Lsi03G011920 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G011920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L1
Location	chr03 : 22360946 .. 22362842 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGTTCCCAATTTCAGTCCGTGGCAGTTTGATTTCGGTCGAACCAAATAGTAGGTTTTTATGCATCTAGATTCCTTTTTTCTTTAGAGGTGTTTGGCCCTAGGAGTTCATGGGCCCCATGACTTAAAAACATCAATTCTATGACTTATTAACTCCCTACACTGTGGAACCCATAGTTAAACAACTCCATAAACTACACAACTCAACTCCTTGGGCCAAATGCCCCTTCGTAGATGCTTTTTAAAAGAACTTTACTGTTTAGGTGCAATCCTAAAAGTTGAAAGAAATACACAGGTGAGAAATTCGATGAAGCAAAAAATGCTGGAGCGGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTATTGCCCTGAGTGCATTACTCCAATCATTCTTTCATTTATCTTTTGAGATTTTTATGACTTTCACAACATATAAATTGTTTTCCTAAACAAGTTGCATAACTTTAAAAGATGAATTAGATGGTTAGGATTACACTGGTGATACTGCTTATGTAATGCAGAAAGAAATAAGAAAACAAGAGACATGAATACCAATTTAATAGTCACCCTGAGTTTACTGAACCATTTTCGGTCATAGATATGCTTCCTAGATTTTGTTGATCAGAGTGCTTGCCTTATGGCTGCAGCCAAATTTGACCCATTTCTTAAAATTGACGAAGTCTCTGTATGCAAAGTGTTATCTGGTCCTCGTTGATGACAATATAGTTGATTCCCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGACTCATGCCGAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGTATCAATGATATTTTTCCAGTACCTACATTGCATCCAGATTTCATATCTATCCACTGGAAAAAGAAATTTAAGACTTTAGTTAAACCATCGGGCATCACTGATTTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCACTTACCATTTGGAAAAGCTGACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAGTACGTTCTTCCCTTCTTTCTGTAGCCGATAGTCTCTAGAGACAGATCTCACTCATTTTTGATAAGTCATTTTCTTCTACCTCTGACAGAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGAGATGCTGGACTTCAAACTTCCCTCAAGCGCTTGACGAATAACAGACCTGTACATTCCTTCTGTTTGTTGAATCAGCCTCTGGGGAATCCACTGGAATATAATGATGCCCAAATGTGAGCAGCACTGGAAACAAGATGATTGAAGAAACTAGGAAAAAGAGTGAGGAGACATCAGATAATTATGATTACACAGCAACAAGCATACTGCATAGTCTTCTATACTGACTGACTTTGTATTAATGGTGTTAAGTTCTTATTGATCTACCACACTTTGATTGACCTCTTGGGTTTTAAGGGGGAAAAATGATAAATGTACTGAATTGTATTGACCAGTTGCTGCTCATTTATATAGCACATTTCGAAAGTGGTTGTTCTTGTTGATTCGTCGTAAAGGGTCATTTGGTATGCAAATACAGTTCTATCGATGTAAGTTACTTAATTTCATATTTTGACATGCAAATCTGGATGATATACGGGATCAAGCTCCAAATTCTATTCTTGTTTAGGGGCTTTCATTATGTAATCATGGACTCAAGTCTTTCTAGTTTCTGATCAATCATATTCTCGAGCTTCTGTTTTGAGC

mRNA sequence

ATGGATCGTTCCCAATTTCAGTCCGTGGCACCAAATTTGACCCATTTCTTAAAATTGACGAAGTCTCTGTATGCAAAGTGTTATCTGGTCCTCGTTGATGACAATATAGTTGATTCCCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGACTCATGCCGAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCACTTACCATTTGGAAAAGCTGACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGAGATGCTGGACTTCAAACTTCCCTCAAGCGCTTGACGAATAACAGACCTGTACATTCCTTCTGTTTGTTGAATCAGCCTCTGGGGAATCCACTGGAATATAATGATGCCCAAATGTGAGCAGCACTGGAAACAAGATGATTGAAGAAACTAGGAAAAAGAGTGAGGAGACATCAGATAATTATGATTACACAGCAACAAGCATACTGCATAGTCTTCTATACTGACTGACTTTGTATTAATGGTGTTAAGTTCTTATTGATCTACCACACTTTGATTGACCTCTTGGGTTTTAAGGGGGAAAAATGATAAATGTACTGAATTGTATTGACCAGTTGCTGCTCATTTATATAGCACATTTCGAAAGTGGTTGTTCTTGTTGATTCGTCGTAAAGGGTCATTTGGTATGCAAATACAGTTCTATCGATGTAAGTTACTTAATTTCATATTTTGACATGCAAATCTGGATGATATACGGGATCAAGCTCCAAATTCTATTCTTGTTTAGGGGCTTTCATTATGTAATCATGGACTCAAGTCTTTCTAGTTTCTGATCAATCATATTCTCGAGCTTCTGTTTTGAGC

Coding sequence (CDS)

ATGGATCGTTCCCAATTTCAGTCCGTGGCACCAAATTTGACCCATTTCTTAAAATTGACGAAGTCTCTGTATGCAAAGTGTTATCTGGTCCTCGTTGATGACAATATAGTTGATTCCCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGACTCATGCCGAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCACTTACCATTTGGAAAAGCTGACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGAGATGCTGGACTTCAAACTTCCCTCAAGCGCTTGA

Protein sequence

MDRSQFQSVAPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA

Homology

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BLAST of Lsi03G011920 vs. Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-51
Identity = 93/115 (80.87%), Postives = 107/115 (93.04%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+E
Sbjct: 231 KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTE 290

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 155
           EDLLIN LAA+KS+ETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK P++
Sbjct: 291 EDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of Lsi03G011920 vs. Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.5e-49
Identity = 91/117 (77.78%), Postives = 105/117 (89.74%), Query Frame = 1


Query: 39  SQVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 98
           ++VASLG++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F 
Sbjct: 236 AKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFE 295

Query: 99  EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 156
           EEDLLINL A IKS+ETNKP+GAKGVYWKSAHI SSMGPSIRLNIREMLD+K PS+A
Sbjct: 296 EEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]

BLAST of Lsi03G011920 vs. Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.5e-37
Identity = 71/116 (61.21%), Postives = 95/116 (81.90%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           QVA +G++LGPRGLMP+PKAGTV  +LPQAI EFK GKVE+RAD++GIVH+ FGKA FS 
Sbjct: 122 QVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSA 181

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 156
           EDLL+NL A  +SI+ N+PSGAKG YW+S ++ ++MGPSI+++I  + + KL  +A
Sbjct: 182 EDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINALRELKLAEAA 237

[Close]

BLAST of Lsi03G011920 vs. Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-36
Identity = 70/116 (60.34%), Postives = 94/116 (81.03%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           QVA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS 
Sbjct: 123 QVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSP 182

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 156
           EDLL+NL A  ++I+ N+PSGAKG YW++ ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 183 EDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of Lsi03G011920 vs. Swiss-Prot
Match: RL1_NOSS1 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplA PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-36
Identity = 70/116 (60.34%), Postives = 94/116 (81.03%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           QVA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS 
Sbjct: 123 QVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSP 182

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 156
           EDLL+NL A  ++I+ N+PSGAKG YW++ ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 183 EDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of Lsi03G011920 vs. TrEMBL
Match: A0A0A0LD08_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_3G687730 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.5e-57
Identity = 112/116 (96.55%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSE
Sbjct: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 156
           EDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 301 EDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Lsi03G011920 vs. TrEMBL
Match: F6HBE6_VITVI (Ribosomal protein OS=Vitis vinifera GN=VIT_13s0064g00170 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 104/115 (90.43%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGKLLGPRGLMPNPKAGTV TN+PQAIAEFK+GKVEYRADKTGIVHLPFGKADFSE
Sbjct: 232 KVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSE 291

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 155
           EDLL NL+AA+KS+ETNKPSGAKGVYW+SAHICSSMGPSIRLNIREMLD+K PSS
Sbjct: 292 EDLLANLIAAVKSVETNKPSGAKGVYWRSAHICSSMGPSIRLNIREMLDYKSPSS 346

[Close]

BLAST of Lsi03G011920 vs. TrEMBL
Match: B9RVK2_RICCO (Ribosomal protein OS=Ricinus communis GN=RCOM_0963900 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 104/115 (90.43%), Postives = 114/115 (99.13%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGK+LGPRGLMPNPKAGTVATN+PQAIAEFK+GKVEYRADKTGIVH+PFGKADFSE
Sbjct: 245 KVASLGKILGPRGLMPNPKAGTVATNIPQAIAEFKKGKVEYRADKTGIVHIPFGKADFSE 304

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 155
           +DLL+NL AAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREML++KLPS+
Sbjct: 305 DDLLVNLHAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLEYKLPSN 359

[Close]

BLAST of Lsi03G011920 vs. TrEMBL
Match: A0A0A0K886_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.8e-54
Identity = 103/115 (89.57%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGKLLGPRGLMPNPKAGTV TN+PQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE
Sbjct: 244 KVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 303

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 155
           +DLL+NLL+AIKS+E NKP+GAKGVYWKSAHICSSMGPSIRLN REMLD+K+PSS
Sbjct: 304 DDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSS 358

[Close]

BLAST of Lsi03G011920 vs. TrEMBL
Match: A9PK56_9ROSI (Ribosomal protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.7e-54
Identity = 102/116 (87.93%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGK+LGPRGLMPNPKAGTV T++PQAIAEFK+GKVEYRADKTGIVH+PFGKADFSE
Sbjct: 240 KVASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHIPFGKADFSE 299

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 156
           EDLL+NLLAA+KS+E NKPSGAKGVYWKSAHICSSMGPSIRLN REMLD+KLPS+A
Sbjct: 300 EDLLVNLLAAVKSVEANKPSGAKGVYWKSAHICSSMGPSIRLNTREMLDYKLPSNA 355

[Close]

BLAST of Lsi03G011920 vs. TAIR10
Match: AT3G63490.1 (AT3G63490.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 204.1 bits (518), Expect = 6.1e-53
Identity = 93/115 (80.87%), Postives = 107/115 (93.04%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+E
Sbjct: 231 KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTE 290

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 155
           EDLLIN LAA+KS+ETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK P++
Sbjct: 291 EDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of Lsi03G011920 vs. TAIR10
Match: AT2G42710.1 (AT2G42710.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 84.0 bits (206), Expect = 9.2e-17
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +V  + ++L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK  FSE
Sbjct: 291 RVYKISRILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSE 350

Query: 100 EDLLINLLAAIKSIETNKPSGAKGV-----YWKSAHICSSMGPSIRLNIREM 147
           E L  N+ A + ++   KP+G K       Y  + H+CS+MG    ++I+ +
Sbjct: 351 EALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

[Close]

BLAST of Lsi03G011920 vs. NCBI nr
Match: gi|659123753|ref|XP_008461822.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSE
Sbjct: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 156
           EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Lsi03G011920 vs. NCBI nr
Match: gi|449464018|ref|XP_004149726.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 5.0e-57
Identity = 112/116 (96.55%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSE
Sbjct: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 156
           EDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 301 EDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Lsi03G011920 vs. NCBI nr
Match: gi|659123002|ref|XP_008461436.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-54
Identity = 104/115 (90.43%), Postives = 113/115 (98.26%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGKLLGPRGLMPNPKAGTV TN+PQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE
Sbjct: 179 KVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 238

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 155
           +DLL+NLL+AIKS+E NKP+GAKGVYWKSAHICSSMGPSIRLNIREMLD+K+PSS
Sbjct: 239 DDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSS 293

[Close]

BLAST of Lsi03G011920 vs. NCBI nr
Match: gi|297736325|emb|CBI24963.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 219.9 bits (559), Expect = 3.0e-54
Identity = 104/115 (90.43%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGKLLGPRGLMPNPKAGTV TN+PQAIAEFK+GKVEYRADKTGIVHLPFGKADFSE
Sbjct: 228 KVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSE 287

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 155
           EDLL NL+AA+KS+ETNKPSGAKGVYW+SAHICSSMGPSIRLNIREMLD+K PSS
Sbjct: 288 EDLLANLIAAVKSVETNKPSGAKGVYWRSAHICSSMGPSIRLNIREMLDYKSPSS 342

[Close]

BLAST of Lsi03G011920 vs. NCBI nr
Match: gi|225450011|ref|XP_002274498.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic [Vitis vinifera])

HSP 1 Score: 219.9 bits (559), Expect = 3.0e-54
Identity = 104/115 (90.43%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 40  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 99
           +VASLGKLLGPRGLMPNPKAGTV TN+PQAIAEFK+GKVEYRADKTGIVHLPFGKADFSE
Sbjct: 232 KVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSE 291

Query: 100 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 155
           EDLL NL+AA+KS+ETNKPSGAKGVYW+SAHICSSMGPSIRLNIREMLD+K PSS
Sbjct: 292 EDLLANLIAAVKSVETNKPSGAKGVYWRSAHICSSMGPSIRLNIREMLDYKSPSS 346

The following BLAST results are available for this feature:

BLAST of Lsi03G011920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK1_ARATH	1.1e-51	80.87	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=...	[more]
RK1_SPIOL	6.5e-49	77.78	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1	[more]
RL1_THEEB	7.5e-37	61.21	50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA ...	[more]
RL1_ANAVT	2.2e-36	60.34	50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) G...	[more]
RL1_NOSS1	2.8e-36	60.34	50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplA PE=...	[more]

BLAST of Lsi03G011920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD08_CUCSA	3.5e-57	96.55	Ribosomal protein OS=Cucumis sativus GN=Csa_3G687730 PE=3 SV=1	[more]
F6HBE6_VITVI	2.1e-54	90.43	Ribosomal protein OS=Vitis vinifera GN=VIT_13s0064g00170 PE=3 SV=1	[more]
B9RVK2_RICCO	2.1e-54	90.43	Ribosomal protein OS=Ricinus communis GN=RCOM_0963900 PE=3 SV=1	[more]
A0A0A0K886_CUCSA	2.8e-54	89.57	Ribosomal protein OS=Cucumis sativus GN=Csa_7G420870 PE=3 SV=1	[more]
A9PK56_9ROSI	4.7e-54	87.93	Ribosomal protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1	[more]

BLAST of Lsi03G011920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63490.1	6.1e-53	80.87	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	9.2e-17	36.61	Ribosomal protein L1p/L10e family	[more]

BLAST of Lsi03G011920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123753\|ref\|XP_008461822.1\|	2.2e-57	97.41	PREDICTED: 50S ribosomal protein L1, chloroplastic [Cucumis melo]	[more]
gi\|449464018\|ref\|XP_004149726.1\|	5.0e-57	96.55	PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus]	[more]
gi\|659123002\|ref\|XP_008461436.1\|	1.0e-54	90.43	PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis melo]	[more]
gi\|297736325\|emb\|CBI24963.3\|	3.0e-54	90.43	unnamed protein product [Vitis vinifera]	[more]
gi\|225450011\|ref\|XP_002274498.1\|	3.0e-54	90.43	PREDICTED: 50S ribosomal protein L1, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR023674	Ribosomal_L1-like
IPR016095	Ribosomal_L1_3-a/b-sand
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0008150	biological_process
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0006412	translation
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0019752	carboxylic acid metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0044711	single-organism biosynthetic process
biological_process	GO:0009657	plastid organization
biological_process	GO:1901566	organonitrogen compound biosynthetic process
biological_process	GO:0019682	glyceraldehyde-3-phosphate metabolic process
biological_process	GO:0051649	establishment of localization in cell
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G011920.1	Lsi03G011920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich	GENE3D	G3DSA:3.30.190.20		coord: 71..144 score: 9.0
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	G3DSA:3.40.50.790		coord: 39..70 score: 1.1
IPR023674	Ribosomal protein L1-like	unknown	SSF56808	Ribosomal protein L1	coord: 18..143 score: 6.02
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 40..148 score: 5.7
None	No IPR available	PANTHER	PTHR23105:SF5	39S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL	coord: 40..148 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G011920	CmaCh14G009850	Cucurbita maxima (Rimu)	cmalsiB240
Lsi03G011920	CmoCh14G010080	Cucurbita moschata (Rifu)	cmolsiB228
Lsi03G011920	MELO3C023582	Melon (DHL92) v3.5.1	lsimeB248
Lsi03G011920	MELO3C023582.2	Melon (DHL92) v3.6.1	lsimedB261
Lsi03G011920	Cp4.1LG03g04730	Cucurbita pepo (Zucchini)	cpelsiB500
Lsi03G011920	CsGy7G017330	Cucumber (Gy14) v2	cgyblsiB483
Lsi03G011920	Carg11208	Silver-seed gourd	carlsiB748

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G011920	Cucumber (Chinese Long) v3	cuclsiB200
Lsi03G011920	Cucumber (Chinese Long) v3	cuclsiB550
Lsi03G011920	Watermelon (97103) v2	lsiwmbB218
Lsi03G011920	Watermelon (97103) v2	lsiwmbB253
Lsi03G011920	Wax gourd	lsiwgoB292
Lsi03G011920	Bottle gourd (USVL1VR-Ls)	lsilsiB091
Lsi03G011920	Cucumber (Gy14) v1	cgylsiB200
Lsi03G011920	Cucumber (Gy14) v1	cgylsiB407
Lsi03G011920	Cucurbita maxima (Rimu)	cmalsiB351
Lsi03G011920	Cucurbita maxima (Rimu)	cmalsiB422
Lsi03G011920	Cucurbita maxima (Rimu)	cmalsiB831
Lsi03G011920	Cucurbita moschata (Rifu)	cmolsiB340
Lsi03G011920	Cucurbita moschata (Rifu)	cmolsiB409
Lsi03G011920	Cucurbita moschata (Rifu)	cmolsiB817
Lsi03G011920	Cucurbita pepo (Zucchini)	cpelsiB116
Lsi03G011920	Cucurbita pepo (Zucchini)	cpelsiB266
Lsi03G011920	Cucurbita pepo (Zucchini)	cpelsiB452
Lsi03G011920	Wild cucumber (PI 183967)	cpilsiB181
Lsi03G011920	Wild cucumber (PI 183967)	cpilsiB530
Lsi03G011920	Cucumber (Chinese Long) v2	culsiB183
Lsi03G011920	Cucumber (Chinese Long) v2	culsiB516
Lsi03G011920	Melon (DHL92) v3.5.1	lsimeB260
Lsi03G011920	Watermelon (Charleston Gray)	lsiwcgB217
Lsi03G011920	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G011920	Watermelon (97103) v1	lsiwmB234
Lsi03G011920	Watermelon (97103) v1	lsiwmB240
Lsi03G011920	Cucumber (Gy14) v2	cgyblsiB168
Lsi03G011920	Melon (DHL92) v3.6.1	lsimedB273
Lsi03G011920	Silver-seed gourd	carlsiB410
Lsi03G011920	Silver-seed gourd	carlsiB699