Lsi08G000690 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G000690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA polymerase II transcription mediator
Location	chr08 : 1456143 .. 1463193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATGTATATCCAAAATTTCAGGGACAAATCCGTCATTTCGATTTTCTGCGGTCATCGGCTGAGCCCTCTGTCAGTGAACTTTCATCCCGATCGCGGACTTGTCTTCCATTCTAGGGCTCGCTCCAAACCTTTTCAATCCCGACATTATTCCGGGAAAATACTGTGTGAATATGGACGAAGACATGAAGGTCTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAGAACGGTCTCGAACGATTTCCATCGTATGTTCTTTCTTCCCTGGTTTTTTCCCCATTTCTTTTATTCCTGAGATAACAGAGGAAGCACTATTTAGTTCGTATGTGTGTTAAGGTAGCAGAAGATGTCTTAGTTGATGAGTGTCTGCTTGTCCTTCGACAGTGTTAATTCTGATTACATTTGTGTCTGTACGTTGGTGATTGCTTGGAGTGAACTCTACACAATTGATCCCATTCTGCTAAATTGACTAGAATCTAATCTTTAAATGTATTCCTTGATTTTCCTGGTGAAAGTTTATGCTCAATTTTCTTGATTAATTGAGATTGATTTGTGTTATATTGTTAACAGAGATGTTGGTTATGAAGAGAAACGGTTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGAGCTCCAAGGAGAGTTCAACACCGTGGCAATGGCAGAACATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGACCTTATCAACACCGTGAGTTTATATATCAAATGCCTCTAAGCTGCTAGATCTTTTACCATACTGTTCTTTGTATATATAATCGGAAAACGTTGCTTGTATTAGTTTCAATCAATAAGTGTGTATGCAAATGTTTCTTTGTTCTAAAGAAAAAAGGTGCATGCAAATGTAGAGGCAATTTGTCTTAGATTTTACATTACATATATGTCTTGGCATATTTTTCTTTTTTTGGAAAGCGTGGTACTAAAGTGCAGTAGTCCTTTCGAACTTAACTTAAGTGCAAGGTGCAGTAAAGAGAGGGAAAAAAAAAAAAAAAAAAGGTGCTCACTAGAAAATGCTAATAATTTTCTTTACACATGAGGTGTAATAGTATTATGAATATTAAGATGATGAAAAGTTGAAGAAATTAGAGATTTTATTGGATATTGTCGAGAAAAAATAAATGAATATTTTTTAGTTTCTACCTTAAAAGTTATAAAAAAAATATATAATTGGGCTTCAGGCACTGAAGCGCGTATCTCAAGTGCCCTTCATTAAGGGTGCCTTTTCTGGGAAGTCCATGTAGGTGTAGTTTTCTGAACACGGTGTCTATGTACAGAGGATTCGTAAACCTACAAACTGATCTTTAATTCTTATTAGCTTTATGGATATACAGCAACAATGTGTCTGACAAAGTCATCTTGTTGACTTGAGTTTTCTTATCCTAAGCTCTCTTTAAATAATGACCATTTAGTTCATTTCTCCCAGCAAAAATGATGCTTCATTTTCTTTTTCATTCTTTCTTGCAAGAATTGGTTGGGAGAACTAGGGTCTGTCAGTTTCATTTGGGAGGAGATAGGATTAAACTGCCAAATGTCAGGATCTAGAAATTGTGATATTTTTTCTCTGCTTGTTGTAATTGATTAGTTTTAATAAACTGGTTTCTTGAGAATATTCTATTTAGAAATATGGTGCCATTATAAATATTGTCTGTCTTGATATAACTGTAGGTGGAAGCTAATGATGCAGTAACAGTGGCTGGGATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTGTAGCAACGAAACTACAATGCTTTCGAGTATTATTTTTATCCTTCTTTTGTTCTCAGAAGTGATGCTTGGCTTACGCCCTTATTGCCTTATCTTAGCTTACTTTGATTGGGCTGGCACGACCACATTTTAAAGATTAATTACCAGTATTATTCAATTCAAATTTTATCTTACTATTTGTACTATCATTTTGAAAGTGCCTGATTTTATCATTTACACGTTACTCTCTACAGCATCTTGGTAAATATTTCAAGCAGTCAGCTAAAGGTTTGGAACGACAGGTTGCAAGGGAAGCAAGATTTTATGGTGCTTTAATTCGGTAATCAATTCTCTTCAACGATCATTGTGCAATGAATATATTCTCAAAATTGTATGTCATTGTGAATGTGGCAGTACGTGCACAGTAATATTCTTTAGAATCCATGAAGTGTCCTTGAATTAAAAAGTCTTTATCATAAAGTATAAATATGTGATTTTTATTCACACGCCTTTATCAATTTAGATAAAATAGAAGTTTCTGTTAAGAAAACTTAGTTTATGCACCTCATATGTTTGTTTATTTTAGGAAATGGAGCTTTCATTGAAGGGCATTTAAAAAACAAGCCCACAAAGGAATTCCAACACTAACTACAAGAAAGGATTCCACTTTAAAAGAACTAAACCAAGCTGATAATAATTACAAAAAGTTGATGGGCGAACACCCACAATGAAGCATTAAAGGTGACAACCTCCCAAACCCCTCCTCCCAAGATCTCTCCACCCCTATAAAAATCATACTATTGCTCGCCAGTCAAATACCTACAGACAACATAAAAACAAGCATGCCACAGGACTTTGCTCTTATCTAAGAAAGAAGAGTTCAGGAGCACCTCCTTAATCATAGAGCAACAAATTTTGCTTCAAACTTAGCGAAGAACAAAAGAACTCAACCACTAACTCCAGAGAGAGTAAGCGAATTGGCAATCCAACAATAAATGATCGATGTCCTCTTGCTGCCAACAAAAAACACATGGTTGCAGATTTAACATAAAAGAATGATGTCTACGGATACAATCCGGGGTATTAACTCTCCCATGCATCACCAACCAAGCAAAGAATTTCACTTTGTCAGGGATTTTAATCTTCTAAAGAGAGTAGAAAGTATAGGAAAGTTGTGGGAGGAGGAAGTGAAACACAAAATGGGAAAAAAAATGATCTACAAGAAAGTTCCTAAGAAGGATTAGGGACAAAACCTGAAAGTTGGAGGAGTCCCTCCTAGGACACGCAAGGATGACAAAAGAAGGGAAAATGCCTAAGAAGGATTGGTCTGGAATGATAGAACGAAGGTTTGCCACTTTTGTCGCCTCTTGGAAAGGACGACGAAAACCCAAAGGGAAGGAAGGGGAGAGCTCAGATGAAGTCAAAATAGAGGCCATTGAGTGCATACTCTAATCGGACAGCTAATGTAAATGCGGAAGCAGAGAACAAAAAACCCTGCAACATGCAACCCACTACTCAATAGGGTGCAGACCTTACCTACACAAAGAGATAGTCTCCATGAAGCCTCATATGTTATACTAAAAGATTCATAGTATAAATGATCCATTCTAGGTATTAATTGCCACAATGAAATCTATATTTGCGTTCAGGGCATAACTGCAAAGTTCTCCTTTTTGGATCATAAGGTGGATAGCAGCAAAAAAAAATTGTGATTTTCTTAAGGAAATGAAAGTAACCCGTATTCAATCAATTCTTTCCAATAACTGTTGTGTTTTTTTGCCATAACCAAAAAGCTCATGAGAGACTTCTCATGGATGGGTGTGTGAGCACTGACACTGAGAATGAGTCTTTTCATCTAAGTGGAGCATGGTGTTGTGTTTGTATGAGAGTGGCAGATTGGGGATCGGTAATGGCTGACCAATAACCTTGCTCTAATTAAGTGGCTTTGGACTCTGGAGATGCTTTTGGTAGCAATCTACTTTAGTGCATAAGATTATTGCAATTAGATTTGGGGTTTAGTCCACTAGTTGGATTCCCAACTAGGCTTCATTAGTCTTGCATCATGGTTCTAGAATGCCATTGCCATTGCTTAGGCTTCTTTTTTTAGTTCTTGAGCTTCTCAAAACGGTAAGATTGTAGTAAATCATTGTACTTTTCACTAAATCGATTGCTTCCTTGGAGGAGGTGATTTTCTACGTTGTGTGGGCTTGTGAAAGTTAGATCATTGGCCAGTTGGGATTCCTGCCATATCGTGTTTGAATGCAATAGGGGATCTTTTAAGTTATATCGCTTCTTAACTGAGGCTGCTTTCAGTATAATGCCACTTTGGGCTTCCAGCTTGCCAATTCATTATCAGGCATATACCTTACCTAATATCTTTTTATAATTGAAAGTTTCTTTTCCTTTTATTTTGTGGGGATGGTGGCTCGAGAGGAGTAGTAGAATTTTTAGACAGGTTGAGAGATCTTCAGAAGGGGTGTGGGAGATTGTGAGGTTTAATGCTTCTTTATGTGTCTGTTAATAAGCGTTTTAATTCCCATTTTATGGGCTTGTTTTTTGTATGCCTTTGTAAGTGTGGTTGCTCCAGTTTTCCCTTTGTATAGGTTTTGTTTAGCCTGCTAGCATAGTTTCTATATGGGGCTTCTTCCTAGCCCCCTGCCACTTTATAAGTTGCACCTTCTCGTATTATTTCTTTCTTTTTTTATGGTTCCTTCCTTCTCCTCTTTCTTTTTTTAGTAACTGTCTCGTTCCTTATTAAAAATAAAACAACCTTTGGATTTTCTGAGGTTTAGCCTTCTTAATATCATGAGCTTGTTTTTTAATTCTTTCATATTGTTTCATTTAAAAATGGAAAATTTCCACCATTTGAAATTTATCTTTTTTACTTTTGGGGTTAACTTTATTTAGTTTCGAATGAAACCATAAATACAAGTATATATTAATGTATTATAGTGCAATTTATATAGAAACAATCGGAAACCTTTTGATGCTCTTAATCCTTTCCAATCTTCATATATTTTCAGTATTTGCTGATGATGTATATCAGATTGCAGCAAAATTGGAAGGTTAAAAGGCAGCGAGTGGCTGCTCCAGCTCCTGCAAATGAAGGCTTTACCATTGATTTATTTGACAATTCATCGTGTGACCCTTCGTCTGTGTTTCGACCATCTTCATCTACTATTCGTGTTGATCATGATTCGTCTGGAATGCTGGCAATTAATTTACCTACAAATTCATGTCATTCCCTTCGTTTTGGATTTCTGAGTGGATGTAATGTGGAAAATCCTCTGGATCGCGGTAAAAATGAGTCTACAAATTCTTCCAATCAGTCTTCCATGAACAGGGAGAAGGAATTTACAAATGACGATGAGTACATTAAGGAAACAAACTCACTTCTCCGTCAAGTTCACCATGCCATTTTCAGTGAGCAGGTAGTTTCTTCAATACTTTGATCTTGCTCATTATAAGTCTTTGCTACTTTTGTTCCCCACCACATGATGCACCATTTTTTCCCTGGTTCCAGGTGTTTGATTTGGTGAATCGTGAAGCATTCAATCCATCCTTAGGTATCAACGTGACTGGCATACGAGAGAATTACTTGCAATTAAGTATAGATCAGGGTACCTCGGTCTTTATCTCTCTTGTGCCATCTGGTCAAAGTTGCCAAGCAGTTGAAGGTGCAAATACTGGGATTCTGGATAATGCAAATTTACCTTTTGATTCCCTTGATGGGATTGAATTACTAGATAGAAGTGATCCCCTTGAAAAGAAATTGCGGAATCCTAATCATATAACCTTTGAGATATATCTGCAACAAATTTTTCATGAGCTAGTATTTGTAAAATCAAATGATAGACCCATTTCATCATTAAGCAGGCAATCAGGTCAAGGTTCTAATGATGGGTTTGGGCTTCTTGGTCATTTCTGTTTGTCTTTGGCTCACAGAATGTTTGCAAACAATGTTCTCATGGAGCTCGAAAATGTGGTAAAGTCCTAATTTCTTAATAACTCAATTTCATATGAAAGTACACTGCTTCTAGCACAGTGCTTCTGTATTTGATGTTACCAGCATATTAATCTTGTAGATTATCTTTGGTTCGTTCTTAGGTTTGGAAAGTCCCGTTTCTTCAGTTGATATCTCATCCCACTTGGAATTCTCGAAAATCGTCGTGGACGTTTTTTATGGAAGTTCCTCGGTCCATACTTCATCCTAATAGCATCCAGGCTCGTACATCAGACAGTCATCAGATGAATAATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCGCCTAATGTCGTTGGCTTGTTCAACGGAAATTCCAAGGATATCTATTCGATGAACAGATATGGTTGTGACTTGGCTGATCTTCCCGTTACAATTCTGTTGCAGGTGAGTTCAATGTAGATTTCCATGCTTTTGAGCTTCTTTATCAATGGAAAGTAAAGTAATAGTATCGTTTTGTTTCCGTAACAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAGCTCTAACCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACACTCCGGCTGGTAGCCCATGTGGACCCAGAAGATCCTCAAGGATGCCTTTCTTGGTGGTTAGTAATGGACGATGACTTGATGGAGGACAGGAAACTTAATTTTGACAGTTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGTCATTTATCTCTAGAAGTGTTGCATTCAACACTAATGGATTTGGTTAGTTTGTGCAATGGAGTTGGTGGTAGACTATAACCATGCCTTTCTTGTTTGGTATTACTAATAGAAATTGCATTGGTTCTTGTAAGGTGGATGGCAAACTAAGGATATGATTTAAAGTTACAATTAGAAACTACGTAGAGAGACTGGAAAATGCAAGAGAAAGAAGGTGAGAATGAAAGGAATCGGATTTGTCTAATCTTTTTTCTTTATAGTCAACCTTTTTTTCCCCCTTTCGGGGGTGGTCGTGGTTCTACAGTGCGTTGGGGGAAAAGATGAGAACGAAATGAGGGAAATTTTCTTCCTTCTATTGAAAATTTTAGTGTGAGAGTTCTACTCTACATTGGAGAGGAAGGTGCAAGGTGCATGAAATTGCTTGATTCTATAGAGATGGAGATGGAGGAAAGAGAACCAGAGAGAGA

mRNA sequence

CATATGTATATCCAAAATTTCAGGGACAAATCCGTCATTTCGATTTTCTGCGGTCATCGGCTGAGCCCTCTGTCAGTGAACTTTCATCCCGATCGCGGACTTGTCTTCCATTCTAGGGCTCGCTCCAAACCTTTTCAATCCCGACATTATTCCGGGAAAATACTGTGTGAATATGGACGAAGACATGAAGGTCTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAGAACGGTCTCGAACGATTTCCATCAGATGTTGGTTATGAAGAGAAACGGTTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGAGCTCCAAGGAGAGTTCAACACCGTGGCAATGGCAGAACATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGACCTTATCAACACCGTGGAAGCTAATGATGCAGTAACAGTGGCTGGGATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTGTAGCAACGAAACTACAATGCTTTCGACATCTTGGTAAATATTTCAAGCAGTCAGCTAAAGGTTTGGAACGACAGGTTGCAAGGGAAGCAAGATTTTATGGTGCTTTAATTCGATTGCAGCAAAATTGGAAGGTTAAAAGGCAGCGAGTGGCTGCTCCAGCTCCTGCAAATGAAGGCTTTACCATTGATTTATTTGACAATTCATCGTGTGACCCTTCGTCTGTGTTTCGACCATCTTCATCTACTATTCGTGTTGATCATGATTCGTCTGGAATGCTGGCAATTAATTTACCTACAAATTCATGTCATTCCCTTCGTTTTGGATTTCTGAGTGGATGTAATGTGGAAAATCCTCTGGATCGCGGTAAAAATGAGTCTACAAATTCTTCCAATCAGTCTTCCATGAACAGGGAGAAGGAATTTACAAATGACGATGAGTACATTAAGGAAACAAACTCACTTCTCCGTCAAGTTCACCATGCCATTTTCAGTGAGCAGGTGTTTGATTTGGTGAATCGTGAAGCATTCAATCCATCCTTAGGTATCAACGTGACTGGCATACGAGAGAATTACTTGCAATTAAGTATAGATCAGGGTACCTCGGTCTTTATCTCTCTTGTGCCATCTGGTCAAAGTTGCCAAGCAGTTGAAGGTGCAAATACTGGGATTCTGGATAATGCAAATTTACCTTTTGATTCCCTTGATGGGATTGAATTACTAGATAGAAGTGATCCCCTTGAAAAGAAATTGCGGAATCCTAATCATATAACCTTTGAGATATATCTGCAACAAATTTTTCATGAGCTAGTATTTGTAAAATCAAATGATAGACCCATTTCATCATTAAGCAGGCAATCAGGTCAAGGTTCTAATGATGGGTTTGGGCTTCTTGGTCATTTCTGTTTGTCTTTGGCTCACAGAATGTTTGCAAACAATGTTCTCATGGAGCTCGAAAATGTGGTTTGGAAAGTCCCGTTTCTTCAGTTGATATCTCATCCCACTTGGAATTCTCGAAAATCGTCGTGGACGTTTTTTATGGAAGTTCCTCGGTCCATACTTCATCCTAATAGCATCCAGGCTCGTACATCAGACAGTCATCAGATGAATAATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCGCCTAATGTCGTTGGCTTGTTCAACGGAAATTCCAAGGATATCTATTCGATGAACAGATATGGTTGTGACTTGGCTGATCTTCCCGTTACAATTCTGTTGCAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAGCTCTAACCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACACTCCGGCTGGTAGCCCATGTGGACCCAGAAGATCCTCAAGGATGCCTTTCTTGGTGGTTAGTAATGGACGATGACTTGATGGAGGACAGGAAACTTAATTTTGACAGTTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGTCATTTATCTCTAGAAGTGTTGCATTCAACACTAATGGATTTGGTTAGTTTGTGCAATGGAGTTGGTGGTAGACTATAACCATGCCTTTCTTGTTTGGTATTACTAATAGAAATTGCATTGGTTCTTGTAAGGTGGATGGCAAACTAAGGATATGATTTAAAGTTACAATTAGAAACTACGTAGAGAGACTGGAAAATGCAAGAGAAAGAAGGTGAGAATGAAAGGAATCGGATTTGTCTAATCTTTTTTCTTTATAGTCAACCTTTTTTTCCCCCTTTCGGGGGTGGTCGTGGTTCTACAGTGCGTTGGGGGAAAAGATGAGAACGAAATGAGGGAAATTTTCTTCCTTCTATTGAAAATTTTAGTGTGAGAGTTCTACTCTACATTGGAGAGGAAGGTGCAAGGTGCATGAAATTGCTTGATTCTATAGAGATGGAGATGGAGGAAAGAGAACCAGAGAGAGA

Coding sequence (CDS)

ATGGACGAAGACATGAAGGTCTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAGAACGGTCTCGAACGATTTCCATCAGATGTTGGTTATGAAGAGAAACGGTTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGAGCTCCAAGGAGAGTTCAACACCGTGGCAATGGCAGAACATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGACCTTATCAACACCGTGGAAGCTAATGATGCAGTAACAGTGGCTGGGATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTGTAGCAACGAAACTACAATGCTTTCGACATCTTGGTAAATATTTCAAGCAGTCAGCTAAAGGTTTGGAACGACAGGTTGCAAGGGAAGCAAGATTTTATGGTGCTTTAATTCGATTGCAGCAAAATTGGAAGGTTAAAAGGCAGCGAGTGGCTGCTCCAGCTCCTGCAAATGAAGGCTTTACCATTGATTTATTTGACAATTCATCGTGTGACCCTTCGTCTGTGTTTCGACCATCTTCATCTACTATTCGTGTTGATCATGATTCGTCTGGAATGCTGGCAATTAATTTACCTACAAATTCATGTCATTCCCTTCGTTTTGGATTTCTGAGTGGATGTAATGTGGAAAATCCTCTGGATCGCGGTAAAAATGAGTCTACAAATTCTTCCAATCAGTCTTCCATGAACAGGGAGAAGGAATTTACAAATGACGATGAGTACATTAAGGAAACAAACTCACTTCTCCGTCAAGTTCACCATGCCATTTTCAGTGAGCAGGTGTTTGATTTGGTGAATCGTGAAGCATTCAATCCATCCTTAGGTATCAACGTGACTGGCATACGAGAGAATTACTTGCAATTAAGTATAGATCAGGGTACCTCGGTCTTTATCTCTCTTGTGCCATCTGGTCAAAGTTGCCAAGCAGTTGAAGGTGCAAATACTGGGATTCTGGATAATGCAAATTTACCTTTTGATTCCCTTGATGGGATTGAATTACTAGATAGAAGTGATCCCCTTGAAAAGAAATTGCGGAATCCTAATCATATAACCTTTGAGATATATCTGCAACAAATTTTTCATGAGCTAGTATTTGTAAAATCAAATGATAGACCCATTTCATCATTAAGCAGGCAATCAGGTCAAGGTTCTAATGATGGGTTTGGGCTTCTTGGTCATTTCTGTTTGTCTTTGGCTCACAGAATGTTTGCAAACAATGTTCTCATGGAGCTCGAAAATGTGGTTTGGAAAGTCCCGTTTCTTCAGTTGATATCTCATCCCACTTGGAATTCTCGAAAATCGTCGTGGACGTTTTTTATGGAAGTTCCTCGGTCCATACTTCATCCTAATAGCATCCAGGCTCGTACATCAGACAGTCATCAGATGAATAATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCGCCTAATGTCGTTGGCTTGTTCAACGGAAATTCCAAGGATATCTATTCGATGAACAGATATGGTTGTGACTTGGCTGATCTTCCCGTTACAATTCTGTTGCAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAGCTCTAACCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACACTCCGGCTGGTAGCCCATGTGGACCCAGAAGATCCTCAAGGATGCCTTTCTTGGTGGTTAGTAATGGACGATGACTTGATGGAGGACAGGAAACTTAATTTTGACAGTTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGTCATTTATCTCTAGAAGTGTTGCATTCAACACTAATGGATTTGGTTAGTTTGTGCAATGGAGTTGGTGGTAGACTATAA

Protein sequence

MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQKKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLSDLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAPANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCNVENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNREAFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSLDGIELLDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSNDGFGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNRYGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDPEDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNGVGGRL

Homology

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BLAST of Lsi08G000690 vs. Swiss-Prot
Match: MED17_ARATH (Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana GN=MED17 PE=1 SV=1)

HSP 1 Score: 736.5 bits (1900), Expect = 2.6e-211
Identity = 384/659 (58.27%), Postives = 497/659 (75.42%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDD--KK 60
           MD DM++SLD+LP+KRLE+IEENG ERFPSDV Y++KR+SLIRRIDFAWA+E++D+  KK
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEEEDELKKK 60

Query: 61  KQKKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEV 120
           KQKKSSK+S   W+W+ M+ENLQLAHQEL+VIIDLI+TV+ANDAVTVAGMTRPKP+PNE+
Sbjct: 61  KQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPNEI 120

Query: 121 LSDLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAP 180
           LSDL VS ATKLQ +R+LG YFKQSAK LE+++ REARFYGALIRLQ+NWKVKRQR+ A 
Sbjct: 121 LSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRMLAS 180

Query: 181 APANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPTNSCHSLRFGFLSG 240
             +NEGFTIDL D+S  DP+S FRPS+ STIRVDHDS+GMLAIN+P +S +SLRFG++  
Sbjct: 181 NASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGYVGL 240

Query: 241 CNVENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVN 300
             + N  +  ++  + + +      EK   +DD+Y+KET+SLLR+VH +IF+EQ+FD++N
Sbjct: 241 NPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKSIFAEQLFDMLN 300

Query: 301 REAFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFD 360
           REAFN  +G N++G+REN++++SI QG S+F+SL PSG++    +       ++A L  +
Sbjct: 301 REAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS------ESATLLIE 360

Query: 361 SLDGIELLDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSND 420
           S   +E  +  D   KKL  PN  ++EIYLQQIFHE  F K+ D+  S   R S Q   D
Sbjct: 361 SSGRVEPAEGGDYRLKKLGFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRASNQTEKD 420

Query: 421 -GFGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRS 480
              GLL HFCLSL HR+F+N VL+ LE+VV KVP+L LISHPTWNSR SSWT FM VP S
Sbjct: 421 SNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTVPPS 480

Query: 481 ILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSM 540
           I+     + ++ D  +     KTQF TKVVV DDCI++E E  PNVVGL   +S +++S+
Sbjct: 481 IIPQGRSETQSPDGKRN---LKTQFRTKVVVKDDCISVEAECTPNVVGLLKSSSCNLFSI 540

Query: 541 NRYGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHV 600
           N+Y CD+ADLPV IL QVASQ + WL EEA T G KA+R+FLSLS E+ +GE + LVAHV
Sbjct: 541 NKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEGERVSLVAHV 600

Query: 601 DPEDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLC 656
           +PED +GC+SWWLVM++   E+R       + V E RK LGHLSL+VL+S LMDL++LC
Sbjct: 601 NPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSVLMDLINLC 643

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BLAST of Lsi08G000690 vs. TrEMBL
Match: A0A0A0KXX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650410 PE=4 SV=1)

HSP 1 Score: 1258.0 bits (3254), Expect = 0.0e+00
Identity = 630/662 (95.17%), Postives = 644/662 (97.28%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKESSTPWQWQ+MIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVL+
Sbjct: 61  KKSSKESSTPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLA 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP
Sbjct: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCNV 240
           ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLP NSCHSLRFGFLSGCNV
Sbjct: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPPNSCHSLRFGFLSGCNV 240

Query: 241 ENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300
           ENPL+R KNESTN SNQSS+NREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVN+EA
Sbjct: 241 ENPLERDKNESTNPSNQSSVNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNQEA 300

Query: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSLD 360
           FNPS+GINVTGIRENYLQLSIDQGTSVFISLVPSGQS Q VEGAN+ IL+NA+LPFDSLD
Sbjct: 301 FNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSSQTVEGANSEILENASLPFDSLD 360

Query: 361 GIELLDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSNDGFG 420
           GIEL DRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQ SNDG G
Sbjct: 361 GIELPDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQVSNDGSG 420

Query: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHP 480
           LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVP SILHP
Sbjct: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPWSILHP 480

Query: 481 NSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNRYG 540
           NSI+ARTSD +QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYS NRY 
Sbjct: 481 NSIKARTSDGYQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSTNRYS 540

Query: 541 CDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600
           CDLADLPV ILLQVASQ ILWLHEEAL WGIKANRDFLSLSFELEQGETLRLVAHVDPED
Sbjct: 541 CDLADLPVIILLQVASQIILWLHEEALIWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600

Query: 601 PQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNGVGG 660
           PQGCLSWWLVMDD LMEDRKLNF++SDVVPEYRKFLGHLSLEVLHSTLMDLVSLC+GVGG
Sbjct: 601 PQGCLSWWLVMDDGLMEDRKLNFETSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCSGVGG 660

Query: 661 RL 663
            L
Sbjct: 661 SL 662

[Close]

BLAST of Lsi08G000690 vs. TrEMBL
Match: M5VWL4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002594mg PE=4 SV=1)

HSP 1 Score: 893.6 bits (2308), Expect = 1.4e-256
Identity = 462/661 (69.89%), Postives = 539/661 (81.54%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MD  M++SLDKLP+KRL+ IEENGLERFP DVGYEEKR SLIRRIDFAWA+EKD++KK++
Sbjct: 1   MDGKMEISLDKLPIKRLDVIEENGLERFPPDVGYEEKRQSLIRRIDFAWAVEKDENKKQK 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           K S + ++T WQWQ+M+ENLQLAHQELSVIIDLINTVE NDAVTVA MTRPKP  +EV+S
Sbjct: 61  KSSKESAATQWQWQSMVENLQLAHQELSVIIDLINTVETNDAVTVASMTRPKPFHDEVMS 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DL VS ATKLQCFRHLGKYFKQSAK LERQVAREARFYGALIRLQQNWKVKRQRVAA A 
Sbjct: 121 DLAVSAATKLQCFRHLGKYFKQSAKALERQVAREARFYGALIRLQQNWKVKRQRVAASAS 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCN 240
            NEGFTIDLFD+S  DP+++FRPSS ST+RVDHDS+GMLAINLP NS  SL+FGFL    
Sbjct: 181 GNEGFTIDLFDSSLYDPAAIFRPSSLSTVRVDHDSAGMLAINLPPNSYRSLQFGFLGADP 240

Query: 241 VENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNRE 300
             +P+     ES+ +  + S   EKE  +DDE +KET+SLLR+VH AIF EQVFDLVNRE
Sbjct: 241 GVSPI-----ESSQTKIRLSSEAEKESVSDDECVKETHSLLREVHQAIFDEQVFDLVNRE 300

Query: 301 AFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSL 360
           AFN SLG+NVTGI+ENYLQL+I QGTSVFISLVPS +  Q V+  +T  L+N  LP D+L
Sbjct: 301 AFNQSLGVNVTGIQENYLQLNIGQGTSVFISLVPS-RGEQTVDSPSTQNLENTILPLDTL 360

Query: 361 DGIELL-DRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSNDG 420
           DG+EL  D+ D ++K    P+ I+ EIYLQQIFH+ VFVK+ DRP S+ +R SGQ + +G
Sbjct: 361 DGLELAEDKPDTVKKTSLIPDQISCEIYLQQIFHQHVFVKAKDRPTSAGARVSGQLAKEG 420

Query: 421 FGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSIL 480
            GLLGHFC+SLAHR+F+N VL ELENVV  VP+LQL+SHPTW+SR SSW  F+++P SIL
Sbjct: 421 PGLLGHFCMSLAHRIFSNKVLKELENVVKGVPYLQLLSHPTWHSRTSSWMLFVKIPESIL 480

Query: 481 HPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNR 540
           H  + Q RTSD   M N+TK+QF TKVVV DDCI +EGEGAPNVVGLF GNS++I  MNR
Sbjct: 481 H--ACQTRTSDMRHMRNITKSQFHTKVVVTDDCINVEGEGAPNVVGLFKGNSEEICLMNR 540

Query: 541 YGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDP 600
           Y CDLADLPV IL QVASQ I WLHEEAL  GIKANRDFL LSFEL+ GETL LVAHVDP
Sbjct: 541 YDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLCLSFELDLGETLSLVAHVDP 600

Query: 601 EDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNGV 660
           ED +GC+SWWLV++   +E+RKL+ D+SD   E RKFLGHLSLEVL+STLMDLVSLC G 
Sbjct: 601 EDGEGCISWWLVINGGFVEERKLSMDASDGASESRKFLGHLSLEVLYSTLMDLVSLCTGR 653

[Close]

BLAST of Lsi08G000690 vs. TrEMBL
Match: A5BHH4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05020 PE=4 SV=1)

HSP 1 Score: 885.6 bits (2287), Expect = 3.8e-254
Identity = 452/664 (68.07%), Postives = 537/664 (80.87%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MD  M++SLDKLP+KRL+AIEENG ERFP+DVGY++KR+SLIRRIDFAWA+EKD   KKQ
Sbjct: 1   MDGKMEISLDKLPIKRLDAIEENGAERFPTDVGYDDKRVSLIRRIDFAWAVEKDT--KKQ 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KK+SKE +TPW WQ+++ENL+LAHQELSVIIDLI+TVEANDAVTVA MTRPKPLPNEVLS
Sbjct: 61  KKASKEEATPWPWQSLVENLRLAHQELSVIIDLISTVEANDAVTVASMTRPKPLPNEVLS 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DLGVS ATKLQCFRHL KYFKQSAK LE+Q+AREARFYGALIRLQQNWKVKRQRVAA AP
Sbjct: 121 DLGVSAATKLQCFRHLSKYFKQSAKALEQQIAREARFYGALIRLQQNWKVKRQRVAASAP 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCN 240
            NEGF+IDLF NS  DP +VFRPSS ST+RVDHDS+GMLA++LP NSC +L FGFL G  
Sbjct: 181 GNEGFSIDLFSNSLHDPVAVFRPSSLSTVRVDHDSAGMLAVHLPPNSCRALHFGFLGGHL 240

Query: 241 VENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNRE 300
              P +  K ++       S   +K  + D+E +KET+S+LR+ H AIF EQVFDLVNRE
Sbjct: 241 GNIPKEPSKTKTYGPDELPSKEIKKPLS-DNECVKETHSVLREGHQAIFDEQVFDLVNRE 300

Query: 301 AFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSL 360
           AFN S G+NVTGIRENYLQL+I QG SVF+SLVPSGQ  +  +G     L++A LP D+ 
Sbjct: 301 AFNSSSGVNVTGIRENYLQLNIGQGASVFMSLVPSGQDEKTADGMGMQNLESAILPMDTF 360

Query: 361 DGIELLD-RSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISS-LSRQSGQGSND 420
           DG++L D + D  +KK   PN I+ EIYL+Q+FHE VFV++ D+ IS+  ++ S Q + D
Sbjct: 361 DGVKLSDGKHDNDKKKSGFPNRISSEIYLKQLFHEHVFVRAKDKHISAGRTQPSSQPAKD 420

Query: 421 GFGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSI 480
           GFGLLGHFC+SLAHR+F++ VLMELEN+V +VP+L L+SHPTW+SR SSWT  M+VP S 
Sbjct: 421 GFGLLGHFCMSLAHRIFSSKVLMELENLVSRVPYLHLLSHPTWHSRTSSWTLLMKVPESS 480

Query: 481 LHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMN 540
            HP   Q RTSD H + N+ KT F TKVV+NDDCI +EG+GAPNVVGLF G+S+D+ SMN
Sbjct: 481 FHP-GCQTRTSDIHNVKNIIKTHFRTKVVINDDCINVEGDGAPNVVGLFKGSSEDVCSMN 540

Query: 541 RYGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVD 600
           RY CDLAD+PV +L QVASQ I WLHEEAL  GIKANRDFL LSFE++QGE L LVAHV+
Sbjct: 541 RYDCDLADIPVILLQQVASQVIRWLHEEALKVGIKANRDFLCLSFEMDQGEMLSLVAHVN 600

Query: 601 PEDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG 660
           P+DPQGC+SWWLVMDD   ED K + D+ D   EYRKFLGHLSLEVL+STLMDLVSLCNG
Sbjct: 601 PDDPQGCISWWLVMDDGFSEDLKFHTDAPDGGSEYRKFLGHLSLEVLYSTLMDLVSLCNG 659

Query: 661 VGGR 662
            GGR
Sbjct: 661 -GGR 659

[Close]

BLAST of Lsi08G000690 vs. TrEMBL
Match: A0A067K814_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13306 PE=4 SV=1)

HSP 1 Score: 869.4 bits (2245), Expect = 2.8e-249
Identity = 455/665 (68.42%), Postives = 535/665 (80.45%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDD--KK 60
           MD  +++S+DKLPVKRLEAI+ENG ERFP+DVGY+EKR+SLIRRIDFAWA+EK+D+  KK
Sbjct: 1   MDGKIEISIDKLPVKRLEAIDENGAERFPTDVGYDEKRVSLIRRIDFAWAVEKEDEEKKK 60

Query: 61  KQKKSSKESS--TPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPN 120
           KQKKS+KESS  TPW WQ+M+ENLQLAHQELS+IIDLINTVEANDAVTV  MTRPKPLPN
Sbjct: 61  KQKKSAKESSSTTPWPWQSMVENLQLAHQELSIIIDLINTVEANDAVTVNSMTRPKPLPN 120

Query: 121 EVLSDLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVA 180
           E L+DL VS ATKLQC+RHLGKYFKQSAK LE+QVAREARFYGALIRLQQNWKVKRQRVA
Sbjct: 121 EHLADLAVSTATKLQCYRHLGKYFKQSAKALEQQVAREARFYGALIRLQQNWKVKRQRVA 180

Query: 181 APAPANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPTNSCHSLRFGFL 240
           A AP NEGFTIDLFDNS  D +S+FRP+S STIR+DHDS+GMLAI+LP  SC SL FGFL
Sbjct: 181 AIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAIDLPPKSCRSLHFGFL 240

Query: 241 SGCNVENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDL 300
              + E+     K +S+ S    S   EKE  +D+E IKET+ LLR+VH AIF EQVFD+
Sbjct: 241 GVHSNEDVKKSSKIKSSYSVEHPSKETEKESASDNESIKETHLLLRRVHQAIFDEQVFDM 300

Query: 301 VNREAFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLP 360
           VNREAFN SLG+NVTGI+ENYLQLSI  GTSVF+SLVPS +  Q  +G    I + A LP
Sbjct: 301 VNREAFNQSLGVNVTGIQENYLQLSISTGTSVFLSLVPSVEDEQTADGGGHQISETAVLP 360

Query: 361 FDSLDGIELLDRSDP-LEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQG 420
            DS+D ++L +     L KK R PN I+ EIYLQQIFHE VF+K+ DRP+ + +R S Q 
Sbjct: 361 LDSIDEVKLPEEKHVYLHKKSRFPNRISCEIYLQQIFHEHVFLKAKDRPLPTGTRVSSQ- 420

Query: 421 SNDGFGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVP 480
             DG GLLGHFC+++AHR+F+N VLMELENV+ KVP+L LISHPTW+SR SSWT FM+VP
Sbjct: 421 LKDGSGLLGHFCMTVAHRIFSNKVLMELENVICKVPYLHLISHPTWHSRTSSWTIFMKVP 480

Query: 481 RSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY 540
           +SILH +S  ++TSD   M +  KT+F TKVVVNDD I +E EGAPNVVGLF G+S D  
Sbjct: 481 QSILHASS-HSQTSDMKSMKSDIKTEFRTKVVVNDDSINVEAEGAPNVVGLFKGSSDDTC 540

Query: 541 SMNRYGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVA 600
           SMN+Y CDLADLP  IL QVASQ I WLHEEALT GIKANRDFLSLSFEL+QGE L +VA
Sbjct: 541 SMNKYDCDLADLPAIILQQVASQVIRWLHEEALTVGIKANRDFLSLSFELDQGEVLSMVA 600

Query: 601 HVDPEDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSL 660
           HVDPED +GC+SWWLVM+D   E +KL+ D +D   E RKFLG+L L+VL+STLMDLV+L
Sbjct: 601 HVDPEDVEGCISWWLVMEDGFAE-KKLHMDIADDASECRKFLGYLPLDVLYSTLMDLVTL 660

[Close]

BLAST of Lsi08G000690 vs. TrEMBL
Match: W9RGP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006289 PE=4 SV=1)

HSP 1 Score: 865.5 bits (2235), Expect = 4.1e-248
Identity = 450/656 (68.60%), Postives = 528/656 (80.49%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           M+E ++VSLDKLPVKRL+ IEENG ERFPSDVGY+EKRLSLIRRIDFAWA+EKD+ KKKQ
Sbjct: 1   MNEKVQVSLDKLPVKRLDVIEENGAERFPSDVGYDEKRLSLIRRIDFAWAVEKDE-KKKQ 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKS+KES TPW WQ M+ENLQLA QELSVI+DLINTVEANDAVTVAGMTRPKPLPNEVLS
Sbjct: 61  KKSAKESLTPWPWQTMVENLQLAQQELSVIVDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DL VS A KLQ FR LGKYFKQSAK LE+QV REARFYGALIRLQQNWKVKRQR+AA A 
Sbjct: 121 DLAVSAAIKLQGFRSLGKYFKQSAKALEQQVVREARFYGALIRLQQNWKVKRQRIAAAAS 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPS-SSTIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCN 240
            NEGFTIDLFDNS  DP+SV+RP+  S +RV+HD +GMLAINLP NSC SL+FGF     
Sbjct: 181 GNEGFTIDLFDNSLYDPASVYRPTFLSMVRVEHDPAGMLAINLPPNSCRSLQFGFFG--- 240

Query: 241 VENPLDRGK-NESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNR 300
             +P D  + N++   S+  S   EKE  NDDE IKET+ LLRQVH +IF E+VFDLVNR
Sbjct: 241 -VHPCDNTEPNKTKVGSSVHSRETEKEAANDDECIKETHLLLRQVHQSIFDEKVFDLVNR 300

Query: 301 EAFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDS 360
           EAFN SLG+NVTGIRENYLQLSI  G SVFISLV S Q  Q  + A    ++NA LP DS
Sbjct: 301 EAFNQSLGVNVTGIRENYLQLSIGLGNSVFISLVSSNQDDQTGDDAGNQDIENAILPLDS 360

Query: 361 LDGIEL--LDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSN 420
           LDG++L   D+ D   K+L  P++I+ EIYLQQ+FHE VF ++ D+P+S++SR SGQ + 
Sbjct: 361 LDGVKLPEEDKQDTFNKELGTPDYISCEIYLQQLFHEHVFSRAKDKPVSTVSRVSGQPAK 420

Query: 421 DGFGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRS 480
           +G  LLGHFCLSLAHR+F+  VL+ LEN+V  V +LQL+SHPTWNSR SSWT FM++P+S
Sbjct: 421 EGPSLLGHFCLSLAHRIFSKKVLVVLENLVSGVSYLQLLSHPTWNSRTSSWTIFMKIPQS 480

Query: 481 ILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSM 540
           ILH  S Q  TSD H M + TK+QF TKVV+ DD I++EGEGAPNVVGLF G+++++ SM
Sbjct: 481 ILHGGSHQ--TSDLHHMKSTTKSQFRTKVVIKDDFISVEGEGAPNVVGLFKGSAQEVSSM 540

Query: 541 NRYGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHV 600
           NRY C+L DLPV IL QVA Q + WLHEEAL  GIK NRDFLSLSFELEQGETL L+AHV
Sbjct: 541 NRYECNLEDLPVIILQQVAGQIVRWLHEEALMVGIKVNRDFLSLSFELEQGETLTLLAHV 600

Query: 601 DPEDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLV 653
           DPED QGC+SWWLVM+D   E+ KL+ D SD V EYR+FLGHLSL++L+STL+DLV
Sbjct: 601 DPEDAQGCISWWLVMEDGFTEEGKLHMDLSDGVSEYRRFLGHLSLDLLYSTLIDLV 649

[Close]

BLAST of Lsi08G000690 vs. TAIR10
Match: AT5G20170.1 (AT5G20170.1 RNA polymerase II transcription mediators)

HSP 1 Score: 736.5 bits (1900), Expect = 1.5e-212
Identity = 384/659 (58.27%), Postives = 497/659 (75.42%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDD--KK 60
           MD DM++SLD+LP+KRLE+IEENG ERFPSDV Y++KR+SLIRRIDFAWA+E++D+  KK
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEEEDELKKK 60

Query: 61  KQKKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEV 120
           KQKKSSK+S   W+W+ M+ENLQLAHQEL+VIIDLI+TV+ANDAVTVAGMTRPKP+PNE+
Sbjct: 61  KQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPNEI 120

Query: 121 LSDLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAP 180
           LSDL VS ATKLQ +R+LG YFKQSAK LE+++ REARFYGALIRLQ+NWKVKRQR+ A 
Sbjct: 121 LSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRMLAS 180

Query: 181 APANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPTNSCHSLRFGFLSG 240
             +NEGFTIDL D+S  DP+S FRPS+ STIRVDHDS+GMLAIN+P +S +SLRFG++  
Sbjct: 181 NASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGYVGL 240

Query: 241 CNVENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVN 300
             + N  +  ++  + + +      EK   +DD+Y+KET+SLLR+VH +IF+EQ+FD++N
Sbjct: 241 NPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKSIFAEQLFDMLN 300

Query: 301 REAFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFD 360
           REAFN  +G N++G+REN++++SI QG S+F+SL PSG++    +       ++A L  +
Sbjct: 301 REAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS------ESATLLIE 360

Query: 361 SLDGIELLDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSND 420
           S   +E  +  D   KKL  PN  ++EIYLQQIFHE  F K+ D+  S   R S Q   D
Sbjct: 361 SSGRVEPAEGGDYRLKKLGFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRASNQTEKD 420

Query: 421 -GFGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRS 480
              GLL HFCLSL HR+F+N VL+ LE+VV KVP+L LISHPTWNSR SSWT FM VP S
Sbjct: 421 SNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTVPPS 480

Query: 481 ILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSM 540
           I+     + ++ D  +     KTQF TKVVV DDCI++E E  PNVVGL   +S +++S+
Sbjct: 481 IIPQGRSETQSPDGKRN---LKTQFRTKVVVKDDCISVEAECTPNVVGLLKSSSCNLFSI 540

Query: 541 NRYGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHV 600
           N+Y CD+ADLPV IL QVASQ + WL EEA T G KA+R+FLSLS E+ +GE + LVAHV
Sbjct: 541 NKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEGERVSLVAHV 600

Query: 601 DPEDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLC 656
           +PED +GC+SWWLVM++   E+R       + V E RK LGHLSL+VL+S LMDL++LC
Sbjct: 601 NPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSVLMDLINLC 643

[Close]

BLAST of Lsi08G000690 vs. NCBI nr
Match: gi|449447591|ref|XP_004141551.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis sativus])

HSP 1 Score: 1258.0 bits (3254), Expect = 0.0e+00
Identity = 630/662 (95.17%), Postives = 644/662 (97.28%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKESSTPWQWQ+MIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVL+
Sbjct: 61  KKSSKESSTPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLA 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP
Sbjct: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCNV 240
           ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLP NSCHSLRFGFLSGCNV
Sbjct: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPPNSCHSLRFGFLSGCNV 240

Query: 241 ENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300
           ENPL+R KNESTN SNQSS+NREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVN+EA
Sbjct: 241 ENPLERDKNESTNPSNQSSVNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNQEA 300

Query: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSLD 360
           FNPS+GINVTGIRENYLQLSIDQGTSVFISLVPSGQS Q VEGAN+ IL+NA+LPFDSLD
Sbjct: 301 FNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSSQTVEGANSEILENASLPFDSLD 360

Query: 361 GIELLDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSNDGFG 420
           GIEL DRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQ SNDG G
Sbjct: 361 GIELPDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQVSNDGSG 420

Query: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHP 480
           LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVP SILHP
Sbjct: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPWSILHP 480

Query: 481 NSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNRYG 540
           NSI+ARTSD +QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYS NRY 
Sbjct: 481 NSIKARTSDGYQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSTNRYS 540

Query: 541 CDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600
           CDLADLPV ILLQVASQ ILWLHEEAL WGIKANRDFLSLSFELEQGETLRLVAHVDPED
Sbjct: 541 CDLADLPVIILLQVASQIILWLHEEALIWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600

Query: 601 PQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNGVGG 660
           PQGCLSWWLVMDD LMEDRKLNF++SDVVPEYRKFLGHLSLEVLHSTLMDLVSLC+GVGG
Sbjct: 601 PQGCLSWWLVMDDGLMEDRKLNFETSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCSGVGG 660

Query: 661 RL 663
            L
Sbjct: 661 SL 662

[Close]

BLAST of Lsi08G000690 vs. NCBI nr
Match: gi|659119352|ref|XP_008459609.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis melo])

HSP 1 Score: 1256.5 bits (3250), Expect = 0.0e+00
Identity = 626/662 (94.56%), Postives = 643/662 (97.13%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDED+KVSLDKLP+KRLEAIEENGLERFP+DVGYEEKRLSLIRRIDFAWAIEKDD+KKKQ
Sbjct: 1   MDEDLKVSLDKLPIKRLEAIEENGLERFPTDVGYEEKRLSLIRRIDFAWAIEKDDEKKKQ 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVL+
Sbjct: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLA 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP
Sbjct: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCNV 240
           ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLP NSCHSLRFGFLSGCNV
Sbjct: 181 ANEGFTIDLFDNSSCDPSSVFRPSSSTIRVDHDSSGMLAINLPPNSCHSLRFGFLSGCNV 240

Query: 241 ENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNREA 300
           ENPL+  KN++TN SNQ+S+ REKEFTNDDEYIKETNSLLRQVHHAIF EQVFDLVN EA
Sbjct: 241 ENPLEHDKNDTTNPSNQTSVKREKEFTNDDEYIKETNSLLRQVHHAIFCEQVFDLVNHEA 300

Query: 301 FNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSLD 360
           FNPS+GINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQ VEGAN+ ILDNANLPFDSLD
Sbjct: 301 FNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQTVEGANSEILDNANLPFDSLD 360

Query: 361 GIELLDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSNDGFG 420
           GIEL DRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQ SNDG G
Sbjct: 361 GIELPDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQVSNDGSG 420

Query: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHP 480
           LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHP
Sbjct: 421 LLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHP 480

Query: 481 NSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNRYG 540
           NSIQARTSDS+QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  NRY 
Sbjct: 481 NSIQARTSDSYQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYLTNRYS 540

Query: 541 CDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600
           CDLADLPV ILLQVASQ ILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDPED
Sbjct: 541 CDLADLPVIILLQVASQIILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDPED 600

Query: 601 PQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNGVGG 660
           PQGCLSWWLVMDD LMEDRKLNF++SDVVPEYRKFLG+LSLEVLHSTLMDLVSLC+GVGG
Sbjct: 601 PQGCLSWWLVMDDGLMEDRKLNFETSDVVPEYRKFLGNLSLEVLHSTLMDLVSLCSGVGG 660

Query: 661 RL 663
            L
Sbjct: 661 SL 662

[Close]

BLAST of Lsi08G000690 vs. NCBI nr
Match: gi|1009133312|ref|XP_015883833.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 903.3 bits (2333), Expect = 2.5e-259
Identity = 471/659 (71.47%), Postives = 537/659 (81.49%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDE +++SLDKLPVKRLE+IEENG ERFPSDVGY+EKRLSLIRRIDFAWA+EKDD KKKQ
Sbjct: 1   MDEKVQISLDKLPVKRLESIEENGAERFPSDVGYDEKRLSLIRRIDFAWAVEKDD-KKKQ 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKE+STPWQWQ M+ENLQLAHQELSVIIDLINTVE ND VTVA MTRPKPLPNEVLS
Sbjct: 61  KKSSKETSTPWQWQGMVENLQLAHQELSVIIDLINTVEENDGVTVASMTRPKPLPNEVLS 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DL VS ATKLQCFRHL KYFKQSAK LE+QVAREARFYGALIRLQQNWKVKRQRVA  + 
Sbjct: 121 DLAVSAATKLQCFRHLSKYFKQSAKALEQQVAREARFYGALIRLQQNWKVKRQRVAVSSS 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCN 240
            NEGFTIDLFDN+  DP+SVFRPSS S +RVDHD +GMLAINLP +SC SL+FGF+ G +
Sbjct: 181 GNEGFTIDLFDNTLHDPASVFRPSSLSMVRVDHDPAGMLAINLPPSSCRSLQFGFV-GAH 240

Query: 241 VENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNRE 300
             + ++  K +S +S    S   EKE  NDDE I+ET+SLLR+VH AIF EQVFDLVNRE
Sbjct: 241 PCDGIESSKTKSHHSQQDYSRETEKEPVNDDECIRETHSLLREVHQAIFDEQVFDLVNRE 300

Query: 301 AFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSL 360
           AFN SLG NVTGIRENYLQLSI Q  SVFISLVPSGQ  Q V GA TG L+NA LP D+L
Sbjct: 301 AFNQSLGANVTGIRENYLQLSIGQEYSVFISLVPSGQGDQTVNGAGTGDLENAILPLDTL 360

Query: 361 DGIELLDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLS-RQSGQGSNDG 420
           DG++L D      KK   PN I++EIYLQQIFH+ VFV++ D+P+SS +   SGQ + + 
Sbjct: 361 DGVKLPDEKPDTFKKSGIPNSISYEIYLQQIFHDHVFVRATDKPVSSSTPHLSGQSAKEH 420

Query: 421 FGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSIL 480
            GLLGHFC+SLAHR+F+N VLMELENVV  V +LQLISHPTW+SR SSWT  M +P SIL
Sbjct: 421 SGLLGHFCMSLAHRIFSNKVLMELENVVSGVQYLQLISHPTWHSRTSSWTLVMNIPESIL 480

Query: 481 HPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNR 540
           H    Q  TS+ +   NVTKT F TKVVV +DCI IEG+GAPNV+G F GN+++  SMNR
Sbjct: 481 HA-GCQNLTSELNHTKNVTKTLFRTKVVVINDCIHIEGKGAPNVIGPFKGNTQEKSSMNR 540

Query: 541 YGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDP 600
           Y CDLADLP+ IL QVASQ I WLHEEAL  GIK NRDFL LSFEL+QGET+ L+AHVDP
Sbjct: 541 YECDLADLPLIILQQVASQIIRWLHEEALMVGIKVNRDFLCLSFELDQGETVSLLAHVDP 600

Query: 601 EDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG 658
           ED QGC+SWWLVM+D L E+RKL+ D SD   EYRKFLG+LSL+VL+STLMDLVSLC+G
Sbjct: 601 EDAQGCISWWLVMEDGLAEERKLHMDISDGSSEYRKFLGYLSLDVLYSTLMDLVSLCSG 656

[Close]

BLAST of Lsi08G000690 vs. NCBI nr
Match: gi|1009170839|ref|XP_015866413.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 899.8 bits (2324), Expect = 2.8e-258
Identity = 470/659 (71.32%), Postives = 536/659 (81.34%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDE +++SLDKLPVKRLE+IEENG ERFPSDVGY+EKRLSLIRRIDFAWA+EKDD KKKQ
Sbjct: 1   MDEKVQISLDKLPVKRLESIEENGAERFPSDVGYDEKRLSLIRRIDFAWAVEKDD-KKKQ 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKE+STPWQWQ M+ENLQLAHQELSVIIDLINTVE ND VTVA MTRPKPLPNEVLS
Sbjct: 61  KKSSKETSTPWQWQGMVENLQLAHQELSVIIDLINTVEENDGVTVASMTRPKPLPNEVLS 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DL VS ATKLQCFRHL KYFKQSAK LE+QVAREARFYGALIRLQQNWKVKRQRVA  + 
Sbjct: 121 DLAVSAATKLQCFRHLSKYFKQSAKALEQQVAREARFYGALIRLQQNWKVKRQRVAVSSS 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCN 240
            NEGFTIDLFDN+  DP+SVFRPSS S +RVDHD +GMLAINLP +SC SL+FGF+ G +
Sbjct: 181 GNEGFTIDLFDNTLHDPASVFRPSSLSMVRVDHDPAGMLAINLPPSSCRSLQFGFV-GAH 240

Query: 241 VENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNRE 300
             + ++  K +S +S    S   EKE  NDDE I+ET+SLLR+VH AIF EQVFDLVNRE
Sbjct: 241 PCDGIESSKMKSHHSQQDYSRETEKEPVNDDECIRETHSLLREVHQAIFDEQVFDLVNRE 300

Query: 301 AFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSL 360
           AFN SLG NVTGIRENYLQLSI Q  SVFISLVPSGQ  Q V GA T  L+NA LP D+L
Sbjct: 301 AFNQSLGANVTGIRENYLQLSIGQEYSVFISLVPSGQGDQTVNGAGTDDLENAILPLDTL 360

Query: 361 DGIELLDRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLS-RQSGQGSNDG 420
           DG++L D      KK   PN I++EIYLQQIFH+ VFV++ D+P+SS +   SGQ + + 
Sbjct: 361 DGVKLPDEKPDTFKKSGIPNSISYEIYLQQIFHDHVFVRATDKPVSSSTPHLSGQSAKEH 420

Query: 421 FGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSIL 480
            GLLGHFC+SLAHR+F+N VLMELENVV  V +LQLISHPTW+SR SSWT  M +P SIL
Sbjct: 421 SGLLGHFCMSLAHRIFSNKVLMELENVVSGVQYLQLISHPTWHSRTSSWTLVMNIPESIL 480

Query: 481 HPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNR 540
           H    Q  TS+ +   NVTKT F TKVVV +DCI IEG+GAPNV+G F GN+++  SMNR
Sbjct: 481 HA-GCQNLTSELNHTKNVTKTLFRTKVVVINDCIHIEGKGAPNVIGPFKGNTQEKSSMNR 540

Query: 541 YGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDP 600
           Y CDLADLP+ IL QVASQ I WLHEEAL  GIK NRDFL LSFEL+QGET+ L+AHVDP
Sbjct: 541 YECDLADLPLIILQQVASQIIRWLHEEALMVGIKVNRDFLCLSFELDQGETVSLLAHVDP 600

Query: 601 EDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG 658
           ED QGC+SWWLVM+D L E+RKL+ D SD   EYRKFLG+LSL+VL+STLMDLVSLC+G
Sbjct: 601 EDAQGCISWWLVMEDGLAEERKLHMDISDGSSEYRKFLGYLSLDVLYSTLMDLVSLCSG 656

[Close]

BLAST of Lsi08G000690 vs. NCBI nr
Match: gi|595820121|ref|XP_007204608.1| (hypothetical protein PRUPE_ppa002594mg [Prunus persica])

HSP 1 Score: 893.6 bits (2308), Expect = 2.0e-256
Identity = 462/661 (69.89%), Postives = 539/661 (81.54%), Query Frame = 1


Query: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MD  M++SLDKLP+KRL+ IEENGLERFP DVGYEEKR SLIRRIDFAWA+EKD++KK++
Sbjct: 1   MDGKMEISLDKLPIKRLDVIEENGLERFPPDVGYEEKRQSLIRRIDFAWAVEKDENKKQK 60

Query: 61  KKSSKESSTPWQWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           K S + ++T WQWQ+M+ENLQLAHQELSVIIDLINTVE NDAVTVA MTRPKP  +EV+S
Sbjct: 61  KSSKESAATQWQWQSMVENLQLAHQELSVIIDLINTVETNDAVTVASMTRPKPFHDEVMS 120

Query: 121 DLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVAAPAP 180
           DL VS ATKLQCFRHLGKYFKQSAK LERQVAREARFYGALIRLQQNWKVKRQRVAA A 
Sbjct: 121 DLAVSAATKLQCFRHLGKYFKQSAKALERQVAREARFYGALIRLQQNWKVKRQRVAASAS 180

Query: 181 ANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPTNSCHSLRFGFLSGCN 240
            NEGFTIDLFD+S  DP+++FRPSS ST+RVDHDS+GMLAINLP NS  SL+FGFL    
Sbjct: 181 GNEGFTIDLFDSSLYDPAAIFRPSSLSTVRVDHDSAGMLAINLPPNSYRSLQFGFLGADP 240

Query: 241 VENPLDRGKNESTNSSNQSSMNREKEFTNDDEYIKETNSLLRQVHHAIFSEQVFDLVNRE 300
             +P+     ES+ +  + S   EKE  +DDE +KET+SLLR+VH AIF EQVFDLVNRE
Sbjct: 241 GVSPI-----ESSQTKIRLSSEAEKESVSDDECVKETHSLLREVHQAIFDEQVFDLVNRE 300

Query: 301 AFNPSLGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQAVEGANTGILDNANLPFDSL 360
           AFN SLG+NVTGI+ENYLQL+I QGTSVFISLVPS +  Q V+  +T  L+N  LP D+L
Sbjct: 301 AFNQSLGVNVTGIQENYLQLNIGQGTSVFISLVPS-RGEQTVDSPSTQNLENTILPLDTL 360

Query: 361 DGIELL-DRSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQSGQGSNDG 420
           DG+EL  D+ D ++K    P+ I+ EIYLQQIFH+ VFVK+ DRP S+ +R SGQ + +G
Sbjct: 361 DGLELAEDKPDTVKKTSLIPDQISCEIYLQQIFHQHVFVKAKDRPTSAGARVSGQLAKEG 420

Query: 421 FGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSIL 480
            GLLGHFC+SLAHR+F+N VL ELENVV  VP+LQL+SHPTW+SR SSW  F+++P SIL
Sbjct: 421 PGLLGHFCMSLAHRIFSNKVLKELENVVKGVPYLQLLSHPTWHSRTSSWMLFVKIPESIL 480

Query: 481 HPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNR 540
           H  + Q RTSD   M N+TK+QF TKVVV DDCI +EGEGAPNVVGLF GNS++I  MNR
Sbjct: 481 H--ACQTRTSDMRHMRNITKSQFHTKVVVTDDCINVEGEGAPNVVGLFKGNSEEICLMNR 540

Query: 541 YGCDLADLPVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETLRLVAHVDP 600
           Y CDLADLPV IL QVASQ I WLHEEAL  GIKANRDFL LSFEL+ GETL LVAHVDP
Sbjct: 541 YDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLCLSFELDLGETLSLVAHVDP 600

Query: 601 EDPQGCLSWWLVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNGV 660
           ED +GC+SWWLV++   +E+RKL+ D+SD   E RKFLGHLSLEVL+STLMDLVSLC G 
Sbjct: 601 EDGEGCISWWLVINGGFVEERKLSMDASDGASESRKFLGHLSLEVLYSTLMDLVSLCTGR 653

The following BLAST results are available for this feature:

BLAST of Lsi08G000690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED17_ARATH	2.6e-211	58.27	Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana G...	[more]

BLAST of Lsi08G000690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXX2_CUCSA	0.0e+00	95.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650410 PE=4 SV=1	[more]
M5VWL4_PRUPE	1.4e-256	69.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002594mg PE=4 SV=1	[more]
A5BHH4_VITVI	3.8e-254	68.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05020 PE=4 SV=...	[more]
A0A067K814_JATCU	2.8e-249	68.42	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13306 PE=4 SV=1	[more]
W9RGP1_9ROSA	4.1e-248	68.60	Uncharacterized protein OS=Morus notabilis GN=L484_006289 PE=4 SV=1	[more]

BLAST of Lsi08G000690 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20170.1	1.5e-212	58.27	RNA polymerase II transcription mediators	[more]

BLAST of Lsi08G000690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447591\|ref\|XP_004141551.1\|	0.0e+00	95.17	PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis sativ...	[more]
gi\|659119352\|ref\|XP_008459609.1\|	0.0e+00	94.56	PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis melo]	[more]
gi\|1009133312\|ref\|XP_015883833.1\|	2.5e-259	71.47	PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X...	[more]
gi\|1009170839\|ref\|XP_015866413.1\|	2.8e-258	71.32	PREDICTED: mediator of RNA polymerase II transcription subunit 17 isoform X1 [Zi...	[more]
gi\|595820121\|ref\|XP_007204608.1\|	2.0e-256	69.89	hypothetical protein PRUPE_ppa002594mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR019313	Mediator_Med17

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G000690.1	Lsi08G000690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019313	Mediator complex, subunit Med17	PFAM	PF10156	Med17	coord: 54..332 score: 2.
None	No IPR available	PANTHER	PTHR13114	TRANSCRIPTIONAL CO-ACTIVATOR CRSP77-RELATED	coord: 1..662 score: 4.6E
None	No IPR available	PANTHER	PTHR13114:SF7	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17	coord: 1..662 score: 4.6E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G000690	Cucumber (Gy14) v1	cgylsiB389
Lsi08G000690	Cucurbita maxima (Rimu)	cmalsiB033
Lsi08G000690	Cucurbita maxima (Rimu)	cmalsiB453
Lsi08G000690	Cucurbita moschata (Rifu)	cmolsiB025
Lsi08G000690	Cucurbita moschata (Rifu)	cmolsiB440
Lsi08G000690	Cucurbita pepo (Zucchini)	cpelsiB479
Lsi08G000690	Cucurbita pepo (Zucchini)	cpelsiB650
Lsi08G000690	Wild cucumber (PI 183967)	cpilsiB395
Lsi08G000690	Cucumber (Chinese Long) v2	culsiB391
Lsi08G000690	Melon (DHL92) v3.5.1	lsimeB461
Lsi08G000690	Watermelon (Charleston Gray)	lsiwcgB440
Lsi08G000690	Watermelon (97103) v1	lsiwmB467
Lsi08G000690	Cucumber (Gy14) v2	cgyblsiB358
Lsi08G000690	Melon (DHL92) v3.6.1	lsimedB479
Lsi08G000690	Melon (DHL92) v3.6.1	lsimedB480
Lsi08G000690	Cucumber (Chinese Long) v3	cuclsiB414
Lsi08G000690	Cucumber (Chinese Long) v3	cuclsiB415
Lsi08G000690	Watermelon (97103) v2	lsiwmbB445
Lsi08G000690	Wax gourd	lsiwgoB589