Lsi03G012910 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G012910
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 23730699 .. 23731027 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACTCATAAGTTTTTTACGGTGTCTATTATTGTCTTGATGATGTTCACTTGTTTTGTTTCATCAGGTATGTATTCTTATCTCATAACTCTTTTGATTTCATAATATTTTGTCTTTTTTGCTAAAACAATATTTTTAACAATGTTAATTTGCGGTCTAATGCAGCAAAAGAAGACATATACATGAGTTGTATTCGACCATGTTCTGACACTTACGACGATGATTCATGTTATAATGATTGCATCCGACATAACAAAGGTGCTGGATTTTGCTATCTCAAGCTGCCTAACACTTCTAATGAAAAAGATTGTTGTTGCAATAATTGA

mRNA sequence

ATGACGACTCATAAGTTTTTTACGGTGTCTATTATTGTCTTGATGATGTTCACTTGTTTTGTTTCATCAGCAAAAGAAGACATATACATGAGTTGTATTCGACCATGTTCTGACACTTACGACGATGATTCATGTTATAATGATTGCATCCGACATAACAAAGGTGCTGGATTTTGCTATCTCAAGCTGCCTAACACTTCTAATGAAAAAGATTGTTGTTGCAATAATTGA

Coding sequence (CDS)

ATGACGACTCATAAGTTTTTTACGGTGTCTATTATTGTCTTGATGATGTTCACTTGTTTTGTTTCATCAGCAAAAGAAGACATATACATGAGTTGTATTCGACCATGTTCTGACACTTACGACGATGATTCATGTTATAATGATTGCATCCGACATAACAAAGGTGCTGGATTTTGCTATCTCAAGCTGCCTAACACTTCTAATGAAAAAGATTGTTGTTGCAATAATTGA

Protein sequence

MTTHKFFTVSIIVLMMFTCFVSSAKEDIYMSCIRPCSDTYDDDSCYNDCIRHNKGAGFCYLKLPNTSNEKDCCCNN
Homology
[Close]
BLAST of Lsi03G012910 vs. TrEMBL
Match: A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-20
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MTTHKFFTVSIIVLMMFTCFVSSAKEDIY-MSCIRPCSDTYDDDSCYNDCIRHNKGAGFC 60
          M T K  T+SI+VLM+F C  S+ K D+  + C+RPCSDTYDD+SCYNDCI+ N GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YLKLPNTSNEKDCCCN 76
          Y KLP+T  +KDCCCN
Sbjct: 61 YPKLPST--DKDCCCN 74

[Close]
BLAST of Lsi03G012910 vs. TrEMBL
Match: A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.3e-20
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 1  MTTHKFFTVSIIVLMMFTCFVSSAKEDIY-MSCIRPCSDTYDDDSCYNDCIRHNKGAGFC 60
          M T K  T+SI+VL++F C VS+ K D+  + C+RPC DTYDD+SCYNDCIR N GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YLKLPNTSNEKDCCCNN 77
          Y KLP+T  +KDCCCN+
Sbjct: 61 YPKLPST--DKDCCCND 75

[Close]
BLAST of Lsi03G012910 vs. TrEMBL
Match: A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-15
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 23 SAKEDIY-MSCIRPCSDTYDDDSCYNDCIRHNKGAGFCYLKLPNTSNEKDCCCN 76
          +AK DI  + C+RPCSDTYDD+SCYNDCIR N GAGFCY KLP+T  +KDCCCN
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPST--DKDCCCN 53

[Close]
BLAST of Lsi03G012910 vs. TrEMBL
Match: A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-11
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1 

Query: 1  MTTHKFFTVSIIVLMMFTCFVSSAKEDIYMSCIRPCSDTYDDDSCYNDCIRHNKGAGFCY 60
          M T K F VS++V + F+CF SS + D   +C+ PCS+   D  C   CI  ++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 LKLPNTSNEKDCCCNN 77
           KLP  S+ K CCCNN
Sbjct: 61 PKLPGISDMKVCCCNN 76

[Close]
BLAST of Lsi03G012910 vs. NCBI nr
Match: gi|700206109|gb|KGN61228.1| (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-20
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MTTHKFFTVSIIVLMMFTCFVSSAKEDIY-MSCIRPCSDTYDDDSCYNDCIRHNKGAGFC 60
          M T K  T+SI+VLM+F C  S+ K D+  + C+RPCSDTYDD+SCYNDCI+ N GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YLKLPNTSNEKDCCCN 76
          Y KLP+T  +KDCCCN
Sbjct: 61 YPKLPST--DKDCCCN 74

[Close]
BLAST of Lsi03G012910 vs. NCBI nr
Match: gi|700206110|gb|KGN61229.1| (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 1  MTTHKFFTVSIIVLMMFTCFVSSAKEDIY-MSCIRPCSDTYDDDSCYNDCIRHNKGAGFC 60
          M T K  T+SI+VL++F C VS+ K D+  + C+RPC DTYDD+SCYNDCIR N GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YLKLPNTSNEKDCCCNN 77
          Y KLP+T  +KDCCCN+
Sbjct: 61 YPKLPST--DKDCCCND 75

[Close]
BLAST of Lsi03G012910 vs. NCBI nr
Match: gi|700206108|gb|KGN61227.1| (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-15
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 23 SAKEDIY-MSCIRPCSDTYDDDSCYNDCIRHNKGAGFCYLKLPNTSNEKDCCCN 76
          +AK DI  + C+RPCSDTYDD+SCYNDCIR N GAGFCY KLP+T  +KDCCCN
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPST--DKDCCCN 53

[Close]
BLAST of Lsi03G012910 vs. NCBI nr
Match: gi|700199339|gb|KGN54497.1| (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-11
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1 

Query: 1  MTTHKFFTVSIIVLMMFTCFVSSAKEDIYMSCIRPCSDTYDDDSCYNDCIRHNKGAGFCY 60
          M T K F VS++V + F+CF SS + D   +C+ PCS+   D  C   CI  ++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 LKLPNTSNEKDCCCNN 77
           KLP  S+ K CCCNN
Sbjct: 61 PKLPGISDMKVCCCNN 76

The following BLAST results are available for this feature:
BLAST of Lsi03G012910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G012910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHG9_CUCSA2.8e-2063.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG5_CUCSA6.3e-2062.34Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF5_CUCSA4.7e-1572.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R8_CUCSA2.4e-1147.37Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1[more]
BLAST of Lsi03G012910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G012910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206109|gb|KGN61228.1|4.1e-2063.16hypothetical protein Csa_2G071930 [Cucumis sativus][more]
gi|700206110|gb|KGN61229.1|9.1e-2062.34hypothetical protein Csa_2G072430 [Cucumis sativus][more]
gi|700206108|gb|KGN61227.1|6.7e-1572.22hypothetical protein Csa_2G070930 [Cucumis sativus][more]
gi|700199339|gb|KGN54497.1|3.5e-1147.37hypothetical protein Csa_4G339000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G012910.1Lsi03G012910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G012910Cucumber (Gy14) v1cgylsiB551
Lsi03G012910Cucurbita maxima (Rimu)cmalsiB240
Lsi03G012910Cucurbita maxima (Rimu)cmalsiB755
Lsi03G012910Cucurbita moschata (Rifu)cmolsiB228
Lsi03G012910Cucurbita moschata (Rifu)cmolsiB231
Lsi03G012910Cucurbita moschata (Rifu)cmolsiB748
Lsi03G012910Cucurbita pepo (Zucchini)cpelsiB500
Lsi03G012910Cucurbita pepo (Zucchini)cpelsiB504
Lsi03G012910Cucurbita pepo (Zucchini)cpelsiB709
Lsi03G012910Wild cucumber (PI 183967)cpilsiB184
Lsi03G012910Cucumber (Chinese Long) v2culsiB186
Lsi03G012910Melon (DHL92) v3.5.1lsimeB260
Lsi03G012910Watermelon (Charleston Gray)lsiwcgB219
Lsi03G012910Watermelon (97103) v1lsiwmB240
Lsi03G012910Cucumber (Gy14) v2cgyblsiB171
Lsi03G012910Melon (DHL92) v3.6.1lsimedB273
Lsi03G012910Silver-seed gourdcarlsiB249
Lsi03G012910Cucumber (Chinese Long) v3cuclsiB203
Lsi03G012910Watermelon (97103) v2lsiwmbB218
Lsi03G012910Wax gourdlsiwgoB292