCCAAAACGTACCAGGCCTAAACCCTAAAACCATCACTCCCATTTCCCAACATGGCCTCCTCCATTTCATCCAATCCACTGCTCTCAAAAGTCCCGACGAACCCTTCTACATCTTCGACTTGGCCGTTGTCGCCACCCTCTTCGACCACTGGTCTCAGTCCCTTCCCACCGTCCGCCCTTTCTACGCCGTCAAATGCAACCCTAACCCGGCCCTCCTCGCCGCCATGGCCGCCCTCGGCTCCAATTTCGACTGCGCCAGTCGGGCCGAAATCCAATCTGTTTTAGACCTTGGCGTCTCCCCTGATCGAATCGTCTTTGCCAATCCTTGCAAACCCGAATCCCACATCGAATTCGCCGCCGCCGTTGGAGTTAACCTCACTACGTTCGATTCTGTTGACGAGATCGAGAAGATTCGACGTTGCCACCCGAAATCCTCTTTGTTGATTCGGATCAAACCATCCGACGACGGCGGCGCTCGGTGCCCATTGGGAAACAAATACGGCGCACTACCGGAAGAAATTATCCCTCTTCTCGAAGCTGCTAAATCTGCTGAACTCCCCGTCGTTGGCGTGTCATTTCACATTGGAAGTGGGGCTACTGAAACAGGAGCTTATTCGGCCGCCATCTCCGCTGCGAGAGAGGTTTTTGAAACGGCTGTCAGACTTGGCCTGCCGCCAATGAATGTGCTCAACATTGGCGGCGGATTCACTGCCGGACCCCAATTCGAAGAAGCGGCTGTGACAGTAAATTCGGCCCTCGAAGAGTATTTTCCGGCGGAAATGAGTATCACCCTCATGGCTGAACCGGGGCGGTTTTTTGCGGAATCGGCGTTCACTCTGGCCGTCAGCATCATCGGAAAACGGGTGAGGGGAGATCTAAGGGAGTATTGGATCAACGACGGGATTTATGGGTCCATGAACTGTATACTATACGATCATGCGACGGTGACTTGCAGGCCGTTGGCACTGAAATCGAACCGGAAAAACCCCACGTGCGGCGGAGGGAAAATGTACTGCGCCACTGTGTTCGGCCCCACGTGCGACGCTTTGGACACTGTTTTGACCGGACAGCAGCTGCCGGAGTTGGAGGTGGGAGACTGGCTGGTTTTTCCGAAGATGGGGGCTTACACGGCGGCAGCAGGATCCAATTTCAATGGGTTTAACACAGCGGCGATTGAGACTTATGTTGGGTACTCCGAACAGGGAAACGGCGCCGTATTGGATTGA

mRNA sequence

ATGGCCGTCGACCAGCTTCTCGCCATTCCGGCGAATCCAAAAAAGAAGCTCCAACTCCTCCAAAACGTACCAGGCCTAAACCCTAAAACCATCACTCCCATTTCCCAACATGGCCTCCTCCATTTCATCCAATCCACTGCTCTCAAAAGTCCCGACGAACCCTTCTACATCTTCGACTTGGCCGTTGTCGCCACCCTCTTCGACCACTGGTCTCAGTCCCTTCCCACCGTCCGCCCTTTCTACGCCGTCAAATGCAACCCTAACCCGGCCCTCCTCGCCGCCATGGCCGCCCTCGGCTCCAATTTCGACTGCGCCAGTCGGGCCGAAATCCAATCTGTTTTAGACCTTGGCGTCTCCCCTGATCGAATCGTCTTTGCCAATCCTTGCAAACCCGAATCCCACATCGAATTCGCCGCCGCCGTTGGAGTTAACCTCACTACGTTCGATTCTGTTGACGAGATCGAGAAGATTCGACGTTGCCACCCGAAATCCTCTTTGTTGATTCGGATCAAACCATCCGACGACGGCGGCGCTCGGTGCCCATTGGGAAACAAATACGGCGCACTACCGGAAGAAATTATCCCTCTTCTCGAAGCTGCTAAATCTGCTGAACTCCCCGTCGTTGGCGTGTCATTTCACATTGGAAGTGGGGCTACTGAAACAGGAGCTTATTCGGCCGCCATCTCCGCTGCGAGAGAGGTTTTTGAAACGGCTGTCAGACTTGGCCTGCCGCCAATGAATGTGCTCAACATTGGCGGCGGATTCACTGCCGGACCCCAATTCGAAGAAGCGGCTGTGACAGTAAATTCGGCCCTCGAAGAGTATTTTCCGGCGGAAATGAGTATCACCCTCATGGCTGAACCGGGGCGGTTTTTTGCGGAATCGGCGTTCACTCTGGCCGTCAGCATCATCGGAAAACGGGTGAGGGGAGATCTAAGGGAGTATTGGATCAACGACGGGATTTATGGGTCCATGAACTGTATACTATACGATCATGCGACGGTGACTTGCAGGCCGTTGGCACTGAAATCGAACCGGAAAAACCCCACGTGCGGCGGAGGGAAAATGTACTGCGCCACTGTGTTCGGCCCCACGTGCGACGCTTTGGACACTGTTTTGACCGGACAGCAGCTGCCGGAGTTGGAGGTGGGAGACTGGCTGGTTTTTCCGAAGATGGGGGCTTACACGGCGGCAGCAGGATCCAATTTCAATGGGTTTAACACAGCGGCGATTGAGACTTATGTTGGGTACTCCGAACAGGGAAACGGCGCCGTATTGGATTGA

Coding sequence (CDS)

ATGGCCGTCGACCAGCTTCTCGCCATTCCGGCGAATCCAAAAAAGAAGCTCCAACTCCTCCAAAACGTACCAGGCCTAAACCCTAAAACCATCACTCCCATTTCCCAACATGGCCTCCTCCATTTCATCCAATCCACTGCTCTCAAAAGTCCCGACGAACCCTTCTACATCTTCGACTTGGCCGTTGTCGCCACCCTCTTCGACCACTGGTCTCAGTCCCTTCCCACCGTCCGCCCTTTCTACGCCGTCAAATGCAACCCTAACCCGGCCCTCCTCGCCGCCATGGCCGCCCTCGGCTCCAATTTCGACTGCGCCAGTCGGGCCGAAATCCAATCTGTTTTAGACCTTGGCGTCTCCCCTGATCGAATCGTCTTTGCCAATCCTTGCAAACCCGAATCCCACATCGAATTCGCCGCCGCCGTTGGAGTTAACCTCACTACGTTCGATTCTGTTGACGAGATCGAGAAGATTCGACGTTGCCACCCGAAATCCTCTTTGTTGATTCGGATCAAACCATCCGACGACGGCGGCGCTCGGTGCCCATTGGGAAACAAATACGGCGCACTACCGGAAGAAATTATCCCTCTTCTCGAAGCTGCTAAATCTGCTGAACTCCCCGTCGTTGGCGTGTCATTTCACATTGGAAGTGGGGCTACTGAAACAGGAGCTTATTCGGCCGCCATCTCCGCTGCGAGAGAGGTTTTTGAAACGGCTGTCAGACTTGGCCTGCCGCCAATGAATGTGCTCAACATTGGCGGCGGATTCACTGCCGGACCCCAATTCGAAGAAGCGGCTGTGACAGTAAATTCGGCCCTCGAAGAGTATTTTCCGGCGGAAATGAGTATCACCCTCATGGCTGAACCGGGGCGGTTTTTTGCGGAATCGGCGTTCACTCTGGCCGTCAGCATCATCGGAAAACGGGTGAGGGGAGATCTAAGGGAGTATTGGATCAACGACGGGATTTATGGGTCCATGAACTGTATACTATACGATCATGCGACGGTGACTTGCAGGCCGTTGGCACTGAAATCGAACCGGAAAAACCCCACGTGCGGCGGAGGGAAAATGTACTGCGCCACTGTGTTCGGCCCCACGTGCGACGCTTTGGACACTGTTTTGACCGGACAGCAGCTGCCGGAGTTGGAGGTGGGAGACTGGCTGGTTTTTCCGAAGATGGGGGCTTACACGGCGGCAGCAGGATCCAATTTCAATGGGTTTAACACAGCGGCGATTGAGACTTATGTTGGGTACTCCGAACAGGGAAACGGCGCCGTATTGGATTGA

Protein sequence

MAVDQLLAIPANPKKKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIGKRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYSEQGNGAVLD

Homology

[Close]

BLAST of Lsi08G012880 vs. Swiss-Prot
Match: DCOR_DATST (Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 1.6e-150
Identity = 255/393 (64.89%), Postives = 306/393 (77.86%), Query Frame = 1


Query: 29  KTITPISQHGLLHFIQSTA---LKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKC 88
           + + P+S+  L  F+ S     L+   +PFY+ DL  V +L D W+  LP +RPFYAVKC
Sbjct: 36  RKVVPLSRDALQDFMVSIITQKLQDEKQPFYVLDLGEVVSLMDQWNAGLPNIRPFYAVKC 95

Query: 89  NPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAVGVNL 148
           NP P+ L+ ++A+GSNFDCASRAEI+ VL LG+SPDRIVFANPCKPES I FAA VGVNL
Sbjct: 96  NPEPSFLSMLSAMGSNFDCASRAEIEYVLSLGISPDRIVFANPCKPESDIIFAAKVGVNL 155

Query: 149 TTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAKSAEL 208
           TTFDS DE+ KIR+ HPK  LL+RIKP DDG ARCP+G KYGALPEE+ PLL  A++A L
Sbjct: 156 TTFDSEDEVYKIRKHHPKCELLLRIKPMDDGNARCPMGPKYGALPEEVEPLLRTAQAARL 215

Query: 209 PVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAA 268
            V GVSFHIGSG  ++ AY  AI+AA+ VFETA R G+  M VL+IGGGFT+G QF  A+
Sbjct: 216 TVSGVSFHIGSGDADSKAYLGAIAAAKGVFETAARFGMSKMTVLDIGGGFTSGHQFTTAS 275

Query: 269 VTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIGKRVRGDLREYWINDGIYGSM 328
             V SALE++F  E  +T++AEPGRFFAE+AFTLA +IIGKRVRG+LREYWINDG+YGSM
Sbjct: 276 AAVRSALEQHFHDEQELTIIAEPGRFFAETAFTLATTIIGKRVRGELREYWINDGLYGSM 335

Query: 329 NCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVGD 388
           NC+LYDHATV   PLA  SNR N  CGG K + +TVFGPTCDALDTVL   QLPEL+V D
Sbjct: 336 NCVLYDHATVNATPLACMSNRSNLNCGGSKTFPSTVFGPTCDALDTVLRDYQLPELQVND 395

Query: 389 WLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           WL+FP MGAYT AAGSNFNGFNT+AI T++ Y+
Sbjct: 396 WLIFPNMGAYTKAAGSNFNGFNTSAIVTHLAYA 428

[Close]

BLAST of Lsi08G012880 vs. Swiss-Prot
Match: DCOR_SOLLC (Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2)

HSP 1 Score: 526.2 bits (1354), Expect = 3.4e-148
Identity = 251/393 (63.87%), Postives = 306/393 (77.86%), Query Frame = 1


Query: 29  KTITPISQHGLLHFIQSTA---LKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKC 88
           + + P+S+  L  F+ S     L+   +PFY+ DL  V +L + W+ +LP +RPFYAVKC
Sbjct: 36  RKVVPLSKDALQDFMVSIITQKLQDDKQPFYVLDLGEVVSLMEQWNSALPNIRPFYAVKC 95

Query: 89  NPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAVGVNL 148
           NP P+ L+ ++A+GSNFDCASRAEI+ VL  G+SPDRIVFANPCKPES I FA  +GVNL
Sbjct: 96  NPEPSFLSMLSAMGSNFDCASRAEIEYVLSHGISPDRIVFANPCKPESDIIFAEKIGVNL 155

Query: 149 TTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAKSAEL 208
           TT+DS DE+ KIR+ HPK  LL+RIKP  DG ARCP+G KYGALPEEI PLL  A++A L
Sbjct: 156 TTYDSEDEVYKIRKHHPKCELLLRIKPMTDGNARCPMGPKYGALPEEIEPLLRTAQAARL 215

Query: 209 PVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAA 268
            V GVSFHIGSG  ++ AY  AI+AA++VFETA +LG+P M VL+IGGGFT+G QF  AA
Sbjct: 216 TVSGVSFHIGSGDADSNAYLGAIAAAKQVFETAAQLGMPKMTVLDIGGGFTSGHQFTTAA 275

Query: 269 VTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIGKRVRGDLREYWINDGIYGSM 328
             V SALE +F     +T++AEPGRFFAE+AFTLA +IIGKRVRG+L+EYWINDG+YGSM
Sbjct: 276 PAVKSALETHFHDFPELTIIAEPGRFFAETAFTLATTIIGKRVRGELKEYWINDGLYGSM 335

Query: 329 NCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVGD 388
           NC+LYDHATVT  PLA  SNR N  CGG K + +TVFGPTCDALDTVL   QLPEL+V D
Sbjct: 336 NCVLYDHATVTATPLACMSNRNNLNCGGSKTFPSTVFGPTCDALDTVLRDYQLPELQVND 395

Query: 389 WLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           WL+FP MGAYT AAGSNFNGFNT+AI T++ Y+
Sbjct: 396 WLIFPNMGAYTKAAGSNFNGFNTSAIVTHLAYA 428

[Close]

BLAST of Lsi08G012880 vs. Swiss-Prot
Match: DCOR_CAPAN (Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 1.3e-147
Identity = 250/397 (62.97%), Postives = 308/397 (77.58%), Query Frame = 1


Query: 25  GLNPKTITPISQHGLLHFIQSTA---LKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFY 84
           G   + + P+S+  L  F+ S     L+   +PFY+ DL  V +L D W+ +LP VRPFY
Sbjct: 36  GDTTRKVVPLSKDALQDFMVSIITQKLQGEKKPFYVLDLGEVVSLMDQWNVALPNVRPFY 95

Query: 85  AVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAV 144
           AVKCNP P+ L+ +AA+GSNF CASRAEI+ VL LG+SP+RIVFANPCKPES I FA  V
Sbjct: 96  AVKCNPEPSFLSMLAAMGSNFVCASRAEIEYVLSLGISPERIVFANPCKPESDIIFAEKV 155

Query: 145 GVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAK 204
           GVNLTT+DS DE+ KI++ HPK  LL+RIKP +DG ARCP+G KYGALPEEI PLL  A+
Sbjct: 156 GVNLTTYDSEDEVYKIKKHHPKCELLLRIKPMNDGNARCPMGPKYGALPEEIEPLLRIAQ 215

Query: 205 SAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPPMNVLNIGGGFTAGPQF 264
           ++ L V GVSFHIGSG  ++ AY  AI+AA++VFETA + G+  MNVL+IGGGFT+G QF
Sbjct: 216 ASRLTVSGVSFHIGSGDADSNAYLGAIAAAKQVFETAAKFGMSKMNVLDIGGGFTSGHQF 275

Query: 265 EEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIGKRVRGDLREYWINDGI 324
             AA  V SAL+++F  E  +T++AEPGRFFAE+AFTLA +IIGKRVRGDLREYWINDG+
Sbjct: 276 TTAATAVKSALQQHFSNEPELTIIAEPGRFFAETAFTLATTIIGKRVRGDLREYWINDGL 335

Query: 325 YGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTVLTGQQLPEL 384
           YGSMNC+LYDHATVT  PLA  SNR N  C G KM+ +T+FGPTCDALDTVL    +PEL
Sbjct: 336 YGSMNCVLYDHATVTATPLACMSNRVNLNCSGSKMFPSTIFGPTCDALDTVLRDYHVPEL 395

Query: 385 EVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           +V DW++FP MGAYT AAGSNFNGFNT+AI T++ Y+
Sbjct: 396 QVNDWVIFPNMGAYTKAAGSNFNGFNTSAIVTHLAYA 432

[Close]

BLAST of Lsi08G012880 vs. Swiss-Prot
Match: DCOR_TRYBB (Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 342.0 bits (876), Expect = 9.1e-93
Identity = 173/377 (45.89%), Postives = 246/377 (65.25%), Query Frame = 1


Query: 53  EPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQS 112
           +PF++ DL  +    + W + LP V PFYAVKCN +  +L  +AALG+ FDCAS  EIQ 
Sbjct: 36  DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 95

Query: 113 VLDLGVSPDRIVFANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKP 172
           V  +GV P++I++ANPCK  SHI +A   GV++ TFD VDE+EK+ + HPK+ +++RI  
Sbjct: 96  VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIS- 155

Query: 173 SDDGGARCPLGNKYGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAR 232
           +DD  ARC L  K+GA  E+   +LE AK   + V GVSFH+GSG+T+   ++ AIS +R
Sbjct: 156 TDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 215

Query: 233 EVFETAVRLGLPPMNVLNIGGGF----TAGPQFEEAAVTVNSALEEYFPAEMSITLMAEP 292
            VF+    LG   M++L+IGGGF     A  +FEE A  +N+ALE++FP ++ +T++AEP
Sbjct: 216 FVFDMGTELGF-NMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEP 275

Query: 293 GRFFAESAFTLAVSIIGKRVRGDLRE--------------YWINDGIYGSMNCILYDHAT 352
           GR++  SAFTLAV++I K+V   ++               Y++NDG+YGS NCILYDHA 
Sbjct: 276 GRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAV 335

Query: 353 VTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVGDWLVFPKMGA 412
           V  RPL  +    N      K+Y ++V+GPTCD LD ++    LPE++VG+WL+F  MGA
Sbjct: 336 V--RPLPQREPIPNE-----KLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGA 395

[Close]

BLAST of Lsi08G012880 vs. Swiss-Prot
Match: DCOR_CHICK (Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.1e-89
Identity = 175/387 (45.22%), Postives = 238/387 (61.50%), Query Frame = 1


Query: 43  IQSTALKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNF 102
           I   +     + FY+ DL  +      W ++LP V PFYAVKCN + A++  +A LG+ F
Sbjct: 18  INEVSSSDDKDAFYVADLGDIVKKHMRWHKALPRVTPFYAVKCNDSEAVVKTLAVLGAGF 77

Query: 103 DCASRAEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHP 162
           DCAS+ EIQ V  +GV P+RI++ANPCK  S I+ AA  GV + TFDS  E+ KI R HP
Sbjct: 78  DCASKTEIQLVQSIGVPPERIIYANPCKQLSQIKHAANSGVRMMTFDSEVELMKIARPHP 137

Query: 163 KSSLLIRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETG 222
           K+ LL+RI  +DD  A C L  K+GA  +    LLE AK  +L +VGVSFH+GSG T+  
Sbjct: 138 KAKLLLRI-TTDDSKAVCRLSVKFGATLKTSRLLLERAKELDLAIVGVSFHVGSGCTDPE 197

Query: 223 AYSAAISAAREVFETAVRLGLPPMNVLNIGGGFTAGP----QFEEAAVTVNSALEEYFPA 282
            +  AIS AR VF+    LG   M +L+IGGGF        +FEE    +N AL++YFP 
Sbjct: 198 TFVQAISDARCVFDMGAELGF-NMYLLDIGGGFPGSEDVKLKFEEITSVINPALDKYFPL 257

Query: 283 EMSITLMAEPGRFFAESAFTLAVSIIGKRV----------RGDLRE----YWINDGIYGS 342
           +  +T++AEPGR++  SAFTLAV+II K++            D+ +    Y++NDG+YGS
Sbjct: 258 DSEVTIIAEPGRYYVASAFTLAVNIIAKKIVSKEQTGSDDEDDVNDKTLMYYVNDGVYGS 317

Query: 343 MNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVG 402
            NCILYDHA V  +P+  K  + +  C     Y  +++GPTCD LD ++    +PEL+VG
Sbjct: 318 FNCILYDHAHV--KPVLQKRPKPDDGC-----YSCSIWGPTCDGLDRIVERCNMPELQVG 377

Query: 403 DWLVFPKMGAYTAAAGSNFNGFNTAAI 412
           DW++F  MGAYT AA S FNGF    I
Sbjct: 378 DWILFENMGAYTVAAASTFNGFQRPTI 395

[Close]

BLAST of Lsi08G012880 vs. TrEMBL
Match: A0A0A0LQI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348140 PE=3 SV=1)

HSP 1 Score: 630.2 bits (1624), Expect = 1.9e-177
Identity = 312/372 (83.87%), Postives = 337/372 (90.59%), Query Frame = 1


Query: 48  LKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASR 107
           LK+ D+PFY FDLAVVATLFD WS SLPTV PFYAVKCNPNP LLAAMAALGSNFDCASR
Sbjct: 12  LKTSDKPFYTFDLAVVATLFDLWSHSLPTVHPFYAVKCNPNPDLLAAMAALGSNFDCASR 71

Query: 108 AEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLL 167
           AEIQSVL LGVSPDRIVFANPCKPESHIE+A++VGVNLTTFDSVDEI+KIRRCHPK +LL
Sbjct: 72  AEIQSVLVLGVSPDRIVFANPCKPESHIEYASSVGVNLTTFDSVDEIQKIRRCHPKFALL 131

Query: 168 IRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAA 227
           IRIKPSDDG ARCPL NKYG LPEEIIPLL+AAKSAEL VVGVSFHIGSGATET AYSAA
Sbjct: 132 IRIKPSDDGSARCPLENKYGTLPEEIIPLLQAAKSAELSVVGVSFHIGSGATETCAYSAA 191

Query: 228 ISAAREVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAE 287
           I+AAR VFETAVRLGLPPMNVLNIGGGFTAGPQFEEAA  V SA++EYFP E++  L+AE
Sbjct: 192 IAAARGVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAAGAVKSAIKEYFPEELNTILIAE 251

Query: 288 PGRFFAESAFTLAVSIIGKRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRK 347
           PGRFFAESAFTLAV IIGKRVRGDLREYWINDGIYGSM CILYDHAT++C+ LA+KSNR+
Sbjct: 252 PGRFFAESAFTLAVHIIGKRVRGDLREYWINDGIYGSMKCILYDHATLSCKALAVKSNRE 311

Query: 348 NPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFN 407
           NPTCGGG+M+ + VFGPTCDALDTVLTG+QLP+LE         MGAYTAAAGSNFNGFN
Sbjct: 312 NPTCGGGRMHRSIVFGPTCDALDTVLTGKQLPDLE---------MGAYTAAAGSNFNGFN 371

Query: 408 TAAIETYVGYSE 420
           TAAIETY+ YSE
Sbjct: 372 TAAIETYIVYSE 374

[Close]

BLAST of Lsi08G012880 vs. TrEMBL
Match: B9H5C8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26760g PE=3 SV=2)

HSP 1 Score: 580.1 bits (1494), Expect = 2.2e-162
Identity = 283/413 (68.52%), Postives = 334/413 (80.87%), Query Frame = 1


Query: 8   AIPANPKKKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPD--EPFYIFDLAVVAT 67
           +IP NP   + L    PG+  K +T IS++GL  F+ S   K  +  EPFY+ DL  V  
Sbjct: 3   SIPKNPHAGVLL--GAPGVKGKRVTTISKNGLTEFMLSIISKKQETKEPFYVLDLGEVTA 62

Query: 68  LFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVF 127
           L D W  +LP V PFYAVKCNP+PALL ++AALGSNFDCASRAEI+SVL LGVSP+RIV+
Sbjct: 63  LMDKWLMTLPMVHPFYAVKCNPDPALLGSLAALGSNFDCASRAEIESVLSLGVSPNRIVY 122

Query: 128 ANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNK 187
           ANPCK ESHI++AA+VGVNLTTFDS +E++KIR+ H K +LLIRIK  DD GARCPLG K
Sbjct: 123 ANPCKQESHIKYAASVGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPLGPK 182

Query: 188 YGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPP 247
           YGALPEE+ PLL+AA++A+L VVGVSFHIGSGAT + AY  AI++A+ VFE AVRLG+P 
Sbjct: 183 YGALPEEVTPLLQAAQTAQLNVVGVSFHIGSGATRSRAYEGAIASAKSVFEAAVRLGMPG 242

Query: 248 MNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIG 307
           M +LNIGGGFTAG QF+EAA T+ SAL+ YFP E  +T+++EPGRFFAESAFTLA +IIG
Sbjct: 243 MKILNIGGGFTAGSQFDEAATTIKSALQAYFPNEPGLTVISEPGRFFAESAFTLATNIIG 302

Query: 308 KRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPT 367
           KRVRGDLREYWINDGIYGSMNCILYDHAT+TC PLA  SN  N TC G + Y +TVFGPT
Sbjct: 303 KRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNHANLTCKGLRAYSSTVFGPT 362

Query: 368 CDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           CDALDTVLTG QLPEL++ DWLVFP MGAYTAAAGS+FNGFNTAAI T++  S
Sbjct: 363 CDALDTVLTGHQLPELQINDWLVFPHMGAYTAAAGSSFNGFNTAAILTHLASS 413

[Close]

BLAST of Lsi08G012880 vs. TrEMBL
Match: A0A061FL05_THECC (Pyridoxal-dependent decarboxylase family protein, putative OS=Theobroma cacao GN=TCM_034310 PE=3 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 1.9e-161
Identity = 282/406 (69.46%), Postives = 327/406 (80.54%), Query Frame = 1


Query: 15  KKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPD--EPFYIFDLAVVATLFDHWSQ 74
           + LQ +   PG+  K +  +S+ GL  FIQS      +  EPFY+ DL VV  LFD W++
Sbjct: 6   RTLQAIVGAPGVRGKKVAALSKDGLTAFIQSIVSTKQEMKEPFYVLDLGVVMALFDKWAR 65

Query: 75  SLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVFANPCKPE 134
           +LP  +PFYAVKCNPNPALL A+A LGS FDCAS+AEI+SVL LGVSP RI+FANPCK E
Sbjct: 66  NLPMAQPFYAVKCNPNPALLGALATLGSGFDCASKAEIESVLSLGVSPGRIIFANPCKAE 125

Query: 135 SHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNKYGALPEE 194
           SHI++AA VGVNLTTFDS +E+EKI++ HPK +LLIR+K  DDGGARCPLG KYGALPEE
Sbjct: 126 SHIKYAATVGVNLTTFDSKEELEKIKKWHPKCALLIRVKAPDDGGARCPLGPKYGALPEE 185

Query: 195 IIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPPMNVLNIG 254
           + PLL+AA++A L V GVSFHIGSGA +  AY  AI+AA+ VFETA RLG+P M+VLNIG
Sbjct: 186 VTPLLQAAQTARLTVTGVSFHIGSGAMQFRAYREAIAAAKTVFETAARLGMPKMHVLNIG 245

Query: 255 GGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIGKRVRGDL 314
           GGFTAGPQF EAA TV +AL+ YFP E S+T++AEPGRFFAESAFTLA +IIGKRVRGDL
Sbjct: 246 GGFTAGPQFAEAASTVKAALQAYFPNEPSLTVIAEPGRFFAESAFTLATNIIGKRVRGDL 305

Query: 315 REYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTV 374
           REYWINDGIYGSMNCILYDHA VTC PLA  S   +P C G + Y +TVFGPTCDALDTV
Sbjct: 306 REYWINDGIYGSMNCILYDHAVVTCMPLARAS---SPRCKGARTYDSTVFGPTCDALDTV 365

Query: 375 LTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           L G  LPEL+V DWLVFP MGAYTAAAGSNFNGFNT+AI TY+ YS
Sbjct: 366 LKGYPLPELQVNDWLVFPNMGAYTAAAGSNFNGFNTSAILTYLAYS 408

[Close]

BLAST of Lsi08G012880 vs. TrEMBL
Match: G4XUJ8_ERYCB (Ornithine decarboxylase OS=Erythroxylum coca GN=ODC PE=2 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 2.4e-161
Identity = 270/406 (66.50%), Postives = 334/406 (82.27%), Query Frame = 1


Query: 15  KKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPD--EPFYIFDLAVVATLFDHWSQ 74
           + LQ +   PG+  + +  + + GL  F+QS  +K  +  EPFY+ DL  V+ L D WS+
Sbjct: 6   RNLQAVLGAPGVRGRRVAALPKDGLTDFMQSIIMKRNESKEPFYVLDLGAVSGLMDKWSR 65

Query: 75  SLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVFANPCKPE 134
           +LP VRPFYAVKCNP PALL ++AA+G+NFDCASRAEI++VL L VSPDRIV+ANPCK E
Sbjct: 66  TLPMVRPFYAVKCNPEPALLGSLAAMGANFDCASRAEIEAVLSLRVSPDRIVYANPCKQE 125

Query: 135 SHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNKYGALPEE 194
           SHI++AA+VGVNLTTFDS DE+EK+R+ HPK +LL+R+K  +DGGARCPLG KYGALPEE
Sbjct: 126 SHIKYAASVGVNLTTFDSKDELEKMRKWHPKCALLLRVKAPEDGGARCPLGPKYGALPEE 185

Query: 195 IIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPPMNVLNIG 254
           +IPLL+AA++A L VVG SFHIGSGAT   +Y  AI+ A++VFETAV++G+P M +LNIG
Sbjct: 186 VIPLLQAAQAARLSVVGASFHIGSGATHFSSYRGAIAEAKKVFETAVKMGMPRMTMLNIG 245

Query: 255 GGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIGKRVRGDL 314
           GGFTAG QF+EAA  + SAL+ YFP E  +T+++EPGRFFAESAFTLA ++IG+RVRG+L
Sbjct: 246 GGFTAGSQFDEAATAIKSALQTYFPNEPGLTIISEPGRFFAESAFTLATNVIGRRVRGEL 305

Query: 315 REYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTV 374
           REYWINDGIYGSMNCILYDHATVTC+PLA  S+R NP C G ++Y +TVFGPTCDALDTV
Sbjct: 306 REYWINDGIYGSMNCILYDHATVTCKPLACTSSRANPMCKGARVYNSTVFGPTCDALDTV 365

Query: 375 LTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           +TG  LP+L+V DWLVFP MGAYTAAAGS+FNGF TAAI TY+ YS
Sbjct: 366 MTGHLLPDLQVSDWLVFPNMGAYTAAAGSSFNGFKTAAILTYLAYS 411

[Close]

BLAST of Lsi08G012880 vs. TrEMBL
Match: A2TBH8_THECC (Putative ornithine decarboxylase OS=Theobroma cacao PE=2 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 2.1e-160
Identity = 281/406 (69.21%), Postives = 326/406 (80.30%), Query Frame = 1


Query: 15  KKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPD--EPFYIFDLAVVATLFDHWSQ 74
           + LQ +   PG+  K +  +S+ GL  FIQS      +  EPFY+ DL VV  LFD W++
Sbjct: 6   RTLQAIVGAPGVRGKKVAALSKDGLTAFIQSIVSTKQEMKEPFYVLDLGVVMALFDKWAR 65

Query: 75  SLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVFANPCKPE 134
           +LP  +PFYAVKCNPNPALL A+A LGS FDCAS+AEI+SVL LGVSP RI+FANPCK E
Sbjct: 66  NLPMAQPFYAVKCNPNPALLGALATLGSGFDCASKAEIESVLSLGVSPGRIIFANPCKAE 125

Query: 135 SHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNKYGALPEE 194
           SHI++AA VGVNLTTFDS +E+EKI++ HPK +LLIR+K  DDGGARCPLG KYGALPEE
Sbjct: 126 SHIKYAATVGVNLTTFDSKEELEKIKKWHPKCALLIRVKAPDDGGARCPLGPKYGALPEE 185

Query: 195 IIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPPMNVLNIG 254
           + PLL+AA++A L V GVSFHIGSGA +  AY  AI+AA+ VFETA RLG+P M+VLNIG
Sbjct: 186 VTPLLQAAQTARLTVTGVSFHIGSGAMQFRAYREAIAAAKTVFETAARLGMPKMHVLNIG 245

Query: 255 GGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIGKRVRGDL 314
           GGFTAGPQF EAA TV +AL+ YFP E S+T++AEPGRFFAESAFTLA +IIGKRVRGDL
Sbjct: 246 GGFTAGPQFAEAASTVKAALQAYFPNEPSLTVIAEPGRFFAESAFTLATNIIGKRVRGDL 305

Query: 315 REYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTV 374
           REYWINDGIYGSMNCILYDHA VTC PLA  S   +P C G + Y +TVFGPTCDALDTV
Sbjct: 306 REYWINDGIYGSMNCILYDHAVVTCMPLARAS---SPRCKGARTYDSTVFGPTCDALDTV 365

Query: 375 LTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           L    LPEL+V DWLVFP MGAYTAAAGSNFNGFNT+AI TY+ YS
Sbjct: 366 LKVYPLPELQVNDWLVFPNMGAYTAAAGSNFNGFNTSAILTYLAYS 408

[Close]

BLAST of Lsi08G012880 vs. NCBI nr
Match: gi|659089068|ref|XP_008445311.1| (PREDICTED: ornithine decarboxylase-like [Cucumis melo])

HSP 1 Score: 767.7 bits (1981), Expect = 1.1e-218
Identity = 375/427 (87.82%), Postives = 399/427 (93.44%), Query Frame = 1


Query: 1   MAVDQLLAIPANPKKKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPDEPFYIFDL 60
           MAVDQLL +PAN KKKL LLQN PGLNPKTITPISQHGLLHF+QS  LK+ D+PFY FDL
Sbjct: 1   MAVDQLLPVPANSKKKLHLLQNAPGLNPKTITPISQHGLLHFLQSIVLKTSDKPFYTFDL 60

Query: 61  AVVATLFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSP 120
           AVVATLFD WS SLPTVRPFYAVKCNPNP  LAAMAALGSNFDCASRAEIQSVL LGVSP
Sbjct: 61  AVVATLFDLWSHSLPTVRPFYAVKCNPNPDFLAAMAALGSNFDCASRAEIQSVLALGVSP 120

Query: 121 DRIVFANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARC 180
           DRIVFANPCKPESHIEFAA VGVNLTTFDSVDEI+KIRRCHPKS+LLIRIKPSDDG ARC
Sbjct: 121 DRIVFANPCKPESHIEFAATVGVNLTTFDSVDEIQKIRRCHPKSALLIRIKPSDDGSARC 180

Query: 181 PLGNKYGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVR 240
           PLGNKYGALPEEIIPLL+AAKSAEL VVGVSFHIGSGATET AYSAAI+AAR VFETAVR
Sbjct: 181 PLGNKYGALPEEIIPLLQAAKSAELAVVGVSFHIGSGATETRAYSAAIAAARGVFETAVR 240

Query: 241 LGLPPMNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLA 300
           LGLPPMNVLNIGGGFTAGPQFEEAAV V SA++EYFP +++I LMAEPGRFFAESAFTLA
Sbjct: 241 LGLPPMNVLNIGGGFTAGPQFEEAAVAVKSAIKEYFPEDLNIALMAEPGRFFAESAFTLA 300

Query: 301 VSIIGKRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCAT 360
           V IIGKRVRGDLREYWINDGIYGSMNCILYDHAT++CR LA+KSN +NPTCGGG+M+ +T
Sbjct: 301 VHIIGKRVRGDLREYWINDGIYGSMNCILYDHATLSCRALAVKSNMENPTCGGGRMHRST 360

Query: 361 VFGPTCDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYSEQ 420
           VFGPTCDALDTVLTG+QLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTA+IETY+ YSEQ
Sbjct: 361 VFGPTCDALDTVLTGKQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTASIETYIVYSEQ 420

Query: 421 GNGAVLD 428
           GNGAV +
Sbjct: 421 GNGAVFE 427

[Close]

BLAST of Lsi08G012880 vs. NCBI nr
Match: gi|449450648|ref|XP_004143074.1| (PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase-like [Cucumis sativus])

HSP 1 Score: 654.4 bits (1687), Expect = 1.3e-184
Identity = 320/372 (86.02%), Postives = 345/372 (92.74%), Query Frame = 1


Query: 48  LKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASR 107
           LK+ D+PFY FDLAVVATLFD WS SLPTV PFYAVKCNPNP LLAAMAALGSNFDCASR
Sbjct: 12  LKTSDKPFYTFDLAVVATLFDLWSHSLPTVHPFYAVKCNPNPDLLAAMAALGSNFDCASR 71

Query: 108 AEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLL 167
           AEIQSVL LGVSPDRIVFANPCKPESHIE+A++VGVNLTTFDSVDEI+KIRRCHPK +LL
Sbjct: 72  AEIQSVLVLGVSPDRIVFANPCKPESHIEYASSVGVNLTTFDSVDEIQKIRRCHPKFALL 131

Query: 168 IRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAA 227
           IRIKPSDDG ARCPL NKYG LPEEIIPLL+AAKSAEL VVGVSFHIGSGATET AYSAA
Sbjct: 132 IRIKPSDDGSARCPLENKYGTLPEEIIPLLQAAKSAELSVVGVSFHIGSGATETCAYSAA 191

Query: 228 ISAAREVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAE 287
           I+AAR VFETAVRLGLPPMNVLNIGGGFTAGPQFEEAA  V SA++EYFP E++  L+AE
Sbjct: 192 IAAARGVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAAGAVKSAIKEYFPEELNTILIAE 251

Query: 288 PGRFFAESAFTLAVSIIGKRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRK 347
           PGRFFAESAFTLAV IIGKRVRGDLREYWINDGIYGSM CILYDHAT++C+ LA+KSNR+
Sbjct: 252 PGRFFAESAFTLAVHIIGKRVRGDLREYWINDGIYGSMKCILYDHATLSCKALAVKSNRE 311

Query: 348 NPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFN 407
           NPTCGGG+M+ + VFGPTCDALDTVLTG+QLP+LEVGD LVFPKMGAYTAAAGSNFNGFN
Sbjct: 312 NPTCGGGRMHRSIVFGPTCDALDTVLTGKQLPDLEVGDXLVFPKMGAYTAAAGSNFNGFN 371

Query: 408 TAAIETYVGYSE 420
           TAAIETY+ YSE
Sbjct: 372 TAAIETYIVYSE 383

[Close]

BLAST of Lsi08G012880 vs. NCBI nr
Match: gi|700207157|gb|KGN62276.1| (hypothetical protein Csa_2G348140 [Cucumis sativus])

HSP 1 Score: 630.2 bits (1624), Expect = 2.7e-177
Identity = 312/372 (83.87%), Postives = 337/372 (90.59%), Query Frame = 1


Query: 48  LKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASR 107
           LK+ D+PFY FDLAVVATLFD WS SLPTV PFYAVKCNPNP LLAAMAALGSNFDCASR
Sbjct: 12  LKTSDKPFYTFDLAVVATLFDLWSHSLPTVHPFYAVKCNPNPDLLAAMAALGSNFDCASR 71

Query: 108 AEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLL 167
           AEIQSVL LGVSPDRIVFANPCKPESHIE+A++VGVNLTTFDSVDEI+KIRRCHPK +LL
Sbjct: 72  AEIQSVLVLGVSPDRIVFANPCKPESHIEYASSVGVNLTTFDSVDEIQKIRRCHPKFALL 131

Query: 168 IRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAA 227
           IRIKPSDDG ARCPL NKYG LPEEIIPLL+AAKSAEL VVGVSFHIGSGATET AYSAA
Sbjct: 132 IRIKPSDDGSARCPLENKYGTLPEEIIPLLQAAKSAELSVVGVSFHIGSGATETCAYSAA 191

Query: 228 ISAAREVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAE 287
           I+AAR VFETAVRLGLPPMNVLNIGGGFTAGPQFEEAA  V SA++EYFP E++  L+AE
Sbjct: 192 IAAARGVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAAGAVKSAIKEYFPEELNTILIAE 251

Query: 288 PGRFFAESAFTLAVSIIGKRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRK 347
           PGRFFAESAFTLAV IIGKRVRGDLREYWINDGIYGSM CILYDHAT++C+ LA+KSNR+
Sbjct: 252 PGRFFAESAFTLAVHIIGKRVRGDLREYWINDGIYGSMKCILYDHATLSCKALAVKSNRE 311

Query: 348 NPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFN 407
           NPTCGGG+M+ + VFGPTCDALDTVLTG+QLP+LE         MGAYTAAAGSNFNGFN
Sbjct: 312 NPTCGGGRMHRSIVFGPTCDALDTVLTGKQLPDLE---------MGAYTAAAGSNFNGFN 371

Query: 408 TAAIETYVGYSE 420
           TAAIETY+ YSE
Sbjct: 372 TAAIETYIVYSE 374

[Close]

BLAST of Lsi08G012880 vs. NCBI nr
Match: gi|743918189|ref|XP_011003098.1| (PREDICTED: ornithine decarboxylase-like [Populus euphratica])

HSP 1 Score: 583.9 bits (1504), Expect = 2.2e-163
Identity = 285/413 (69.01%), Postives = 334/413 (80.87%), Query Frame = 1


Query: 8   AIPANPKKKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPD--EPFYIFDLAVVAT 67
           +IP NP   + L    PG+  K +T ISQ+GL  F+ S   K  +  EPFY+ DL  V  
Sbjct: 3   SIPKNPHAGVVL--GAPGVKGKMVTTISQNGLTEFMLSIISKKQETKEPFYVLDLGEVTA 62

Query: 68  LFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVF 127
           L D W+ +LP VRPFYAVKCNP+PALL ++AALGSNFDCASRAEI+SVL LGVSP+RIV+
Sbjct: 63  LMDKWTMALPMVRPFYAVKCNPDPALLGSLAALGSNFDCASRAEIESVLSLGVSPNRIVY 122

Query: 128 ANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNK 187
           ANPCK ESHI++AA+VGVNLTTFDS +E++KIR+ H K +LLIRIK  DD GARCPLG K
Sbjct: 123 ANPCKQESHIKYAASVGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPLGPK 182

Query: 188 YGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPP 247
           YGALPEE+ PLL+AA++A L VVGVSFHIGSGAT   AY  AI++A+ VFE AVRLG+P 
Sbjct: 183 YGALPEEVTPLLQAAQTARLNVVGVSFHIGSGATHARAYKGAIASAKSVFEAAVRLGMPR 242

Query: 248 MNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIG 307
           M +LNIGGGFTAG QF+EAA  + SAL+ YFP E  +T+++EPGRFFAESAFTLA +IIG
Sbjct: 243 MKILNIGGGFTAGSQFDEAATAIKSALQTYFPNEPGLTVISEPGRFFAESAFTLATNIIG 302

Query: 308 KRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPT 367
           KRVRGDLREYWINDGIYGSMNCILYDHAT+TC PLA  SNR N TC G + Y +TVFGPT
Sbjct: 303 KRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNRANLTCKGLRAYSSTVFGPT 362

Query: 368 CDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           CDALDTVLTG QLPEL++ DWLVFP MGAYTAAAGS+FNGFNTAAI T++  S
Sbjct: 363 CDALDTVLTGHQLPELQINDWLVFPNMGAYTAAAGSSFNGFNTAAILTHLASS 413

[Close]

BLAST of Lsi08G012880 vs. NCBI nr
Match: gi|566173405|ref|XP_002307756.2| (hypothetical protein POPTR_0005s26760g [Populus trichocarpa])

HSP 1 Score: 580.1 bits (1494), Expect = 3.2e-162
Identity = 283/413 (68.52%), Postives = 334/413 (80.87%), Query Frame = 1


Query: 8   AIPANPKKKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPD--EPFYIFDLAVVAT 67
           +IP NP   + L    PG+  K +T IS++GL  F+ S   K  +  EPFY+ DL  V  
Sbjct: 3   SIPKNPHAGVLL--GAPGVKGKRVTTISKNGLTEFMLSIISKKQETKEPFYVLDLGEVTA 62

Query: 68  LFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVF 127
           L D W  +LP V PFYAVKCNP+PALL ++AALGSNFDCASRAEI+SVL LGVSP+RIV+
Sbjct: 63  LMDKWLMTLPMVHPFYAVKCNPDPALLGSLAALGSNFDCASRAEIESVLSLGVSPNRIVY 122

Query: 128 ANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNK 187
           ANPCK ESHI++AA+VGVNLTTFDS +E++KIR+ H K +LLIRIK  DD GARCPLG K
Sbjct: 123 ANPCKQESHIKYAASVGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPLGPK 182

Query: 188 YGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPP 247
           YGALPEE+ PLL+AA++A+L VVGVSFHIGSGAT + AY  AI++A+ VFE AVRLG+P 
Sbjct: 183 YGALPEEVTPLLQAAQTAQLNVVGVSFHIGSGATRSRAYEGAIASAKSVFEAAVRLGMPG 242

Query: 248 MNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIG 307
           M +LNIGGGFTAG QF+EAA T+ SAL+ YFP E  +T+++EPGRFFAESAFTLA +IIG
Sbjct: 243 MKILNIGGGFTAGSQFDEAATTIKSALQAYFPNEPGLTVISEPGRFFAESAFTLATNIIG 302

Query: 308 KRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPT 367
           KRVRGDLREYWINDGIYGSMNCILYDHAT+TC PLA  SN  N TC G + Y +TVFGPT
Sbjct: 303 KRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNHANLTCKGLRAYSSTVFGPT 362

Query: 368 CDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYS 419
           CDALDTVLTG QLPEL++ DWLVFP MGAYTAAAGS+FNGFNTAAI T++  S
Sbjct: 363 CDALDTVLTGHQLPELQINDWLVFPHMGAYTAAAGSSFNGFNTAAILTHLASS 413

The following BLAST results are available for this feature:

BLAST of Lsi08G012880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DCOR_DATST	1.6e-150	64.89	Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1	[more]
DCOR_SOLLC	3.4e-148	63.87	Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2	[more]
DCOR_CAPAN	1.3e-147	62.97	Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1	[more]
DCOR_TRYBB	9.1e-93	45.89	Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2	[more]
DCOR_CHICK	6.1e-89	45.22	Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1	[more]

BLAST of Lsi08G012880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI9_CUCSA	1.9e-177	83.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348140 PE=3 SV=1	[more]
B9H5C8_POPTR	2.2e-162	68.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26760g PE=3 SV=2	[more]
A0A061FL05_THECC	1.9e-161	69.46	Pyridoxal-dependent decarboxylase family protein, putative OS=Theobroma cacao GN...	[more]
G4XUJ8_ERYCB	2.4e-161	66.50	Ornithine decarboxylase OS=Erythroxylum coca GN=ODC PE=2 SV=1	[more]
A2TBH8_THECC	2.1e-160	69.21	Putative ornithine decarboxylase OS=Theobroma cacao PE=2 SV=1	[more]

BLAST of Lsi08G012880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi08G012880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089068\|ref\|XP_008445311.1\|	1.1e-218	87.82	PREDICTED: ornithine decarboxylase-like [Cucumis melo]	[more]
gi\|449450648\|ref\|XP_004143074.1\|	1.3e-184	86.02	PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase-like [Cucumis sativus]	[more]
gi\|700207157\|gb\|KGN62276.1\|	2.7e-177	83.87	hypothetical protein Csa_2G348140 [Cucumis sativus]	[more]
gi\|743918189\|ref\|XP_011003098.1\|	2.2e-163	69.01	PREDICTED: ornithine decarboxylase-like [Populus euphratica]	[more]
gi\|566173405\|ref\|XP_002307756.2\|	3.2e-162	68.52	hypothetical protein POPTR_0005s26760g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006596	polyamine biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR022657	De-COase2_CS
IPR022653	De-COase2_pyr-phos_BS
IPR022644	De-COase2_N
IPR022643	De-COase2_C
IPR009006	Ala_racemase/Decarboxylase_C
IPR002433	Orn_de-COase
IPR000183	Orn/DAP/Arg_de-COase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0033387	putrescine biosynthetic process from ornithine
biological_process	GO:0006596	polyamine biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004586	ornithine decarboxylase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G012880.1	Lsi08G012880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000183	Ornithine/DAP/Arg decarboxylase	PRINTS	PR01179	ODADCRBXLASE	coord: 81..99 score: 1.1E-31coord: 204..217 score: 1.1E-31coord: 393..406 score: 1.1E-31coord: 101..113 score: 1.1E-31coord: 284..303 score: 1.1
IPR002433	Ornithine decarboxylase	PRINTS	PR01182	ORNDCRBXLASE	coord: 319..332 score: 3.1E-62coord: 53..77 score: 3.1E-62coord: 360..370 score: 3.1E-62coord: 380..393 score: 3.1E-62coord: 79..106 score: 3.1E-62coord: 123..147 score: 3.1E-62coord: 153..175 score: 3.1
IPR009006	Alanine racemase/group IV decarboxylase, C-terminal	GENE3D	G3DSA:2.40.37.10		coord: 280..411 score: 1.6
IPR009006	Alanine racemase/group IV decarboxylase, C-terminal	unknown	SSF50621	Alanine racemase C-terminal domain-like	coord: 277..410 score: 1.42
IPR022643	Orn/DAP/Arg decarboxylase 2, C-terminal	PFAM	PF00278	Orn_DAP_Arg_deC	coord: 299..410 score: 1.3
IPR022644	Orn/DAP/Arg decarboxylase 2, N-terminal	PFAM	PF02784	Orn_Arg_deC_N	coord: 63..294 score: 2.3
IPR022653	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	PROSITE	PS00878	ODR_DC_2_1	coord: 81..99 scor
IPR022657	Orn/DAP/Arg decarboxylase 2, conserved site	PROSITE	PS00879	ODR_DC_2_2	coord: 242..256 scor
None	No IPR available	PANTHER	PTHR11482	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	coord: 42..418 score: 1.7E
None	No IPR available	PANTHER	PTHR11482:SF6	ORNITHINE DECARBOXYLASE 1-RELATED	coord: 42..418 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G012880	Cucumber (Gy14) v1	cgylsiB638
Lsi08G012880	Cucurbita maxima (Rimu)	cmalsiB184
Lsi08G012880	Cucurbita maxima (Rimu)	cmalsiB739
Lsi08G012880	Cucurbita moschata (Rifu)	cmolsiB175
Lsi08G012880	Cucurbita moschata (Rifu)	cmolsiB731
Lsi08G012880	Cucurbita pepo (Zucchini)	cpelsiB100
Lsi08G012880	Cucurbita pepo (Zucchini)	cpelsiB685
Lsi08G012880	Wild cucumber (PI 183967)	cpilsiB142
Lsi08G012880	Cucumber (Chinese Long) v2	culsiB143
Lsi08G012880	Melon (DHL92) v3.5.1	lsimeB474
Lsi08G012880	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G012880	Watermelon (97103) v1	lsiwmB465
Lsi08G012880	Cucumber (Gy14) v2	cgyblsiB130
Lsi08G012880	Melon (DHL92) v3.6.1	lsimedB493
Lsi08G012880	Silver-seed gourd	carlsiB128
Lsi08G012880	Silver-seed gourd	carlsiB898
Lsi08G012880	Cucumber (Chinese Long) v3	cuclsiB156
Lsi08G012880	Watermelon (97103) v2	lsiwmbB444
Lsi08G012880	Wax gourd	lsiwgoB592