Lsi08G001810 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G001810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ethylene-responsive transcription factor 12
Location	chr08 : 3908631 .. 3909104 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAAGCTCAACCACGGCGTCTCGGAGCTAACGATTCGGTTTCGAAGCCCTTTCGAGGGGTTCGAAAGAGGAGTTGGGGTCGCTATGTCTCGGAGATACGGCTGCCGGGGAAGAAGACGCGTGTGTGGCTTGGCTCCTTCGCCTCCCCCGAGATGGCAGCGCGTGCCTATGACTCGGCAGCAGCATTTTTGAGAGGCACCTCCGCGGTGCTCAACTTCCCCGACTCTGTGAGCTCGCTCCCACAGCCGGAGTCGTGCTCGAGAGAACACATTCAATCGGCAGCGGCAAAGGCAGCGGCGCAAGTGAGGGAAATGGAGGCAGGAGAGCGAGGAACGAGAAGCGGATGGAGTCCGACGACATTCGAGCAGGTGAAGGAGGCACCATTGTTGAGTCCATTGAGGTTGGGTCTTCTTGGCTTTGGACCAGCCTCAGATGAAGAAGACACTTTGTTGTTACCAGCCTATTTCTAA

mRNA sequence

ATGACTCAAGCTCAACCACGGCGTCTCGGAGCTAACGATTCGGTTTCGAAGCCCTTTCGAGGGGTTCGAAAGAGGAGTTGGGGTCGCTATGTCTCGGAGATACGGCTGCCGGGGAAGAAGACGCGTGTGTGGCTTGGCTCCTTCGCCTCCCCCGAGATGGCAGCGCGTGCCTATGACTCGGCAGCAGCATTTTTGAGAGGCACCTCCGCGGTGCTCAACTTCCCCGACTCTGTGAGCTCGCTCCCACAGCCGGAGTCGTGCTCGAGAGAACACATTCAATCGGCAGCGGCAAAGGCAGCGGCGCAAGTGAGGGAAATGGAGGCAGGAGAGCGAGGAACGAGAAGCGGATGGAGTCCGACGACATTCGAGCAGGTGAAGGAGGCACCATTGTTGAGTCCATTGAGGTTGGGTCTTCTTGGCTTTGGACCAGCCTCAGATGAAGAAGACACTTTGTTGTTACCAGCCTATTTCTAA

Coding sequence (CDS)

ATGACTCAAGCTCAACCACGGCGTCTCGGAGCTAACGATTCGGTTTCGAAGCCCTTTCGAGGGGTTCGAAAGAGGAGTTGGGGTCGCTATGTCTCGGAGATACGGCTGCCGGGGAAGAAGACGCGTGTGTGGCTTGGCTCCTTCGCCTCCCCCGAGATGGCAGCGCGTGCCTATGACTCGGCAGCAGCATTTTTGAGAGGCACCTCCGCGGTGCTCAACTTCCCCGACTCTGTGAGCTCGCTCCCACAGCCGGAGTCGTGCTCGAGAGAACACATTCAATCGGCAGCGGCAAAGGCAGCGGCGCAAGTGAGGGAAATGGAGGCAGGAGAGCGAGGAACGAGAAGCGGATGGAGTCCGACGACATTCGAGCAGGTGAAGGAGGCACCATTGTTGAGTCCATTGAGGTTGGGTCTTCTTGGCTTTGGACCAGCCTCAGATGAAGAAGACACTTTGTTGTTACCAGCCTATTTCTAA

Protein sequence

MTQAQPRRLGANDSVSKPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVREMEAGERGTRSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDEEDTLLLPAYF

Homology

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BLAST of Lsi08G001810 vs. Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-27
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           +RG+R+R WG++VSEIR PGKKTR+WLGS+ + EMAA AYD+AA  LRG    LNFP+ V
Sbjct: 20  YRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELV 79

Query: 79  SSLPQPESCSREHIQSAAAKAAAQVR-------EMEAGERGTRSGWSPTTFEQVKEAPLL 138
            S P+PES S EHIQ+AA  AA   +        +E+G+  +R G SP   + + E+PL 
Sbjct: 80  DSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALESGQGLSRVGLSPDQIQAINESPLD 139

Query: 139 SPLRLGLLGFGPASDEED 150
           SP R+G +     +D E+
Sbjct: 140 SP-RMGWMQDLEVADYEE 156

[Close]

BLAST of Lsi08G001810 vs. Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-22
Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = 1


Query: 5   QPRRLGANDSVSKP-FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAA 64
           + ++    DS   P +RGVRKR+WG++VSEIR P KK+R+WLG+F SPEMAARA+D AA 
Sbjct: 21  EEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAAL 80

Query: 65  FLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVREMEAGERGTRSGWSPTTFE 124
            ++G SA+LNFPD   S P+P S S   IQ AA KAA     ME  +  + S  S  TF 
Sbjct: 81  SIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAA----HMETSQSFSSS--SSLTFS 140

Query: 125 QVKEAPLLSPL 135
             + +  L  L
Sbjct: 141 SSQSSSSLESL 145

[Close]

BLAST of Lsi08G001810 vs. Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.9e-22
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           + GVRKR WG++VSEIR P KK+R+WLGSF  PEMAA+AYD AA  L+G  A LNFP+ +
Sbjct: 45  YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104

Query: 79  SSLPQPESCSREHIQSAAAKAAAQVREMEAGE 111
             LP+P +C+   IQ AAAKAA  V+ ++ G+
Sbjct: 105 EDLPRPSTCTPRDIQVAAAKAANAVKIIKMGD 136

[Close]

BLAST of Lsi08G001810 vs. Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.9e-22
Identity = 51/83 (61.45%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           +RGVR R+WG++VSEIR P KK+R+WLG+F++PEMAARA+D+AA  ++GTSAVLNFP+  
Sbjct: 43  YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELA 102

Query: 79  SSLPQPESCSREHIQSAAAKAAA 102
           + LP+P S S   +Q+AAA AAA
Sbjct: 103 TYLPRPASSSPRDVQAAAAVAAA 125

[Close]

BLAST of Lsi08G001810 vs. Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 9.0e-22
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 1


Query: 11  ANDSVSKP-FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTS 70
           ++ S+  P +RGVR RSWG++VSEIR P KKTR+WLG+F + +MAARA+D AA  ++G+S
Sbjct: 52  SSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSS 111

Query: 71  AVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVREMEAGER 112
           AVLNFP+  S  P+P S S   IQ+AAA+AAA V E +  E+
Sbjct: 112 AVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEK 153

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BLAST of Lsi08G001810 vs. TrEMBL
Match: A0A0A0KSQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647260 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.4e-68
Identity = 139/163 (85.28%), Postives = 145/163 (88.96%), Query Frame = 1


Query: 1   MTQAQPRRLGANDSVSKPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS 60
           MTQAQPR LGA+ S++KPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS
Sbjct: 1   MTQAQPRHLGASGSITKPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS 60

Query: 61  AAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVREMEAGE-----RGTRS 120
           AAAFLRGTSA+LNFPDSVSSLPQPESCSREHIQ AAAKAAAQVR ME  E     +GTRS
Sbjct: 61  AAAFLRGTSAILNFPDSVSSLPQPESCSREHIQLAAAKAAAQVRTMETMEGDGDQQGTRS 120

Query: 121 GWSPTTFEQVKEAPLLSPLRLGLLGFGPASDEED-TLLLPAYF 158
           GWS T FEQVKE PLLSPLRLGLLGFGPA +EED  LLLP YF
Sbjct: 121 GWSSTMFEQVKEVPLLSPLRLGLLGFGPALNEEDPLLLLPTYF 163

[Close]

BLAST of Lsi08G001810 vs. TrEMBL
Match: A0A0L9V8B8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g213800 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 84/130 (64.62%), Postives = 93/130 (71.54%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           FRGVRKRSWGRYVSEIRLPG+KTR+WLGSFASPEMAARAYDSAA FL+GTSA LNFPD V
Sbjct: 25  FRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFFLKGTSATLNFPDLV 84

Query: 79  SSLPQPESCSREHIQSAAAKAAAQVREMEAGERGTRSGW----------SPTTFEQVKEA 138
            SLP+P S SR  IQSAAA AA     +        S W          S  +FE VK+A
Sbjct: 85  HSLPRPLSSSRRDIQSAAATAALHPPSLGTDTNSNSSSWLDNLGDESRISTMSFEDVKDA 144

[Close]

BLAST of Lsi08G001810 vs. TrEMBL
Match: A0A0S3SEW2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G268700 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 84/130 (64.62%), Postives = 93/130 (71.54%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           FRGVRKRSWGRYVSEIRLPG+KTR+WLGSFASPEMAARAYDSAA FL+GTSA LNFPD V
Sbjct: 25  FRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFFLKGTSATLNFPDLV 84

Query: 79  SSLPQPESCSREHIQSAAAKAAAQVREMEAGERGTRSGW----------SPTTFEQVKEA 138
            SLP+P S SR  IQSAAA AA     +        S W          S  +FE VK+A
Sbjct: 85  HSLPRPLSSSRRDIQSAAATAALHPPSLGTDTNSNSSSWLDNLGDESRISTMSFEDVKDA 144

[Close]

BLAST of Lsi08G001810 vs. TrEMBL
Match: U5FIC5_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09530g PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33
Identity = 84/135 (62.22%), Postives = 92/135 (68.15%), Query Frame = 1


Query: 18  PFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDS 77
           PF GVRKRSWGRYVSEIRLPGKKTRVWLGSF SPEMAARA+DSAA FL+G SA LNFPDS
Sbjct: 75  PFHGVRKRSWGRYVSEIRLPGKKTRVWLGSFGSPEMAARAHDSAAFFLKGNSACLNFPDS 134

Query: 78  VSSLPQPESCSREHIQSAAAKAAAQVREMEAGE----RGTRSGWSP-------------T 136
           V SLP+P+SCS + IQ AAAKAA    E   G         SG  P              
Sbjct: 135 VGSLPRPKSCSSKDIQLAAAKAATGFDETRVGNVVGFEDCESGGEPDSSIWLGLGEIETV 194

[Close]

BLAST of Lsi08G001810 vs. TrEMBL
Match: A9PL84_POPTR (TINY-like protein OS=Populus trichocarpa GN=TINYL15 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33
Identity = 84/135 (62.22%), Postives = 92/135 (68.15%), Query Frame = 1


Query: 18  PFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDS 77
           PF GVRKRSWGRYVSEIRLPGKKTRVWLGSF SPEMAARA+DSAA FL+G SA LNFPDS
Sbjct: 35  PFHGVRKRSWGRYVSEIRLPGKKTRVWLGSFGSPEMAARAHDSAAFFLKGNSACLNFPDS 94

Query: 78  VSSLPQPESCSREHIQSAAAKAAAQVREMEAGE----RGTRSGWSP-------------T 136
           V SLP+P+SCS + IQ AAAKAA    E   G         SG  P              
Sbjct: 95  VGSLPRPKSCSSKDIQLAAAKAATGFDESRVGNGVGFEDCESGGEPDGSIWLGLGEIETV 154

[Close]

BLAST of Lsi08G001810 vs. TAIR10
Match: AT1G33760.1 (AT1G33760.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-28
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           +RG+R+R WG++VSEIR PGKKTR+WLGS+ + EMAA AYD+AA  LRG    LNFP+ V
Sbjct: 20  YRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELV 79

Query: 79  SSLPQPESCSREHIQSAAAKAAAQVR-------EMEAGERGTRSGWSPTTFEQVKEAPLL 138
            S P+PES S EHIQ+AA  AA   +        +E+G+  +R G SP   + + E+PL 
Sbjct: 80  DSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALESGQGLSRVGLSPDQIQAINESPLD 139

Query: 139 SPLRLGLLGFGPASDEED 150
           SP R+G +     +D E+
Sbjct: 140 SP-RMGWMQDLEVADYEE 156

[Close]

BLAST of Lsi08G001810 vs. TAIR10
Match: AT5G25810.1 (AT5G25810.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-23
Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = 1


Query: 5   QPRRLGANDSVSKP-FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAA 64
           + ++    DS   P +RGVRKR+WG++VSEIR P KK+R+WLG+F SPEMAARA+D AA 
Sbjct: 21  EEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAAL 80

Query: 65  FLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVREMEAGERGTRSGWSPTTFE 124
            ++G SA+LNFPD   S P+P S S   IQ AA KAA     ME  +  + S  S  TF 
Sbjct: 81  SIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAA----HMETSQSFSSS--SSLTFS 140

Query: 125 QVKEAPLLSPL 135
             + +  L  L
Sbjct: 141 SSQSSSSLESL 145

[Close]

BLAST of Lsi08G001810 vs. TAIR10
Match: AT1G01250.1 (AT1G01250.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.9e-23
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           + GVRKR WG++VSEIR P KK+R+WLGSF  PEMAA+AYD AA  L+G  A LNFP+ +
Sbjct: 45  YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104

Query: 79  SSLPQPESCSREHIQSAAAKAAAQVREMEAGE 111
             LP+P +C+   IQ AAAKAA  V+ ++ G+
Sbjct: 105 EDLPRPSTCTPRDIQVAAAKAANAVKIIKMGD 136

[Close]

BLAST of Lsi08G001810 vs. TAIR10
Match: AT1G77200.1 (AT1G77200.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.9e-23
Identity = 51/83 (61.45%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           +RGVR R+WG++VSEIR P KK+R+WLG+F++PEMAARA+D+AA  ++GTSAVLNFP+  
Sbjct: 43  YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELA 102

Query: 79  SSLPQPESCSREHIQSAAAKAAA 102
           + LP+P S S   +Q+AAA AAA
Sbjct: 103 TYLPRPASSSPRDVQAAAAVAAA 125

[Close]

BLAST of Lsi08G001810 vs. TAIR10
Match: AT3G16280.1 (AT3G16280.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 104.8 bits (260), Expect = 5.1e-23
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 1


Query: 11  ANDSVSKP-FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTS 70
           ++ S+  P +RGVR RSWG++VSEIR P KKTR+WLG+F + +MAARA+D AA  ++G+S
Sbjct: 52  SSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSS 111

Query: 71  AVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVREMEAGER 112
           AVLNFP+  S  P+P S S   IQ+AAA+AAA V E +  E+
Sbjct: 112 AVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEK 153

[Close]

BLAST of Lsi08G001810 vs. NCBI nr
Match: gi|449447711|ref|XP_004141611.1| (PREDICTED: ethylene-responsive transcription factor ERF022-like [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 6.4e-68
Identity = 139/163 (85.28%), Postives = 145/163 (88.96%), Query Frame = 1


Query: 1   MTQAQPRRLGANDSVSKPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS 60
           MTQAQPR LGA+ S++KPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS
Sbjct: 1   MTQAQPRHLGASGSITKPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS 60

Query: 61  AAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVREMEAGE-----RGTRS 120
           AAAFLRGTSA+LNFPDSVSSLPQPESCSREHIQ AAAKAAAQVR ME  E     +GTRS
Sbjct: 61  AAAFLRGTSAILNFPDSVSSLPQPESCSREHIQLAAAKAAAQVRTMETMEGDGDQQGTRS 120

Query: 121 GWSPTTFEQVKEAPLLSPLRLGLLGFGPASDEED-TLLLPAYF 158
           GWS T FEQVKE PLLSPLRLGLLGFGPA +EED  LLLP YF
Sbjct: 121 GWSSTMFEQVKEVPLLSPLRLGLLGFGPALNEEDPLLLLPTYF 163

[Close]

BLAST of Lsi08G001810 vs. NCBI nr
Match: gi|659119539|ref|XP_008459710.1| (PREDICTED: ethylene-responsive transcription factor ERF022-like [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 3.3e-64
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 1


Query: 1   MTQAQPRRLGANDSVSKPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS 60
           MTQAQ + L AN S++KPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS
Sbjct: 1   MTQAQQQHLRANGSITKPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDS 60

Query: 61  AAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVR--EMEAG-ERGTRSGW 120
           AAAFLRG SAVLNFPDSVSSLPQPESCSREHIQ AAAKAAAQVR   +E G ++ TRSGW
Sbjct: 61  AAAFLRGNSAVLNFPDSVSSLPQPESCSREHIQLAAAKAAAQVRTETVEGGDQQRTRSGW 120

Query: 121 SPTTFEQVKEAPLLSPLRLGLLGFGPASDEED-TLLLPAYF 158
           S T FEQVKE PLLSPLRLGLLGFGPA +EED +LLLP YF
Sbjct: 121 SSTMFEQVKEVPLLSPLRLGLLGFGPALNEEDPSLLLPTYF 161

[Close]

BLAST of Lsi08G001810 vs. NCBI nr
Match: gi|950937703|ref|XP_014521333.1| (PREDICTED: dehydration-responsive element-binding protein 3-like [Vigna radiata var. radiata])

HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35
Identity = 87/145 (60.00%), Postives = 98/145 (67.59%), Query Frame = 1


Query: 4   AQPRRLGANDSVSKPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAA 63
           ++ RR  A       FRGVRKRSWGRYVSEIRLPG+KTR+WLGSFASPEMAARAYDSAA 
Sbjct: 12  SRKRRREAEAEAETAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAF 71

Query: 64  FLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQVREMEAGERGTRSGW------ 123
           FL+GTSA LNFPD V SLP+P S SR  IQSAAA AA     +        S W      
Sbjct: 72  FLKGTSATLNFPDLVHSLPRPLSSSRRDIQSAAATAALHPPSLGTDSNSNSSSWLENLGD 131

Query: 124 ----SPTTFEQVKEAPLLSPLRLGL 139
               S  +FE VK+APL+SPLR+ L
Sbjct: 132 ESRISTMSFEDVKDAPLMSPLRVDL 156

[Close]

BLAST of Lsi08G001810 vs. NCBI nr
Match: gi|920709314|gb|KOM51311.1| (hypothetical protein LR48_Vigan08g213800 [Vigna angularis])

HSP 1 Score: 153.7 bits (387), Expect = 2.7e-34
Identity = 84/130 (64.62%), Postives = 93/130 (71.54%), Query Frame = 1


Query: 19  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV 78
           FRGVRKRSWGRYVSEIRLPG+KTR+WLGSFASPEMAARAYDSAA FL+GTSA LNFPD V
Sbjct: 25  FRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFFLKGTSATLNFPDLV 84

Query: 79  SSLPQPESCSREHIQSAAAKAAAQVREMEAGERGTRSGW----------SPTTFEQVKEA 138
            SLP+P S SR  IQSAAA AA     +        S W          S  +FE VK+A
Sbjct: 85  HSLPRPLSSSRRDIQSAAATAALHPPSLGTDTNSNSSSWLDNLGDESRISTMSFEDVKDA 144

[Close]

BLAST of Lsi08G001810 vs. NCBI nr
Match: gi|1009178830|ref|XP_015870745.1| (PREDICTED: ethylene-responsive transcription factor ERF039-like [Ziziphus jujuba])

HSP 1 Score: 152.5 bits (384), Expect = 6.0e-34
Identity = 86/137 (62.77%), Postives = 94/137 (68.61%), Query Frame = 1


Query: 18  PFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDS 77
           PFRGVRKRSWGRYVSEIRLPGKKTRVWLGSF SPEMAARAYDSAA +L+G SA LNFPD 
Sbjct: 42  PFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFGSPEMAARAYDSAAFYLKGNSASLNFPDL 101

Query: 78  VSSLPQPESCSREHIQSAAAKAAAQVRE-------------MEAGERGTRSGW------S 136
             SLP+PES SR  IQSAAAKAA Q +E              E  +  T   W       
Sbjct: 102 AESLPRPESSSRRDIQSAAAKAALQPKESRSIVNSSRESVSRELTDLSTEYWWGLDFEGG 161

The following BLAST results are available for this feature:

BLAST of Lsi08G001810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF22_ARATH	2.4e-27	48.55	Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF02...	[more]
TINY_ARATH	4.0e-22	48.09	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE...	[more]
ERF23_ARATH	6.9e-22	56.52	Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF02...	[more]
ERF37_ARATH	6.9e-22	61.45	Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF03...	[more]
ERF36_ARATH	9.0e-22	54.90	Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF03...	[more]

BLAST of Lsi08G001810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSQ8_CUCSA	4.4e-68	85.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647260 PE=4 SV=1	[more]
A0A0L9V8B8_PHAAN	1.9e-34	64.62	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g213800 PE=4 SV=1	[more]
A0A0S3SEW2_PHAAN	1.9e-34	64.62	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G268700 PE=...	[more]
U5FIC5_POPTR	2.7e-33	62.22	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09530g P...	[more]
A9PL84_POPTR	2.7e-33	62.22	TINY-like protein OS=Populus trichocarpa GN=TINYL15 PE=4 SV=1	[more]

BLAST of Lsi08G001810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33760.1	1.4e-28	48.55	Integrase-type DNA-binding superfamily protein	[more]
AT5G25810.1	2.3e-23	48.09	Integrase-type DNA-binding superfamily protein	[more]
AT1G01250.1	3.9e-23	56.52	Integrase-type DNA-binding superfamily protein	[more]
AT1G77200.1	3.9e-23	61.45	Integrase-type DNA-binding superfamily protein	[more]
AT3G16280.1	5.1e-23	54.90	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Lsi08G001810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447711\|ref\|XP_004141611.1\|	6.4e-68	85.28	PREDICTED: ethylene-responsive transcription factor ERF022-like [Cucumis sativus...	[more]
gi\|659119539\|ref\|XP_008459710.1\|	3.3e-64	83.85	PREDICTED: ethylene-responsive transcription factor ERF022-like [Cucumis melo]	[more]
gi\|950937703\|ref\|XP_014521333.1\|	3.2e-35	60.00	PREDICTED: dehydration-responsive element-binding protein 3-like [Vigna radiata ...	[more]
gi\|920709314\|gb\|KOM51311.1\|	2.7e-34	64.62	hypothetical protein LR48_Vigan08g213800 [Vigna angularis]	[more]
gi\|1009178830\|ref\|XP_015870745.1\|	6.0e-34	62.77	PREDICTED: ethylene-responsive transcription factor ERF039-like [Ziziphus jujuba...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G001810.1	Lsi08G001810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 19..30 score: 2.2E-11coord: 57..77 score: 2.2
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 19..77 score: 9.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 19..67 score: 2.7
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 18..81 score: 1.3
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 18..75 score: 2
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 19..77 score: 9.15
None	No IPR available	PANTHER	PTHR31985	FAMILY NOT NAMED	coord: 3..110 score: 7.7
None	No IPR available	PANTHER	PTHR31985:SF26	SUBFAMILY NOT NAMED	coord: 3..110 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G001810	Csa5G647260	Cucumber (Chinese Long) v2	culsiB391
Lsi08G001810	CSPI05G30310	Wild cucumber (PI 183967)	cpilsiB395
Lsi08G001810	Cucsa.237800	Cucumber (Gy14) v1	cgylsiB389
Lsi08G001810	CmaCh09G012040	Cucurbita maxima (Rimu)	cmalsiB035
Lsi08G001810	CmoCh09G012040	Cucurbita moschata (Rifu)	cmolsiB026
Lsi08G001810	Cla012379	Watermelon (97103) v1	lsiwmB467
Lsi08G001810	MELO3C022119	Melon (DHL92) v3.5.1	lsimeB461
Lsi08G001810	ClCG08G001830	Watermelon (Charleston Gray)	lsiwcgB440
Lsi08G001810	MELO3C022119.2	Melon (DHL92) v3.6.1	lsimedB479
Lsi08G001810	Cla97C08G145930	Watermelon (97103) v2	lsiwmbB445
Lsi08G001810	Bhi06G000119	Wax gourd	lsiwgoB586
Lsi08G001810	CsGy5G029710	Cucumber (Gy14) v2	cgyblsiB358
Lsi08G001810	Carg27048	Silver-seed gourd	carlsiB023
Lsi08G001810	CsaV3_5G039410	Cucumber (Chinese Long) v3	cuclsiB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G001810	Cucurbita maxima (Rimu)	cmalsiB453
Lsi08G001810	Cucurbita moschata (Rifu)	cmolsiB440
Lsi08G001810	Cucurbita pepo (Zucchini)	cpelsiB479
Lsi08G001810	Cucurbita pepo (Zucchini)	cpelsiB650