Lsi08G012410 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G012410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCCR4-NOT transcription complex family protein
Locationchr08 : 20857869 .. 20858693 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAAGAGTTTGCGCTTATCCGTGAGATTGTTGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCTGGTGTTGTACTTCGTCCTCTGGGTGCCTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAGTTGGGTCTTACGTTCTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGTGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAGCTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGAGGCTTACCGAATGATCAGGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAACTATTAGAGGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGTTCTATACAGAAATACGCAGGTGTTCTGTATGGTCTCGGTGTTGACAATGGACAACGTACTAATTGA

mRNA sequence

ATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAAGAGTTTGCGCTTATCCGTGAGATTGTTGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCTGGTGTTGTACTTCGTCCTCTGGGTGCCTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAGTTGGGTCTTACGTTCTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGTGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAGCTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGAGGCTTACCGAATGATCAGGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAACTATTAGAGGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGTTCTATACAGAAATACGCAGGTGTTCTGTATGGTCTCGGTGTTGACAATGGACAACGTACTAATTGA

Coding sequence (CDS)

ATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAAGAGTTTGCGCTTATCCGTGAGATTGTTGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCTGGTGTTGTACTTCGTCCTCTGGGTGCCTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAGTTGGGTCTTACGTTCTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGTGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAGCTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGAGGCTTACCGAATGATCAGGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAACTATTAGAGGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGTTCTATACAGAAATACGCAGGTGTTCTGTATGGTCTCGGTGTTGACAATGGACAACGTACTAATTGA

Protein sequence

MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN
Homology
[Close]
BLAST of Lsi08G012410 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 449.1 bits (1154), Expect = 3.4e-125
Identity = 207/272 (76.10%), Postives = 240/272 (88.24%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NLE E ALIRE+VD+F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNIGNDIFASDSIE 120
           +Y TLK NV +LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF++ +DI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P  Q GFFE+I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 272
           +CTFRKL+  FF GS++KY+GVLYGLGV+NGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]
BLAST of Lsi08G012410 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 2.9e-124
Identity = 203/271 (74.91%), Postives = 237/271 (87.45%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 272
           CTFRKL+  FF G + KY+GVLYGLGV+NGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]
BLAST of Lsi08G012410 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.2e-122
Identity = 204/268 (76.12%), Postives = 235/268 (87.69%), Query Frame = 1 

Query: 6   KGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTL 65
           K DSI IREVW+ NL EEFALIREIVD+F+YIAMDTEFPGVVL+P+  FK  ND NYRTL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCG 125
           K+NV++LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFNIG DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAG 185
           IDF+KN E+GIDV RFGEL+MSSG+VLND ++WVTFH GYDFGYL+KLLTC+ LP  QA 
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRK 245
           FF+L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRNTFFNGSIQKYAGVLYGLGVDNGQRT 274
           L+  +F GS +KY GVLYGLGV++G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]
BLAST of Lsi08G012410 vs. Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 7.9e-98
Identity = 169/264 (64.02%), Postives = 208/264 (78.79%), Query Frame = 1 

Query: 8   DSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIN------DYN 67
           D+I+IREVWN NLE+E ALI + +D+F Y+AMDTEFPG+V + + A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 68  YRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELL 127
           Y TLK NV MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+ +D+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 128 RQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPN 187
           R+  ID +KNNE G+D  RF ELLM SGVVLND ++WVTFH GYDFGYLLKLL+ + LP 
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 188 DQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTAC 247
           + + FF+ +  +FPVVYDIK+LM FC +L+GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 248 TFRKLRNTFFNGSIQKYAGVLYGL 266
           TF K++  FF GS+ KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]
BLAST of Lsi08G012410 vs. Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-80
Identity = 146/260 (56.15%), Postives = 190/260 (73.08%), Query Frame = 1 

Query: 9   SIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDN 68
           S +I EVW  NL+EE   IR+++ ++NY+AMDTEFPGVV RP+G F++  DY Y+ L+ N
Sbjct: 9   SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68

Query: 69  VEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDF 128
           V++LK+IQLGLTF +E G  P  GT     WQFNF+ FN+  D++A DSIELL   GI F
Sbjct: 69  VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 128

Query: 129 QKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAGFFE 188
           +K+ EEGI+   F ELLM+SGVVL + V W++FHSGYDFGYL+K+LT   LP ++  FFE
Sbjct: 129 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 188

Query: 189 LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRN 248
           ++ ++FPV+YD+K+LMK C +L GGL ++AE LE+ERIG  HQAGSDSLLT   F K+R 
Sbjct: 189 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 248

Query: 249 TFFNGSIQ--KYAGVLYGLG 267
            FF   I   KY G LYGLG
Sbjct: 249 MFFEDHIDDAKYCGHLYGLG 263

[Close]
BLAST of Lsi08G012410 vs. TrEMBL
Match: A0A0A0LMH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382610 PE=4 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 1.2e-156
Identity = 265/274 (96.72%), Postives = 272/274 (99.27%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]
BLAST of Lsi08G012410 vs. TrEMBL
Match: A0A067KMK9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07101 PE=4 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 1.2e-145
Identity = 246/275 (89.45%), Postives = 262/275 (95.27%), Query Frame = 1 

Query: 1   MSILPKGD-SIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIND 60
           MSI+PK D SIQIREVWN NLEEEFALIREIVD+FNY+AMDTEFPGVVLRP+G FKNIND
Sbjct: 1   MSIIPKNDDSIQIREVWNDNLEEEFALIREIVDQFNYVAMDTEFPGVVLRPVGNFKNIND 60

Query: 61  YNYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIE 120
           YNY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI  DIFASDSIE
Sbjct: 61  YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQCGIDF+KNNE+GIDVNRFGELLMSSGVVLND V WVTFHSGYDFGYLLKLLTCR L
Sbjct: 121 LLRQCGIDFKKNNEKGIDVNRFGELLMSSGVVLNDSVYWVTFHSGYDFGYLLKLLTCRSL 180

Query: 181 PNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P+ QAGFF+LIN+YFPVVYDIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT
Sbjct: 181 PDTQAGFFDLINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLT 240

Query: 241 ACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           +CTFRKLR+ FFNGS +KYAGVLYGLGV+NGQ TN
Sbjct: 241 SCTFRKLRDNFFNGSAEKYAGVLYGLGVENGQNTN 275

[Close]
BLAST of Lsi08G012410 vs. TrEMBL
Match: B9RNX3_RICCO (Ccr4-associated factor, putative OS=Ricinus communis GN=RCOM_0921770 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 2.7e-145
Identity = 240/273 (87.91%), Postives = 260/273 (95.24%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSI+PKGDSI IREVWN NLEEEF LIREIVD+FNY+AMDTEFPGVVLRP+G FKNINDY
Sbjct: 1   MSIIPKGDSIHIREVWNDNLEEEFTLIREIVDQFNYVAMDTEFPGVVLRPVGNFKNINDY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI  DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDF+KNNE+GIDVNRFGEL+MSSG+VLND V+WVTFHSGYDFGYLLKLLTCR LP
Sbjct: 121 LRQCGIDFKKNNEKGIDVNRFGELMMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + QAGFF+LIN YFP+VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DTQAGFFDLINTYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRT 274
           CTFRKLR+ FFNGS +KYAGVLYGLGV+NGQ T
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVENGQNT 273

[Close]
BLAST of Lsi08G012410 vs. TrEMBL
Match: W9QRX8_9ROSA (Putative CCR4-associated factor 1-7-like protein OS=Morus notabilis GN=L484_014468 PE=4 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 3.5e-145
Identity = 245/276 (88.77%), Postives = 264/276 (95.65%), Query Frame = 1 

Query: 1   MSILPK--GDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIN 60
           MSIL K  GDSIQIREVWN NLEEEFALIREIVD++NY+AMDTEFPGVVLRP+G FKNIN
Sbjct: 1   MSILTKGDGDSIQIREVWNDNLEEEFALIREIVDKYNYVAMDTEFPGVVLRPVGNFKNIN 60

Query: 61  DYNYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSI 120
           DYNY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI  DIFASDSI
Sbjct: 61  DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSI 120

Query: 121 ELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRG 180
           ELLRQCGIDF+KNNE+GIDVNRFGELLMSSG+VLND V+WVTFHSGYDFGYLLKLLTC+ 
Sbjct: 121 ELLRQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCQS 180

Query: 181 LPNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLL 240
           LP+ QAGFF+LINVYFP+VYDIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLL
Sbjct: 181 LPDTQAGFFDLINVYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLL 240

Query: 241 TACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           T+CTFRKLR+TFFNGS +KYAGVLYGLGV+NGQ TN
Sbjct: 241 TSCTFRKLRDTFFNGSTEKYAGVLYGLGVENGQTTN 276

[Close]
BLAST of Lsi08G012410 vs. TrEMBL
Match: A0A0D2UK39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G244300 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 8.7e-144
Identity = 238/274 (86.86%), Postives = 258/274 (94.16%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS LPKG+S+ IREVWN NLEEEFALIREIVD +NY+AMDTEFPGVVLRP+G FKNINDY
Sbjct: 1   MSGLPKGESVHIREVWNDNLEEEFALIREIVDTYNYVAMDTEFPGVVLRPVGTFKNINDY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFN+  DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNLSEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDF+KNNE+GIDV RFGELLMSSGVVLNDDV+WVTFHSGYDFGYLLKLLTCR LP
Sbjct: 121 LRQCGIDFKKNNEKGIDVTRFGELLMSSGVVLNDDVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + QAGFF+LI +YFP+VYDIKH+MKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT+
Sbjct: 181 DSQAGFFDLIKIYFPMVYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+ FFNGS +KYAGVLYGLGV NGQ TN
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVQNGQNTN 274

[Close]
BLAST of Lsi08G012410 vs. TAIR10
Match: AT2G32070.1 (AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 449.1 bits (1154), Expect = 1.9e-126
Identity = 207/272 (76.10%), Postives = 240/272 (88.24%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NLE E ALIRE+VD+F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNIGNDIFASDSIE 120
           +Y TLK NV +LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF++ +DI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P  Q GFFE+I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 272
           +CTFRKL+  FF GS++KY+GVLYGLGV+NGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]
BLAST of Lsi08G012410 vs. TAIR10
Match: AT1G80780.3 (AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 441.8 bits (1135), Expect = 3.1e-124
Identity = 201/269 (74.72%), Postives = 235/269 (87.36%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDN 270
           CTFRKL+  FF G + KY+GVLYGLGV+N
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVEN 269

[Close]
BLAST of Lsi08G012410 vs. TAIR10
Match: AT5G10960.1 (AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 440.7 bits (1132), Expect = 6.8e-124
Identity = 204/268 (76.12%), Postives = 235/268 (87.69%), Query Frame = 1 

Query: 6   KGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTL 65
           K DSI IREVW+ NL EEFALIREIVD+F+YIAMDTEFPGVVL+P+  FK  ND NYRTL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCG 125
           K+NV++LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFNIG DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAG 185
           IDF+KN E+GIDV RFGEL+MSSG+VLND ++WVTFH GYDFGYL+KLLTC+ LP  QA 
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRK 245
           FF+L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRNTFFNGSIQKYAGVLYGLGVDNGQRT 274
           L+  +F GS +KY GVLYGLGV++G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]
BLAST of Lsi08G012410 vs. TAIR10
Match: AT1G15920.2 (AT1G15920.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 358.2 bits (918), Expect = 4.4e-99
Identity = 169/264 (64.02%), Postives = 208/264 (78.79%), Query Frame = 1 

Query: 8   DSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIN------DYN 67
           D+I+IREVWN NLE+E ALI + +D+F Y+AMDTEFPG+V + + A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 68  YRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELL 127
           Y TLK NV MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+ +D+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 128 RQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPN 187
           R+  ID +KNNE G+D  RF ELLM SGVVLND ++WVTFH GYDFGYLLKLL+ + LP 
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 188 DQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTAC 247
           + + FF+ +  +FPVVYDIK+LM FC +L+GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 248 TFRKLRNTFFNGSIQKYAGVLYGL 266
           TF K++  FF GS+ KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]
BLAST of Lsi08G012410 vs. TAIR10
Match: AT3G44260.1 (AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-76
Identity = 145/269 (53.90%), Postives = 190/269 (70.63%), Query Frame = 1 

Query: 5   PKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRT 64
           P G ++  REVW  NLE EF LI EI+D++ +I+MDTEFPGV+ +    F N +D  Y  
Sbjct: 12  PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 71

Query: 65  LKDNVEMLKLIQLGLTFSDENGNLPTCGTD--KFCIWQFNFREFNIGNDIFASDSIELLR 124
           LK NV+ L LIQ+GLT SD NGNLP  G D  +  IW+FNFR+F++  D  A DSIELLR
Sbjct: 72  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 131

Query: 125 QCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPND 184
           + GIDF++N  +G++  RF EL+MSSG+V N++V+WVTFHS YDFGYL+K+LT R LP  
Sbjct: 132 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 191

Query: 185 QAGFFELINVYF-PVVYDIKHLMKFC-NSLHGGLNKLAELLEVER-IGVCHQAGSDSLLT 244
              F  ++ V F   VYD+KH+MKFC   L GGL+++A  LEV R +G CHQAGSDSLLT
Sbjct: 192 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 251

Query: 245 ACTFRKLRNTFF-NGSIQKYAGVLYGLGV 268
              F+++R+ +F     +K+AGVLYGL V
Sbjct: 252 WHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279

[Close]
BLAST of Lsi08G012410 vs. NCBI nr
Match: gi|659088972|ref|XP_008445259.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo])

HSP 1 Score: 561.6 bits (1446), Expect = 7.5e-157
Identity = 266/274 (97.08%), Postives = 272/274 (99.27%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]
BLAST of Lsi08G012410 vs. NCBI nr
Match: gi|449441868|ref|XP_004138704.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis sativus])

HSP 1 Score: 560.5 bits (1443), Expect = 1.7e-156
Identity = 265/274 (96.72%), Postives = 272/274 (99.27%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           NDQAGFFELINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]
BLAST of Lsi08G012410 vs. NCBI nr
Match: gi|802626869|ref|XP_012076450.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas])

HSP 1 Score: 523.9 bits (1348), Expect = 1.7e-145
Identity = 246/275 (89.45%), Postives = 262/275 (95.27%), Query Frame = 1 

Query: 1   MSILPKGD-SIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIND 60
           MSI+PK D SIQIREVWN NLEEEFALIREIVD+FNY+AMDTEFPGVVLRP+G FKNIND
Sbjct: 1   MSIIPKNDDSIQIREVWNDNLEEEFALIREIVDQFNYVAMDTEFPGVVLRPVGNFKNIND 60

Query: 61  YNYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIE 120
           YNY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI  DIFASDSIE
Sbjct: 61  YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQCGIDF+KNNE+GIDVNRFGELLMSSGVVLND V WVTFHSGYDFGYLLKLLTCR L
Sbjct: 121 LLRQCGIDFKKNNEKGIDVNRFGELLMSSGVVLNDSVYWVTFHSGYDFGYLLKLLTCRSL 180

Query: 181 PNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P+ QAGFF+LIN+YFPVVYDIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT
Sbjct: 181 PDTQAGFFDLINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLT 240

Query: 241 ACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           +CTFRKLR+ FFNGS +KYAGVLYGLGV+NGQ TN
Sbjct: 241 SCTFRKLRDNFFNGSAEKYAGVLYGLGVENGQNTN 275

[Close]
BLAST of Lsi08G012410 vs. NCBI nr
Match: gi|1000974262|ref|XP_015572459.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Ricinus communis])

HSP 1 Score: 522.7 bits (1345), Expect = 3.9e-145
Identity = 240/273 (87.91%), Postives = 260/273 (95.24%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSI+PKGDSI IREVWN NLEEEF LIREIVD+FNY+AMDTEFPGVVLRP+G FKNINDY
Sbjct: 1   MSIIPKGDSIHIREVWNDNLEEEFTLIREIVDQFNYVAMDTEFPGVVLRPVGNFKNINDY 60

Query: 61  NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI  DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDF+KNNE+GIDVNRFGEL+MSSG+VLND V+WVTFHSGYDFGYLLKLLTCR LP
Sbjct: 121 LRQCGIDFKKNNEKGIDVNRFGELMMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + QAGFF+LIN YFP+VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DTQAGFFDLINTYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRT 274
           CTFRKLR+ FFNGS +KYAGVLYGLGV+NGQ T
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVENGQNT 273

[Close]
BLAST of Lsi08G012410 vs. NCBI nr
Match: gi|703074973|ref|XP_010089956.1| (putative CCR4-associated factor 1-7-like protein [Morus notabilis])

HSP 1 Score: 522.3 bits (1344), Expect = 5.0e-145
Identity = 245/276 (88.77%), Postives = 264/276 (95.65%), Query Frame = 1 

Query: 1   MSILPK--GDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIN 60
           MSIL K  GDSIQIREVWN NLEEEFALIREIVD++NY+AMDTEFPGVVLRP+G FKNIN
Sbjct: 1   MSILTKGDGDSIQIREVWNDNLEEEFALIREIVDKYNYVAMDTEFPGVVLRPVGNFKNIN 60

Query: 61  DYNYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSI 120
           DYNY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI  DIFASDSI
Sbjct: 61  DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSI 120

Query: 121 ELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRG 180
           ELLRQCGIDF+KNNE+GIDVNRFGELLMSSG+VLND V+WVTFHSGYDFGYLLKLLTC+ 
Sbjct: 121 ELLRQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCQS 180

Query: 181 LPNDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLL 240
           LP+ QAGFF+LINVYFP+VYDIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLL
Sbjct: 181 LPDTQAGFFDLINVYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLL 240

Query: 241 TACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQRTN 275
           T+CTFRKLR+TFFNGS +KYAGVLYGLGV+NGQ TN
Sbjct: 241 TSCTFRKLRDTFFNGSTEKYAGVLYGLGVENGQTTN 276

The following BLAST results are available for this feature:
BLAST of Lsi08G012410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1G_ARATH3.4e-12576.10Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
CAF1F_ARATH2.9e-12474.91Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1J_ARATH1.2e-12276.12Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ... [more]
CAF1B_ARATH7.9e-9864.02Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE... [more]
CNOT7_BOVIN1.5e-8056.15CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1[more]
BLAST of Lsi08G012410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMH2_CUCSA1.2e-15696.72Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382610 PE=4 SV=1[more]
A0A067KMK9_JATCU1.2e-14589.45Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07101 PE=4 SV=1[more]
B9RNX3_RICCO2.7e-14587.91Ccr4-associated factor, putative OS=Ricinus communis GN=RCOM_0921770 PE=4 SV=1[more]
W9QRX8_9ROSA3.5e-14588.77Putative CCR4-associated factor 1-7-like protein OS=Morus notabilis GN=L484_0144... [more]
A0A0D2UK39_GOSRA8.7e-14486.86Uncharacterized protein OS=Gossypium raimondii GN=B456_010G244300 PE=4 SV=1[more]
BLAST of Lsi08G012410 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32070.11.9e-12676.10 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G80780.33.1e-12474.72 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT5G10960.16.8e-12476.12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G15920.24.4e-9964.02 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT3G44260.11.4e-7653.90 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of Lsi08G012410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088972|ref|XP_008445259.1|7.5e-15797.08PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo][more]
gi|449441868|ref|XP_004138704.1|1.7e-15696.72PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis sativus][more]
gi|802626869|ref|XP_012076450.1|1.7e-14589.45PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas][more]
gi|1000974262|ref|XP_015572459.1|3.9e-14587.91PREDICTED: probable CCR4-associated factor 1 homolog 7 [Ricinus communis][more]
gi|703074973|ref|XP_010089956.1|5.0e-14588.77putative CCR4-associated factor 1-7-like protein [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR006941RNase_CAF1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component GO:0030014 CCR4-NOT complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G012410.1Lsi08G012410.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 15..136
score: 5.9E-11coord: 161..243
score: 1.
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 5..267
score: 7.8E
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 12..265
score: 4.0
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 1..274
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G012410Cucumber (Gy14) v2cgyblsiB126
Lsi08G012410Cucumber (Gy14) v2cgyblsiB290
Lsi08G012410Melon (DHL92) v3.6.1lsimedB493
Lsi08G012410Melon (DHL92) v3.6.1lsimedB505
Lsi08G012410Silver-seed gourdcarlsiB128
Lsi08G012410Silver-seed gourdcarlsiB580
Lsi08G012410Silver-seed gourdcarlsiB898
Lsi08G012410Cucumber (Chinese Long) v3cuclsiB152
Lsi08G012410Cucumber (Chinese Long) v3cuclsiB338
Lsi08G012410Watermelon (97103) v2lsiwmbB440
Lsi08G012410Watermelon (97103) v2lsiwmbB444
Lsi08G012410Wax gourdlsiwgoB592
Lsi08G012410Wax gourdlsiwgoB622
Lsi08G012410Bottle gourd (USVL1VR-Ls)lsilsiB123
Lsi08G012410Bottle gourd (USVL1VR-Ls)lsilsiB151
Lsi08G012410Cucumber (Gy14) v1cgylsiB267
Lsi08G012410Cucumber (Gy14) v1cgylsiB441
Lsi08G012410Cucurbita maxima (Rimu)cmalsiB039
Lsi08G012410Cucurbita maxima (Rimu)cmalsiB184
Lsi08G012410Cucurbita maxima (Rimu)cmalsiB739
Lsi08G012410Cucurbita moschata (Rifu)cmolsiB027
Lsi08G012410Cucurbita moschata (Rifu)cmolsiB175
Lsi08G012410Cucurbita moschata (Rifu)cmolsiB731
Lsi08G012410Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G012410Cucurbita pepo (Zucchini)cpelsiB651
Lsi08G012410Cucurbita pepo (Zucchini)cpelsiB685
Lsi08G012410Wild cucumber (PI 183967)cpilsiB139
Lsi08G012410Wild cucumber (PI 183967)cpilsiB318
Lsi08G012410Wild cucumber (PI 183967)cpilsiB551
Lsi08G012410Cucumber (Chinese Long) v2culsiB140
Lsi08G012410Cucumber (Chinese Long) v2culsiB318
Lsi08G012410Cucumber (Chinese Long) v2culsiB536
Lsi08G012410Melon (DHL92) v3.5.1lsimeB468
Lsi08G012410Melon (DHL92) v3.5.1lsimeB474
Lsi08G012410Melon (DHL92) v3.5.1lsimeB486
Lsi08G012410Watermelon (Charleston Gray)lsiwcgB434
Lsi08G012410Watermelon (Charleston Gray)lsiwcgB438
Lsi08G012410Watermelon (97103) v1lsiwmB465
Lsi08G012410Watermelon (97103) v1lsiwmB484