Lsi03G017300 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAATCGGGAAGGAACGCAGCGGAGTCGGCGAAGGAATCGGCCGCCAATGTGGGGGCCTCTGCCAAAGCTGGCATGGAAAAGACCAAAGCCACTGCTCAAGAAAAGGTTTAATTACAATTTCTTTTTTCAAATTGCAAATTTAATTTCGGATATTACAATTTTGATATTTATCTTTATTTAACCTATTCTTTTGACTTTTATAGGTTTTTAAAACTTTAAAACAAAGGGGTCTTAGCTTGACGAACTTTTCTTCATTTAGAAGAGTTGCACACATGTTCAGTTCATTTTGTGCAAACTCTTTGTTCATAAATTTTATTTTATTTTATTTTATTTTTTCTCGACAGTTCTTTTATTTGGTGAGACTTCTATTTTTGTAAATAACGTGTTTGAAGTTAGTTAATGTCGTCTTTTGCTATGAACTTCTGCTCATTTATTTTGCTCTATTTCACAAGAAATGAGTATTTAGAAAGTAATAGAAAAGTGAATTATGTCAAAATTGCCCTAAAAATTATAGAAAAATTTTACGGTTGATATTTTATCTATTTATAATTTTTTTATATTCTAAAGGATTTGTAATTTTTCTAAATAAAAAACTCTAGTATTTAGAGAGTAATATAAAACTGAATCTTGTCAAAATTGAGATAAAAATTATTTTGCTTCTAGACTTGATTATTCTAGAGGATTTGTGATTTTTTTTCAACAATTAGCAAAAAAAAAGAATGTAGCTATTTTTTAGATAAAAATTATTTTTACTACTGGACTTAATTATTCTAATGAGGATTTGTAATTTTTTTTCAACAATTACCCAAAAAAAAAAAGAATTGTAGTTATTTTTTAAAATTAGAACATTGACGAAACGAAAAAAAGTTGGAACGTTGACGAAAAAGGGAGGGTGGCCGGTGGTGTTTTGTAATTAATTAATGCAAGGTTTTGAATATGATATGACAAACCCACGCTATTATAAATATGGTAGATAAAACACACATAAATATAGTAAATAAAACACGTGGTATAATGGATATAATTAATAATTTATTCTAAAAAAAAAAATAGTAACTCAAGTAATAGTCACATACATGACACACATACCTACTTAGCTTAGCCTATAAATACTTATGGAGGCAAAATATTGGATTTAGTATGATATTTAATACCTACTTAGCCTACAAATATTTATACCTACCTACGATATTTATGAAGCCAAAATATTGGATTTATTGTTAAAAATAGTCCTTTAGAAAACAATTTGCAAAAAACTAGTTGTATGGAATATTTATATTAGTTTCTACAACCCACTAAAAGTTTATGTATGTATTGAAAGTTTTCTTTTATTTTCTTTGTATCAGAAGTTTTGTTCTTTTATTTTCTTTTCACTTTTTTTTTTTAAATTTATTTTGGATCTTTTATTTTCTTTTCACTTTTTTTTAAAAATTATTTTGGACCTTATTTTCTTTTTTTAGTCCGTACAAGTTTATATGTATGTAAAATAACTTTTATTCTTTCACTGTTTTTATATATTTTGGACCTTATTTTCATTTTTTTTAAGATTTAAATTAACAATAAAATGTTTAATTAATTTTTTTAAAAAAATAAACGAAAATTAAAAATTATCAAACTATATTTTTTAATTTAAAGAATAAAAAATAAAAAATGAAAATATTTAAATAGTCAAGCTTAAGTCAGGGTATTGTAGTGTCTGACTTGCATCGTGTGAGTCTCATATTGAGAGTCAAGGAATTGGAAAATTTTACCGTTTATCTATATATATATATATATATATATATATATATATATTTTAAAAAAAAGTTTCAATTTGCAGAAAAAATTTATTTAATTCTATTTGTAAAAATACTTTTCATACAAGGTTTTTTTTCAGGACTTTTTCATACTATTCTTTTAAAGAGATTATATTTTAACACTAGTTTCCAAAATATTTGTGTAGCGGACTATTAATTTGAATTGACACTATCATTAAATAATATATTAAATTAGACAATAAAAACACATCATATAGTTAACGCGTGCAAATGCCAGGTGGACAAAATGCGGGCCCACGATCCAATTGAGAAAGACATGGCGAGAGAAAGGAAAGAGGGGAGGGTTCAGGAGGCTGAGCTGGACAAGCAGCAGGCGCGTGCAGAACACGCAGCAGAGAAGCAGGCCGGTTCAGGACCCGGGACCCGTGTCGGGTTGGGAACCGGGACTGGAACTGGAACCCACACCTATGACCCGACCGTGGGTAGATAA ATGCAATCGGGAAGGAACGCAGCGGAGTCGGCGAAGGAATCGGCCGCCAATGTGGGGGCCTCTGCCAAAGCTGGCATGGAAAAGACCAAAGCCACTGCTCAAGAAAAGGTGGACAAAATGCGGGCCCACGATCCAATTGAGAAAGACATGGCGAGAGAAAGGAAAGAGGGGAGGGTTCAGGAGGCTGAGCTGGACAAGCAGCAGGCGCGTGCAGAACACGCAGCAGAGAAGCAGGCCGGTTCAGGACCCGGGACCCGTGTCGGGTTGGGAACCGGGACTGGAACTGGAACCCACACCTATGACCCGACCGTGGGTAGATAA ATGCAATCGGGAAGGAACGCAGCGGAGTCGGCGAAGGAATCGGCCGCCAATGTGGGGGCCTCTGCCAAAGCTGGCATGGAAAAGACCAAAGCCACTGCTCAAGAAAAGGTGGACAAAATGCGGGCCCACGATCCAATTGAGAAAGACATGGCGAGAGAAAGGAAAGAGGGGAGGGTTCAGGAGGCTGAGCTGGACAAGCAGCAGGCGCGTGCAGAACACGCAGCAGAGAAGCAGGCCGGTTCAGGACCCGGGACCCGTGTCGGGTTGGGAACCGGGACTGGAACTGGAACCCACACCTATGACCCGACCGTGGGTAGATAA MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQEAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPTVGR
BLAST of Lsi03G017300 vs. Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20 Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1
BLAST of Lsi03G017300 vs. Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 6.3e-19 Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 1
BLAST of Lsi03G017300 vs. Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 4.8e-11 Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1
BLAST of Lsi03G017300 vs. Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10 Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1
BLAST of Lsi03G017300 vs. TrEMBL
Match: A0A0A0LBV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808370 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 3.0e-36 Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 1
BLAST of Lsi03G017300 vs. TrEMBL
Match: A0A103YMX2_CYNCS (Late embryogenesis abundant protein, LEA-25/LEA-D113 (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_009534 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 1.7e-18 Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1
BLAST of Lsi03G017300 vs. TrEMBL
Match: A0A059A421_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K01836 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 2.8e-18 Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1
BLAST of Lsi03G017300 vs. TrEMBL
Match: A0A165YHG0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013554 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17 Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 1
BLAST of Lsi03G017300 vs. TrEMBL
Match: A0A103XPZ6_CYNCS (Late embryogenesis abundant protein, LEA-25/LEA-D113 OS=Cynara cardunculus var. scolymus GN=Ccrd_003231 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17 Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = 1
BLAST of Lsi03G017300 vs. TAIR10
Match: AT5G06760.1 (AT5G06760.1 Late Embryogenesis Abundant 4-5) HSP 1 Score: 77.4 bits (189), Expect = 5.9e-15 Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = 1
BLAST of Lsi03G017300 vs. NCBI nr
Match: gi|700204175|gb|KGN59308.1| (hypothetical protein Csa_3G808370 [Cucumis sativus]) HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36 Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 1
BLAST of Lsi03G017300 vs. NCBI nr
Match: gi|976929192|gb|KVI12051.1| (Late embryogenesis abundant protein, LEA-25/LEA-D113, partial [Cynara cardunculus var. scolymus]) HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18 Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1
BLAST of Lsi03G017300 vs. NCBI nr
Match: gi|1170744|sp|P46515.1|LEA11_HELAN (RecName: Full=11 kDa late embryogenesis abundant protein; AltName: Full=DS11 [Helianthus annuus]) HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18 Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1
BLAST of Lsi03G017300 vs. NCBI nr
Match: gi|629081655|gb|KCW48100.1| (hypothetical protein EUGRSUZ_K01836, partial [Eucalyptus grandis]) HSP 1 Score: 99.4 bits (246), Expect = 4.1e-18 Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1
BLAST of Lsi03G017300 vs. NCBI nr
Match: gi|702493464|ref|XP_010036485.1| (PREDICTED: 18 kDa seed maturation protein [Eucalyptus grandis]) HSP 1 Score: 99.4 bits (246), Expect = 4.1e-18 Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|