Lsi07G011880 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G011880
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionGlycine-rich protein-2
Locationchr07 : 17420243 .. 17421025 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATCTTTAGAACTTTGTCTTTTGGTTTTCTTTTGCTCGTGAGTTTAGGCTTAGCTTCGGCTACTAGAACTCTTCTTTCTTATGATATTCCTCCACATCGATCTGAATATGGCCATAATGAACATAATGACTATCCTGTGCATAACCCAAAAGTAGGATACGAACGTGACCATCATGATGGACCTTATGGTAGTGGTGCTGGTGGAGGATATGGAGGTGGAGCTGGCTCATCTCTTGGAGGCTCTGGATATGGAAGTGGCGGAGGTGGAGGTGGTGGTTCTGGATATACAGGTGTAGGAGATCATGGGGCTGGTTATGGTAGTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGTGGATATGGAAGCGGTGGCGGCGGAGGAAGTGGTGGAGGATATGGTGATCTAGGAGGACATGGAAAAGGCTATGGTAGCGGTGGTGGCGGAGGAAGTGGATATGGAAGCAGAGGAGACCATGGAGTTAGTTATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGGTGGTGCAGGATATGGTCCAGGAGGAGACCACGGTGTAGGTTATGGAAGTGGAGGAGGAGGTGGGTCTGGTAGTGGTTATGGTGGTTCCAAAGGATATGGAGGTGGAAGCGGTGGTGGTGGCGGAGCAGGTTATGGTGGTGGAGCACATGGAAGTGGATATGGAAGTGGTGGTGGAGCTGGAAGTGGCTACGGCGGCAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

mRNA sequence

ATGGCTATCTTTAGAACTTTGTCTTTTGGTTTTCTTTTGCTCGTGAGTTTAGGCTTAGCTTCGGCTACTAGAACTCTTCTTTCTTATGATATTCCTCCACATCGATCTGAATATGGCCATAATGAACATAATGACTATCCTGTGCATAACCCAAAAGTAGGATACGAACGTGACCATCATGATGGACCTTATGGTAGTGGTGCTGGTGGAGGATATGGAGGTGGAGCTGGCTCATCTCTTGGAGGCTCTGGATATGGAAGTGGCGGAGGTGGAGGTGGTGGTTCTGGATATACAGGTGTAGGAGATCATGGGGCTGGTTATGGTAGTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGTGGATATGGAAGCGGTGGCGGCGGAGGAAGTGGTGGAGGATATGGTGATCTAGGAGGACATGGAAAAGGCTATGGTAGCGGTGGTGGCGGAGGAAGTGGATATGGAAGCAGAGGAGACCATGGAGTTAGTTATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGGTGGTGCAGGATATGGTCCAGGAGGAGACCACGGTGTAGGTTATGGAAGTGGAGGAGGAGGTGGGTCTGGTAGTGGTTATGGTGGTTCCAAAGGATATGGAGGTGGAAGCGGTGGTGGTGGCGGAGCAGGTTATGGTGGTGGAGCACATGGAAGTGGATATGGAAGTGGTGGTGGAGCTGGAAGTGGCTACGGCGGCAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

Coding sequence (CDS)

ATGGCTATCTTTAGAACTTTGTCTTTTGGTTTTCTTTTGCTCGTGAGTTTAGGCTTAGCTTCGGCTACTAGAACTCTTCTTTCTTATGATATTCCTCCACATCGATCTGAATATGGCCATAATGAACATAATGACTATCCTGTGCATAACCCAAAAGTAGGATACGAACGTGACCATCATGATGGACCTTATGGTAGTGGTGCTGGTGGAGGATATGGAGGTGGAGCTGGCTCATCTCTTGGAGGCTCTGGATATGGAAGTGGCGGAGGTGGAGGTGGTGGTTCTGGATATACAGGTGTAGGAGATCATGGGGCTGGTTATGGTAGTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGTGGATATGGAAGCGGTGGCGGCGGAGGAAGTGGTGGAGGATATGGTGATCTAGGAGGACATGGAAAAGGCTATGGTAGCGGTGGTGGCGGAGGAAGTGGATATGGAAGCAGAGGAGACCATGGAGTTAGTTATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGGTGGTGCAGGATATGGTCCAGGAGGAGACCACGGTGTAGGTTATGGAAGTGGAGGAGGAGGTGGGTCTGGTAGTGGTTATGGTGGTTCCAAAGGATATGGAGGTGGAAGCGGTGGTGGTGGCGGAGCAGGTTATGGTGGTGGAGCACATGGAAGTGGATATGGAAGTGGTGGTGGAGCTGGAAGTGGCTACGGCGGCAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

Protein sequence

MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYGHNEHNDYPVHNPKVGYERDHHDGPYGSGAGGGYGGGAGSSLGGSGYGSGGGGGGGSGYTGVGDHGAGYGSGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGSRGDHGVSYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGAGYGGGAHGSGYGSGGGAGSGYGGSGEEGGYDGGYAP
Homology
[Close]
BLAST of Lsi07G011880 vs. Swiss-Prot
Match: GRP2_PHAVU (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-07
Identity = 109/194 (56.19%), Postives = 117/194 (60.31%), Query Frame = 1 

Query: 62  GPYGSGAGGGYGGGAGSSLGGSGYGSGGGGGG-----GSGYTGVGDHGAGYGSGGGGGYG 121
           G +G GAGGG GGGAG   G  G   GGGGGG     G GY  VG+HG GYG G GGG G
Sbjct: 291 GEHGGGAGGGQGGGAGGGYGAGGEHGGGGGGGQGGGAGGGYAAVGEHGGGYGGGQGGGDG 350

Query: 122 AGVGSD-LGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGSRGDHGVS-YGSGG 181
            G G+    G GYG G GGG+GGGYG  G HG GYG G GGG GYG+ GDHG + YG G 
Sbjct: 351 GGYGTGGEHGGGYGGGQGGGAGGGYGTGGEHGGGYGGGQGGGGGYGAGGDHGAAGYGGGE 410

Query: 182 GGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGAGYGGGAHGSG 241
           GGG GSGGG  YG GG HG GY  GGG G G GYG                  GGAHG G
Sbjct: 411 GGGGGSGGG--YGDGGAHGGGY--GGGAGGGGGYG-----------------AGGAHGGG 463

Query: 242 YGSGGGAGSGYGGS 249
           YG GGG G G+GG+
Sbjct: 471 YGGGGGIGGGHGGN 463

[Close]
BLAST of Lsi07G011880 vs. TrEMBL
Match: A0A0A0L1U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.1e-68
Identity = 223/272 (81.99%), Postives = 230/272 (84.56%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYGHNEHNDYPVHNPKVGYE---- 60
           MAI +TLSFGFLLLVSLGLASA R+LLSYDIPPHRS Y   ++ D+PV NPKVGYE    
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGY---DNYDHPVVNPKVGYEHDRR 60

Query: 61  ------RDHHDGPYGSGAGGGYGGGAG--SSLGGSGYGSGGGGGGGSGYTGVGDHGAGYG 120
                 RDHHD PYG GAGGGYG GAG  SSLGGSGYGSGGGGG  SGY GVG+H  GYG
Sbjct: 61  DGYYHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGG--SGYGGVGNHEVGYG 120

Query: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGSRGDHGV 180
           SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGG GKGYGSGGGGGSGYG RGDHGV
Sbjct: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGV 180

Query: 181 SYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGAGYGG 240
            YGSGGGGGYGSG G G G   DHGVGYGSGGGGG+GSGYGGSKGYGGGSGGGGGAGYGG
Sbjct: 181 GYGSGGGGGYGSGVGGGAGV-VDHGVGYGSGGGGGAGSGYGGSKGYGGGSGGGGGAGYGG 240

Query: 241 GAHGSGYGSGGGAGSGYGGSGEEGGYDGGYAP 261
           GAHGSGYGSGGGA     GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGGA-----GSGEEGGYDGGYAP 261

[Close]
BLAST of Lsi07G011880 vs. TrEMBL
Match: Q9ZWM2_CUCSA (Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.5e-68
Identity = 222/272 (81.62%), Postives = 230/272 (84.56%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYGHNEHNDYPVHNPKVGYE---- 60
           MAI +TLSFGFLLLVSLGLASA R+LLSYDIPPHRS Y   ++ D+PV NPKVGYE    
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGY---DNYDHPVVNPKVGYEHDRR 60

Query: 61  ------RDHHDGPYGSGAGGGYGGGAG--SSLGGSGYGSGGGGGGGSGYTGVGDHGAGYG 120
                 RDHHD PYG GAGGGYG GAG  SSLGGSGYGSGGGGG  SGY GVG+H  GYG
Sbjct: 61  DGYYHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGG--SGYGGVGNHEVGYG 120

Query: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGSRGDHGV 180
           SGGGGGYGAGVGSDLGGSGYGSGGGGG+GGGYGDLGG GKGYGSGGGGGSGYG RGDHGV
Sbjct: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGV 180

Query: 181 SYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGAGYGG 240
            YGSGGGGGYGSG G G G   DHGVGYGSGGGGG+GSGYGGSKGYGGGSGGGGGAGYGG
Sbjct: 181 GYGSGGGGGYGSGVGGGAGV-VDHGVGYGSGGGGGAGSGYGGSKGYGGGSGGGGGAGYGG 240

Query: 241 GAHGSGYGSGGGAGSGYGGSGEEGGYDGGYAP 261
           GAHGSGYGSGGGA     GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGGA-----GSGEEGGYDGGYAP 261

[Close]
BLAST of Lsi07G011880 vs. TrEMBL
Match: A0A0A0L3Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.7e-36
Identity = 172/293 (58.70%), Postives = 179/293 (61.09%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYG-HN-------EHNDYPVHNPK 60
           MAIFRT SFGFLLLVSLGLASATR+LL+YD PPH S Y  HN       +H+D P     
Sbjct: 10  MAIFRTFSFGFLLLVSLGLASATRSLLTYD-PPHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  ----------------VGYERDHHDG-------PYGSGAGGGYGGGAGSSLGGSGYGSGG 120
                           VGYE DHHDG        YG  AGGGYG GAGSSLGGSGYG+  
Sbjct: 70  GASGGYGAGAGSGYGGVGYEHDHHDGYERDHDRSYGGSAGGGYGVGAGSSLGGSGYGNV- 129

Query: 121 GGGGGSGYTGVGDHGAGYGSGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKG 180
                       DHG GY +GG GGYGAGVGSDLGGSGYGSG GG SG G GDLGG GKG
Sbjct: 130 ------------DHGVGYSNGGSGGYGAGVGSDLGGSGYGSGNGGASGSGNGDLGGRGKG 189

Query: 181 YGSGGGGGSGYGSRGDHGVSYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYG 240
           YG GG GG+GYG RGDHG   G                   D  V             YG
Sbjct: 190 YGRGGVGGNGYGGRGDHGRVVGH------------------DDVV-------------YG 249

Query: 241 GSKGYGGGSGGGGGAGYGGGAHGSGYGSGGGA--GSGYGGSGEEGGYDGGYAP 261
           GSKGYGGGSG GGGAGY GGA GSGYGSGGGA  GSGYGGSGEEGGYDGGYAP
Sbjct: 250 GSKGYGGGSGVGGGAGYSGGASGSGYGSGGGAGSGSGYGGSGEEGGYDGGYAP 257

[Close]
BLAST of Lsi07G011880 vs. TrEMBL
Match: Q9ZWM3_CUCSA (Glycine-rich protein-1 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.2e-19
Identity = 94/165 (56.97%), Postives = 100/165 (60.61%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYG-HN-------EHNDYPVHNPK 60
           MAIFRT SFGFLLLVSLGLASATR+LL+YD PPH S Y  HN       +H+D P     
Sbjct: 10  MAIFRTFSFGFLLLVSLGLASATRSLLTYD-PPHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  ----------------VGYERDHHDG-------PYGSGAGGGYGGGAGSSLGGSGYGSGG 120
                           VGYE DHHDG        YG  AGGGYG GAGSSLGGSGYG+  
Sbjct: 70  GASGGYGAGAGSGYGGVGYEHDHHDGYERDHDRSYGGSAGGGYGVGAGSSLGGSGYGNV- 129

Query: 121 GGGGGSGYTGVGDHGAGYGSGGGGGYGAGVGSDLGGSGYGSGGGG 135
                       DHG GY +GG GGYGAGVGSDLGGSGYGSG GG
Sbjct: 130 ------------DHGVGYSNGGSGGYGAGVGSDLGGSGYGSGNGG 160

[Close]
BLAST of Lsi07G011880 vs. TrEMBL
Match: W1NU74_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00219320 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 157/274 (57.30%), Postives = 168/274 (61.31%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYGHNEHNDYPVHNPKVGYERDHH 60
           MA    LS  FL+L+ LGL SA+R LL          YG+                    
Sbjct: 1   MAKHSCLSAAFLVLLGLGLCSASRVLLG--------GYGY-------------------- 60

Query: 61  DGPYGSGAGGGYGGGAGSSLG--GSGYGSGGGGGGGSGYTGVGDHGAGYGSGGGGGYGAG 120
           +G  G G GGG G G GS  G  G GYGSGGGG  G+GY   GDHGAGYGSGGGGG GAG
Sbjct: 61  EGGAGYGVGGGSGSGMGSVEGEHGVGYGSGGGGASGAGYGAGGDHGAGYGSGGGGGSGAG 120

Query: 121 VGSDLG-GSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSG--YGSRGDHGVSYGSGGG 180
            G+    G GYGSGGG G G GYG  G HG GYGSGGGGGSG  YG+ G+HG  YGSGGG
Sbjct: 121 YGAGGDHGVGYGSGGGSGGGAGYGAGGEHGGGYGSGGGGGSGSGYGAGGEHGGGYGSGGG 180

Query: 181 GGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGG----SKGYGGGSGGGGGAGYG-GGA 240
               SGGGAGYG GG+HG GYGSGGGGGSGSGYG       GYG G G GGG GYG GG 
Sbjct: 181 ----SGGGAGYGAGGEHGGGYGSGGGGGSGSGYGAGGEHGGGYGSGGGSGGGGGYGAGGE 240

Query: 241 HGSGYGS----GGGAGSGYGGSGEE-GGYDGGYA 260
           HG GYGS    GGG+GSGYG  G   GGY GG A
Sbjct: 241 HGGGYGSGGGGGGGSGSGYGAGGAAGGGYGGGSA 242

[Close]
BLAST of Lsi07G011880 vs. TAIR10
Match: AT5G46730.1 (AT5G46730.1 glycine-rich protein)

HSP 1 Score: 48.5 bits (114), Expect = 7.1e-06
Identity = 115/197 (58.38%), Postives = 121/197 (61.42%), Query Frame = 1 

Query: 65  GSGAGGGYGGGAGSSLGGSGYGSGGGGGGGSGYTGVGDHGAGYGSGGGGGYGAGVGSDLG 124
           G G GGGYGG AG   GG G GSGGGGG  S Y   G+H +GYG+G G G GAG  S  G
Sbjct: 105 GEGGGGGYGGAAGGHAGGGGGGSGGGGG--SAYGAGGEHASGYGNGAGEGGGAGA-SGYG 164

Query: 125 GSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGSRGDHGVSYGSGGGGGYGSGGGA 184
           G  YG GGG G GGG G  GG   G G GGG G G G  G HG + G GGGGG GSGGG 
Sbjct: 165 GGAYGGGGGHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHGGAGGYGGGGGGGSGGGG 224

Query: 185 GYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGG-GGAGYGGGAHGSGYGSGGGAGS 244
            YG GG HG GYGSGGG G G G G + GYGGG GGG GG G  GG HG G G G G G 
Sbjct: 225 AYGGGGAHGGGYGSGGGEGGGYGGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGG 284

Query: 245 GYGGSGEEGGYDGGYAP 261
           G+GG        GGYAP
Sbjct: 285 GHGG--------GGYAP 290

[Close]
BLAST of Lsi07G011880 vs. NCBI nr
Match: gi|659095612|ref|XP_008448673.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 6.6e-70
Identity = 223/272 (81.99%), Postives = 234/272 (86.03%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYGHNEHNDYPVHNPKVGYERDHH 60
           MAI +TLSFGFLLLVSLGLASA R+LL YD+PPHRS Y +N ++++PV NPKVGYE DHH
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLYYDMPPHRSGYDNN-YDNHPVVNPKVGYEHDHH 60

Query: 61  DG----------PYGSGAGGGYG--GGAGSSLGGSGYGSGGGGGGGSGYTGVGDHGAGYG 120
           DG          PYG GAGGGYG  GGAGSSLGGSGYGSGGGGG  SGY GVG+HG GYG
Sbjct: 61  DGYYHDRDHHDAPYGGGAGGGYGAGGGAGSSLGGSGYGSGGGGG--SGYGGVGNHGVGYG 120

Query: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGSRGDHGV 180
           SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYG RGDHGV
Sbjct: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGV 180

Query: 181 SYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGAGYGG 240
            YGSGGGGGYGSG G   G G DHGVGYGSGGGGG+G GYGGSKGYG GSGGGGGAGYGG
Sbjct: 181 GYGSGGGGGYGSGVG---GAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGG 240

Query: 241 GAHGSGYGSGGGAGSGYGGSGEEGGYDGGYAP 261
           GAHGSGYGSGGGAG+   GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGGAGA---GSGEEGGYDGGYAP 263

[Close]
BLAST of Lsi07G011880 vs. NCBI nr
Match: gi|778675041|ref|XP_011650342.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 1.6e-68
Identity = 223/272 (81.99%), Postives = 230/272 (84.56%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYGHNEHNDYPVHNPKVGYE---- 60
           MAI +TLSFGFLLLVSLGLASA R+LLSYDIPPHRS Y   ++ D+PV NPKVGYE    
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGY---DNYDHPVVNPKVGYEHDRR 60

Query: 61  ------RDHHDGPYGSGAGGGYGGGAG--SSLGGSGYGSGGGGGGGSGYTGVGDHGAGYG 120
                 RDHHD PYG GAGGGYG GAG  SSLGGSGYGSGGGGG  SGY GVG+H  GYG
Sbjct: 61  DGYYHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGG--SGYGGVGNHEVGYG 120

Query: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGSRGDHGV 180
           SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGG GKGYGSGGGGGSGYG RGDHGV
Sbjct: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGV 180

Query: 181 SYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGAGYGG 240
            YGSGGGGGYGSG G G G   DHGVGYGSGGGGG+GSGYGGSKGYGGGSGGGGGAGYGG
Sbjct: 181 GYGSGGGGGYGSGVGGGAGV-VDHGVGYGSGGGGGAGSGYGGSKGYGGGSGGGGGAGYGG 240

Query: 241 GAHGSGYGSGGGAGSGYGGSGEEGGYDGGYAP 261
           GAHGSGYGSGGGA     GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGGA-----GSGEEGGYDGGYAP 261

[Close]
BLAST of Lsi07G011880 vs. NCBI nr
Match: gi|3810890|dbj|BAA34064.1| (glycine-rich protein-2 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 3.6e-68
Identity = 222/272 (81.62%), Postives = 230/272 (84.56%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYGHNEHNDYPVHNPKVGYE---- 60
           MAI +TLSFGFLLLVSLGLASA R+LLSYDIPPHRS Y   ++ D+PV NPKVGYE    
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGY---DNYDHPVVNPKVGYEHDRR 60

Query: 61  ------RDHHDGPYGSGAGGGYGGGAG--SSLGGSGYGSGGGGGGGSGYTGVGDHGAGYG 120
                 RDHHD PYG GAGGGYG GAG  SSLGGSGYGSGGGGG  SGY GVG+H  GYG
Sbjct: 61  DGYYHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGG--SGYGGVGNHEVGYG 120

Query: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGSRGDHGV 180
           SGGGGGYGAGVGSDLGGSGYGSGGGGG+GGGYGDLGG GKGYGSGGGGGSGYG RGDHGV
Sbjct: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGV 180

Query: 181 SYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGAGYGG 240
            YGSGGGGGYGSG G G G   DHGVGYGSGGGGG+GSGYGGSKGYGGGSGGGGGAGYGG
Sbjct: 181 GYGSGGGGGYGSGVGGGAGV-VDHGVGYGSGGGGGAGSGYGGSKGYGGGSGGGGGAGYGG 240

Query: 241 GAHGSGYGSGGGAGSGYGGSGEEGGYDGGYAP 261
           GAHGSGYGSGGGA     GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGGA-----GSGEEGGYDGGYAP 261

[Close]
BLAST of Lsi07G011880 vs. NCBI nr
Match: gi|659095614|ref|XP_008448674.1| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 4.2e-40
Identity = 174/290 (60.00%), Postives = 186/290 (64.14%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYG-HN-------EHNDYPV---- 60
           MAI RTLSFGFLLLVSLGLASATR+LL+YD PPH+S Y  HN       + +D P     
Sbjct: 10  MAISRTLSFGFLLLVSLGLASATRSLLTYD-PPHQSGYDDHNTKVGYGRDRHDEPYGGGA 69

Query: 61  ------------------HNPKVGYERDHHDGPYGSGAGGGYGGGAGSSLGGSGYGSGGG 120
                             H+   GY+RDHHD  YG GAGGGYG GAGSSLGGSGYG+   
Sbjct: 70  GGGYGAGAGSGYGSVGHDHDHHDGYDRDHHDRSYGGGAGGGYGAGAGSSLGGSGYGN--- 129

Query: 121 GGGGSGYTGVGDHGAGYGSGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGY 180
                    VGDHG GYGSGG GGYGAGVGSDLGGSGYGSG GGGSGGGYGD+G  GKGY
Sbjct: 130 ---------VGDHGVGYGSGGSGGYGAGVGSDLGGSGYGSGNGGGSGGGYGDVGSRGKGY 189

Query: 181 GSGGGGGSGYGSRGDHGVSYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGG 240
           G GG GGSGYG RGD+G                   G G D  V             YGG
Sbjct: 190 GRGGVGGSGYGGRGDYG------------------RGVGHDDVV-------------YGG 249

Query: 241 SKGYGGGSGGGGGAGYGGGAHGSGYGSGGGAGSGYGGSGEEGGYDGGYAP 261
           SKGYGGGSG GGGAGY GGAHGSG G+G G+GSGYGGSGEEGGYDGGYAP
Sbjct: 250 SKGYGGGSGVGGGAGYSGGAHGSGGGAGSGSGSGYGGSGEEGGYDGGYAP 255

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BLAST of Lsi07G011880 vs. NCBI nr
Match: gi|778688288|ref|XP_011652710.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 172/293 (58.70%), Postives = 179/293 (61.09%), Query Frame = 1 

Query: 1   MAIFRTLSFGFLLLVSLGLASATRTLLSYDIPPHRSEYG-HN-------EHNDYPVHNPK 60
           MAIFRT SFGFLLLVSLGLASATR+LL+YD PPH S Y  HN       +H+D P     
Sbjct: 10  MAIFRTFSFGFLLLVSLGLASATRSLLTYD-PPHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  ----------------VGYERDHHDG-------PYGSGAGGGYGGGAGSSLGGSGYGSGG 120
                           VGYE DHHDG        YG  AGGGYG GAGSSLGGSGYG+  
Sbjct: 70  GASGGYGAGAGSGYGGVGYEHDHHDGYERDHDRSYGGSAGGGYGVGAGSSLGGSGYGNV- 129

Query: 121 GGGGGSGYTGVGDHGAGYGSGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKG 180
                       DHG GY +GG GGYGAGVGSDLGGSGYGSG GG SG G GDLGG GKG
Sbjct: 130 ------------DHGVGYSNGGSGGYGAGVGSDLGGSGYGSGNGGASGSGNGDLGGRGKG 189

Query: 181 YGSGGGGGSGYGSRGDHGVSYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYG 240
           YG GG GG+GYG RGDHG   G                   D  V             YG
Sbjct: 190 YGRGGVGGNGYGGRGDHGRVVGH------------------DDVV-------------YG 249

Query: 241 GSKGYGGGSGGGGGAGYGGGAHGSGYGSGGGA--GSGYGGSGEEGGYDGGYAP 261
           GSKGYGGGSG GGGAGY GGA GSGYGSGGGA  GSGYGGSGEEGGYDGGYAP
Sbjct: 250 GSKGYGGGSGVGGGAGYSGGASGSGYGSGGGAGSGSGYGGSGEEGGYDGGYAP 257

The following BLAST results are available for this feature:
BLAST of Lsi07G011880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GRP2_PHAVU3.6e-0756.19Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris PE=2 SV=1[more]
BLAST of Lsi07G011880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1U7_CUCSA1.1e-6881.99Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1[more]
Q9ZWM2_CUCSA2.5e-6881.62Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1[more]
A0A0A0L3Y0_CUCSA9.7e-3658.70Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1[more]
Q9ZWM3_CUCSA8.2e-1956.97Glycine-rich protein-1 OS=Cucumis sativus PE=2 SV=1[more]
W1NU74_AMBTC3.2e-1557.30Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00219320 PE=4 SV=... [more]
BLAST of Lsi07G011880 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46730.17.1e-0658.38 glycine-rich protein[more]
BLAST of Lsi07G011880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095612|ref|XP_008448673.1|6.6e-7081.99PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]
gi|778675041|ref|XP_011650342.1|1.6e-6881.99PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus][more]
gi|3810890|dbj|BAA34064.1|3.6e-6881.62glycine-rich protein-2 [Cucumis sativus][more]
gi|659095614|ref|XP_008448674.1|4.2e-4060.00PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo][more]
gi|778688288|ref|XP_011652710.1|1.4e-3558.70PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G011880.1Lsi07G011880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 6..22
score: 8.5E-8coord: 101..116
score: 8.5E-8coord: 173..191
score: 8.5E-8coord: 128..138
score: 8.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G011880Cla97C10G186150Watermelon (97103) v2lsiwmbB395
Lsi07G011880Bhi11G000020Wax gourdlsiwgoB537
Lsi07G011880CsaV3_3G001620Cucumber (Chinese Long) v3cuclsiB250
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G011880Bottle gourd (USVL1VR-Ls)lsilsiB000
Lsi07G011880Cucumber (Gy14) v1cgylsiB510
Lsi07G011880Cucumber (Gy14) v1cgylsiB530
Lsi07G011880Cucurbita maxima (Rimu)cmalsiB324
Lsi07G011880Cucurbita maxima (Rimu)cmalsiB496
Lsi07G011880Cucurbita maxima (Rimu)cmalsiB591
Lsi07G011880Cucurbita maxima (Rimu)cmalsiB772
Lsi07G011880Cucurbita moschata (Rifu)cmolsiB313
Lsi07G011880Cucurbita moschata (Rifu)cmolsiB481
Lsi07G011880Cucurbita moschata (Rifu)cmolsiB574
Lsi07G011880Cucurbita moschata (Rifu)cmolsiB763
Lsi07G011880Cucurbita pepo (Zucchini)cpelsiB183
Lsi07G011880Cucurbita pepo (Zucchini)cpelsiB218
Lsi07G011880Cucurbita pepo (Zucchini)cpelsiB630
Lsi07G011880Cucurbita pepo (Zucchini)cpelsiB725
Lsi07G011880Wild cucumber (PI 183967)cpilsiB227
Lsi07G011880Wild cucumber (PI 183967)cpilsiB228
Lsi07G011880Cucumber (Chinese Long) v2culsiB228
Lsi07G011880Cucumber (Chinese Long) v2culsiB229
Lsi07G011880Melon (DHL92) v3.5.1lsimeB439
Lsi07G011880Melon (DHL92) v3.5.1lsimeB446
Lsi07G011880Watermelon (Charleston Gray)lsiwcgB385
Lsi07G011880Watermelon (Charleston Gray)lsiwcgB389
Lsi07G011880Watermelon (97103) v1lsiwmB424
Lsi07G011880Watermelon (97103) v1lsiwmB429
Lsi07G011880Cucumber (Gy14) v2cgyblsiB217
Lsi07G011880Cucumber (Gy14) v2cgyblsiB218
Lsi07G011880Melon (DHL92) v3.6.1lsimedB458
Lsi07G011880Melon (DHL92) v3.6.1lsimedB462
Lsi07G011880Silver-seed gourdcarlsiB451
Lsi07G011880Silver-seed gourdcarlsiB721
Lsi07G011880Silver-seed gourdcarlsiB889
Lsi07G011880Silver-seed gourdcarlsiB882
Lsi07G011880Cucumber (Chinese Long) v3cuclsiB251
Lsi07G011880Watermelon (97103) v2lsiwmbB418
Lsi07G011880Wax gourdlsiwgoB566