Lsi07G010980 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G010980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionZeamatin
Locationchr07 : 16389180 .. 16389771 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATTAATATCTTTATTCAGCTATGTTCAAAGTAACAACAATCTACATAAGTTTAATTTTTTAAAAATTGAGAGAATAAAATTGACCTTTTAAAAAGTGGGAGGACATTGAAAAAGTAGTAGGAATTTGAGTAGCAAAGTGATTCTAACCATTTGTTCACATTGGATTCTTTGCAGCTTAAAATCATCAACAGATTCATCGCCAAGGACGGCGGCAGCTGGAACAGGGGCGGCAACCGCCGGGGTGGTGGCACAGACGACACCGCTGCCCGAAAGTTCATGGATGGCAGATTTGGCCATTGGAGGCTCAACCAGAATTCACCCAGCTGATTTGTTTTTTCTCCTGTTTGTGTTAATTTTTGGAAGCTCTTTATTCTTCTCATTTCTAAATTTATTTTCATCTTAGCATTAAAATTTTAAAGTCCCATAATGAAGAGATTGATGATTTGGAGAAACAAATGGATTCAAATTTCATATCACCAAAAGAAAGAAAAAAAGTTCCATTTTTCTACCATTTTCAAGAAGTAAATTTGTGTATATAAAAATATTGTAAGCATTATTTTTTTGCAAAAAGAAAGCCTTTCTAGTT

mRNA sequence

ATGGTAATTAATATCTTTATTCAGCTATGTTCAAACTTAAAATCATCAACAGATTCATCGCCAAGGACGGCGGCAGCTGGAACAGGGGCGGCAACCGCCGGGGTGGTGGCACAGACGACACCGCTGCCCGAAAGTTCATGGATGGCAGATTTGGCCATTGGAGGCTCAACCAGAATTCACCCAGCTGATTTGTTTTTTCTCCTGTTTGTGTTAATTTTTGGAAGCTCTTTATTCTTCTCATTTCTAAATTTATTTTCATCTTAGCATTAAAATTTTAAAGTCCCATAATGAAGAGATTGATGATTTGGAGAAACAAATGGATTCAAATTTCATATCACCAAAAGAAAGAAAAAAAGTTCCATTTTTCTACCATTTTCAAGAAGTAAATTTGTGTATATAAAAATATTGTAAGCATTATTTTTTTGCAAAAAGAAAGCCTTTCTAGTT

Coding sequence (CDS)

ATGGTAATTAATATCTTTATTCAGCTATGTTCAAACTTAAAATCATCAACAGATTCATCGCCAAGGACGGCGGCAGCTGGAACAGGGGCGGCAACCGCCGGGGTGGTGGCACAGACGACACCGCTGCCCGAAAGTTCATGGATGGCAGATTTGGCCATTGGAGGCTCAACCAGAATTCACCCAGCTGATTTGTTTTTTCTCCTGTTTGTGTTAATTTTTGGAAGCTCTTTATTCTTCTCATTTCTAAATTTATTTTCATCTTAG

Protein sequence

MVINIFIQLCSNLKSSTDSSPRTAAAGTGAATAGVVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFVLIFGSSLFFSFLNLFSS
Homology
[Close]
BLAST of Lsi07G010980 vs. TrEMBL
Match: E5RDD8_CUCME (Zeamatin OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-18
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 1 

Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFVL 71
           +LKSSTDSSPRT    TG  TAGVVAQ TPLP+SSWMAD+AIGGSTR +  DL FLLFVL
Sbjct: 249 SLKSSTDSSPRTTTTTTG--TAGVVAQMTPLPDSSWMADMAIGGSTRTYSTDLSFLLFVL 308

Query: 72  IFGSSL-FFSFLNLFSS 88
           IFGSSL FFS LNLFSS
Sbjct: 309 IFGSSLVFFSSLNLFSS 323

[Close]
BLAST of Lsi07G010980 vs. TrEMBL
Match: A0A0A0L119_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002750 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-12
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTT-PLPESSWMADLAIGGSTRIHPADLFFLLFV 71
           +LKSSTDS P+T        T GVVAQTT PLPESSW+ D+A+GGSTR H  D+ FLLFV
Sbjct: 242 SLKSSTDSPPKTTTG-----TTGVVAQTTMPLPESSWLVDMAMGGSTRTHQVDVSFLLFV 301

Query: 72  LIFGSSLFF 80
           LIFGSSL F
Sbjct: 302 LIFGSSLVF 305

[Close]
BLAST of Lsi07G010980 vs. NCBI nr
Match: gi|659095377|ref|XP_008448548.1| (PREDICTED: thaumatin-like protein 1 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-18
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 1 

Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFVL 71
           +LKSSTDSSPRT    TG  TAGVVAQ TPLP+SSWMAD+AIGGSTR +  DL FLLFVL
Sbjct: 249 SLKSSTDSSPRTTTTTTG--TAGVVAQMTPLPDSSWMADMAIGGSTRTYSTDLSFLLFVL 308

Query: 72  IFGSSL-FFSFLNLFSS 88
           IFGSSL FFS LNLFSS
Sbjct: 309 IFGSSLVFFSSLNLFSS 323

[Close]
BLAST of Lsi07G010980 vs. NCBI nr
Match: gi|778674757|ref|XP_004146144.2| (PREDICTED: thaumatin-like protein 1 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-12
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTT-PLPESSWMADLAIGGSTRIHPADLFFLLFV 71
           +LKSSTDS P+T        T GVVAQTT PLPESSW+ D+A+GGSTR H  D+ FLLFV
Sbjct: 242 SLKSSTDSPPKTTTG-----TTGVVAQTTMPLPESSWLVDMAMGGSTRTHQVDVSFLLFV 301

Query: 72  LIFGSSLFF 80
           LIFGSSL F
Sbjct: 302 LIFGSSLVF 305

The following BLAST results are available for this feature:
BLAST of Lsi07G010980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G010980 vs. TrEMBL
Match NameE-valueIdentityDescription
E5RDD8_CUCME4.0e-1877.92Zeamatin OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0L119_CUCSA4.3e-1266.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002750 PE=4 SV=1[more]
BLAST of Lsi07G010980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G010980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095377|ref|XP_008448548.1|5.7e-1877.92PREDICTED: thaumatin-like protein 1 [Cucumis melo][more]
gi|778674757|ref|XP_004146144.2|6.1e-1266.67PREDICTED: thaumatin-like protein 1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G010980.1Lsi07G010980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G010980CsaV3_3G000740Cucumber (Chinese Long) v3cuclsiB250
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G010980Cucumber (Chinese Long) v3cuclsiB498
Lsi07G010980Watermelon (97103) v2lsiwmbB392
Lsi07G010980Watermelon (97103) v2lsiwmbB395
Lsi07G010980Wax gourdlsiwgoB569
Lsi07G010980Wax gourdlsiwgoB575
Lsi07G010980Bottle gourd (USVL1VR-Ls)lsilsiB081
Lsi07G010980Bottle gourd (USVL1VR-Ls)lsilsiB143
Lsi07G010980Cucumber (Gy14) v1cgylsiB026
Lsi07G010980Cucumber (Gy14) v1cgylsiB530
Lsi07G010980Cucurbita maxima (Rimu)cmalsiB324
Lsi07G010980Cucurbita maxima (Rimu)cmalsiB452
Lsi07G010980Cucurbita maxima (Rimu)cmalsiB617
Lsi07G010980Cucurbita maxima (Rimu)cmalsiB805
Lsi07G010980Cucurbita moschata (Rifu)cmolsiB313
Lsi07G010980Cucurbita moschata (Rifu)cmolsiB439
Lsi07G010980Cucurbita moschata (Rifu)cmolsiB605
Lsi07G010980Cucurbita moschata (Rifu)cmolsiB791
Lsi07G010980Cucurbita pepo (Zucchini)cpelsiB066
Lsi07G010980Cucurbita pepo (Zucchini)cpelsiB183
Lsi07G010980Cucurbita pepo (Zucchini)cpelsiB408
Lsi07G010980Cucurbita pepo (Zucchini)cpelsiB474
Lsi07G010980Wild cucumber (PI 183967)cpilsiB227
Lsi07G010980Wild cucumber (PI 183967)cpilsiB476
Lsi07G010980Cucumber (Chinese Long) v2culsiB228
Lsi07G010980Cucumber (Chinese Long) v2culsiB468
Lsi07G010980Melon (DHL92) v3.5.1lsimeB446
Lsi07G010980Melon (DHL92) v3.5.1lsimeB459
Lsi07G010980Watermelon (Charleston Gray)lsiwcgB389
Lsi07G010980Watermelon (Charleston Gray)lsiwcgB395
Lsi07G010980Watermelon (97103) v1lsiwmB429
Lsi07G010980Watermelon (97103) v1lsiwmB453
Lsi07G010980Cucumber (Gy14) v2cgyblsiB217
Lsi07G010980Cucumber (Gy14) v2cgyblsiB436
Lsi07G010980Melon (DHL92) v3.6.1lsimedB462
Lsi07G010980Melon (DHL92) v3.6.1lsimedB477
Lsi07G010980Silver-seed gourdcarlsiB368
Lsi07G010980Silver-seed gourdcarlsiB389