Lsi01G001850 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G001850
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 1794650 .. 1796203 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCTCCAAGATCAGTCCATCTTCAGGCTCTTAACTACAAACGCCTCCTTACTTCGGGATTTGAGAGAGAGGACATAAACTTTGAGACTAACAATTCAAACATGAATCTTCCTGAATTCAATGAACACGATGATTCGTATGCACGCCGATTAGAAACCCTTGCCGCATTCAATCTTAGACTTTTTCAAGAAAGTAAGGATTATTTCCTTGAAAATTCATTTTATTCTCAATATCATATCAATGAAGACGAAGATATTCTCTTACGCTTCGCGGAATTGTCAGATACTGAAATATTGAACACTGAACTGGATGATTGTTCAAGCCTTGCAGATAAAGAAAGCTATGTCGGATCCGAGCATAATGTTGAAGAAGAAGATCAGGAAGATCTCCTTGAAGATGCATTGCCTCCTCCAAATGATATCAAGGAAGACGAAGAAGATATTCTCCTTCGGCTCATGGAAGTGTCCGTGGAGTCGGATCCTGAATTGGAAACAGAACAGAAGGAAAGCCACGGCGGATTCAAGCATAAAATTGTAAGAGAAAATCAGGAATATTTCCTTCAAGATCCAGCGTATCTTGAAGATGATATCAAGGAAGACGAAGATATCCTCCGCCGGTTGGAATCAGATGATGAATTCAAGACAGAACAGAAAAAGGAAGATGAAGATATTCTCCGTCGGTTGAACGAATCAGTCATGGAGTCGGCTCTTCAATCCGCGACCGCGGCTTATGAAATCAGGAAAGAACAAAAAGATCGGCATGTATGTTCGAATTGTCATCAAAGGCTTGCATATAAAGAAAGCGAAGCCGGATTTAAGCAAAGAATGGACGAAGCAATTCAGAAAAAACTCCACGAAGAAGCATCGCATTCTCCAGATAATATCAAGGAAGCCGAAGATCCGCTCATTCTGTTCATGGAGTCAGTTCTTGAAGCCGTGAACGCCGGTGAGAAAGAACAAATGAAAGATGTGAACGGAGATTTGAAAGGCGGATTAAAGCAGAAAATGACGACAGAGAAGGTCGATCTGTTTGATTCGGGCTCTCTTCAAGTTGTGGAGGAAATTGTGTTGAAATTTTACCAATTCATTGATCATATAATCCCGATATTGAAAGATACAGAGAAAGTGAGATTCGAAGTGCAGGATAAGTTTGAGAAGGTAAACGATCTGCTTGTGACTTGGTCTAAAATTGTGAACAAACTGATCAACGAACTGGAACGCATGAAGAATGATGGAAAAATTAATGGAAAAACTGAAAATATTCCTGAAATTTTAGTTCAACTGGAGATTAATGCACATTTGGTGGAACGATCTTTCCATCACGGCATTGGGTTTGTGTTTAATAACAAAAGTAGTAGGGAAAATGAGTTATCAGGTTGTATAAAAGGGCTTAATCGGTCAAGAGAAAACTTGGGGACTGTCCTGACCAGAATCAGGGAACTGATCAACGCCAAGAGAATGGAAGAAGATACGGATTCCACAGACAAATTCAAGAACAATACATGTGATTTTAATGCTTCTTCTCAGCTTCCGGATGGGTTTGAGAGATAA

mRNA sequence

ATGACTTCTCCAAGATCAGTCCATCTTCAGGCTCTTAACTACAAACGCCTCCTTACTTCGGGATTTGAGAGAGAGGACATAAACTTTGAGACTAACAATTCAAACATGAATCTTCCTGAATTCAATGAACACGATGATTCGTATGCACGCCGATTAGAAACCCTTGCCGCATTCAATCTTAGACTTTTTCAAGAAAGTAAGGATTATTTCCTTGAAAATTCATTTTATTCTCAATATCATATCAATGAAGACGAAGATATTCTCTTACGCTTCGCGGAATTGTCAGATACTGAAATATTGAACACTGAACTGGATGATTGTTCAAGCCTTGCAGATAAAGAAAGCTATGTCGGATCCGAGCATAATGTTGAAGAAGAAGATCAGGAAGATCTCCTTGAAGATGCATTGCCTCCTCCAAATGATATCAAGGAAGACGAAGAAGATATTCTCCTTCGGCTCATGGAAGTGTCCGTGGAGTCGGATCCTGAATTGGAAACAGAACAGAAGGAAAGCCACGGCGGATTCAAGCATAAAATTGTAAGAGAAAATCAGGAATATTTCCTTCAAGATCCAGCGTATCTTGAAGATGATATCAAGGAAGACGAAGATATCCTCCGCCGGTTGGAATCAGATGATGAATTCAAGACAGAACAGAAAAAGGAAGATGAAGATATTCTCCGTCGGTTGAACGAATCAGTCATGGAGTCGGCTCTTCAATCCGCGACCGCGGCTTATGAAATCAGGAAAGAACAAAAAGATCGGCATGTATGTTCGAATTGTCATCAAAGGCTTGCATATAAAGAAAGCGAAGCCGGATTTAAGCAAAGAATGGACGAAGCAATTCAGAAAAAACTCCACGAAGAAGCATCGCATTCTCCAGATAATATCAAGGAAGCCGAAGATCCGCTCATTCTGTTCATGGAGTCAGTTCTTGAAGCCGTGAACGCCGGTGAGAAAGAACAAATGAAAGATGTGAACGGAGATTTGAAAGGCGGATTAAAGCAGAAAATGACGACAGAGAAGGTCGATCTGTTTGATTCGGGCTCTCTTCAAGTTGTGGAGGAAATTGTGTTGAAATTTTACCAATTCATTGATCATATAATCCCGATATTGAAAGATACAGAGAAAGTGAGATTCGAAGTGCAGGATAAGTTTGAGAAGGTAAACGATCTGCTTGTGACTTGGTCTAAAATTGTGAACAAACTGATCAACGAACTGGAACGCATGAAGAATGATGGAAAAATTAATGGAAAAACTGAAAATATTCCTGAAATTTTAGTTCAACTGGAGATTAATGCACATTTGGTGGAACGATCTTTCCATCACGGCATTGGGTTTGTGTTTAATAACAAAAGTAGTAGGGAAAATGAGTTATCAGGTTGTATAAAAGGGCTTAATCGGTCAAGAGAAAACTTGGGGACTGTCCTGACCAGAATCAGGGAACTGATCAACGCCAAGAGAATGGAAGAAGATACGGATTCCACAGACAAATTCAAGAACAATACATGTGATTTTAATGCTTCTTCTCAGCTTCCGGATGGGTTTGAGAGATAA

Coding sequence (CDS)

ATGACTTCTCCAAGATCAGTCCATCTTCAGGCTCTTAACTACAAACGCCTCCTTACTTCGGGATTTGAGAGAGAGGACATAAACTTTGAGACTAACAATTCAAACATGAATCTTCCTGAATTCAATGAACACGATGATTCGTATGCACGCCGATTAGAAACCCTTGCCGCATTCAATCTTAGACTTTTTCAAGAAAGTAAGGATTATTTCCTTGAAAATTCATTTTATTCTCAATATCATATCAATGAAGACGAAGATATTCTCTTACGCTTCGCGGAATTGTCAGATACTGAAATATTGAACACTGAACTGGATGATTGTTCAAGCCTTGCAGATAAAGAAAGCTATGTCGGATCCGAGCATAATGTTGAAGAAGAAGATCAGGAAGATCTCCTTGAAGATGCATTGCCTCCTCCAAATGATATCAAGGAAGACGAAGAAGATATTCTCCTTCGGCTCATGGAAGTGTCCGTGGAGTCGGATCCTGAATTGGAAACAGAACAGAAGGAAAGCCACGGCGGATTCAAGCATAAAATTGTAAGAGAAAATCAGGAATATTTCCTTCAAGATCCAGCGTATCTTGAAGATGATATCAAGGAAGACGAAGATATCCTCCGCCGGTTGGAATCAGATGATGAATTCAAGACAGAACAGAAAAAGGAAGATGAAGATATTCTCCGTCGGTTGAACGAATCAGTCATGGAGTCGGCTCTTCAATCCGCGACCGCGGCTTATGAAATCAGGAAAGAACAAAAAGATCGGCATGTATGTTCGAATTGTCATCAAAGGCTTGCATATAAAGAAAGCGAAGCCGGATTTAAGCAAAGAATGGACGAAGCAATTCAGAAAAAACTCCACGAAGAAGCATCGCATTCTCCAGATAATATCAAGGAAGCCGAAGATCCGCTCATTCTGTTCATGGAGTCAGTTCTTGAAGCCGTGAACGCCGGTGAGAAAGAACAAATGAAAGATGTGAACGGAGATTTGAAAGGCGGATTAAAGCAGAAAATGACGACAGAGAAGGTCGATCTGTTTGATTCGGGCTCTCTTCAAGTTGTGGAGGAAATTGTGTTGAAATTTTACCAATTCATTGATCATATAATCCCGATATTGAAAGATACAGAGAAAGTGAGATTCGAAGTGCAGGATAAGTTTGAGAAGGTAAACGATCTGCTTGTGACTTGGTCTAAAATTGTGAACAAACTGATCAACGAACTGGAACGCATGAAGAATGATGGAAAAATTAATGGAAAAACTGAAAATATTCCTGAAATTTTAGTTCAACTGGAGATTAATGCACATTTGGTGGAACGATCTTTCCATCACGGCATTGGGTTTGTGTTTAATAACAAAAGTAGTAGGGAAAATGAGTTATCAGGTTGTATAAAAGGGCTTAATCGGTCAAGAGAAAACTTGGGGACTGTCCTGACCAGAATCAGGGAACTGATCAACGCCAAGAGAATGGAAGAAGATACGGATTCCACAGACAAATTCAAGAACAATACATGTGATTTTAATGCTTCTTCTCAGCTTCCGGATGGGTTTGAGAGATAA

Protein sequence

MTSPRSVHLQALNYKRLLTSGFEREDINFETNNSNMNLPEFNEHDDSYARRLETLAAFNLRLFQESKDYFLENSFYSQYHINEDEDILLRFAELSDTEILNTELDDCSSLADKESYVGSEHNVEEEDQEDLLEDALPPPNDIKEDEEDILLRLMEVSVESDPELETEQKESHGGFKHKIVRENQEYFLQDPAYLEDDIKEDEDILRRLESDDEFKTEQKKEDEDILRRLNESVMESALQSATAAYEIRKEQKDRHVCSNCHQRLAYKESEAGFKQRMDEAIQKKLHEEASHSPDNIKEAEDPLILFMESVLEAVNAGEKEQMKDVNGDLKGGLKQKMTTEKVDLFDSGSLQVVEEIVLKFYQFIDHIIPILKDTEKVRFEVQDKFEKVNDLLVTWSKIVNKLINELERMKNDGKINGKTENIPEILVQLEINAHLVERSFHHGIGFVFNNKSSRENELSGCIKGLNRSRENLGTVLTRIRELINAKRMEEDTDSTDKFKNNTCDFNASSQLPDGFER
BLAST of Lsi01G001850 vs. TrEMBL
Match: A0A0A0KNQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G521080 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.3e-55
Identity = 175/370 (47.30%), Postives = 221/370 (59.73%), Query Frame = 1

Query: 159 ESDPELETEQ----------KESHGGFKHK--IVRENQEYFLQDPAYLED-DIKEDEDIL 218
           ESDPELE +Q          ++ H GFK K  + + NQ  FL+DP Y    D++E+EDIL
Sbjct: 113 ESDPELEAQQDDMPRGLDAEEQIHRGFKRKQPLEKGNQRCFLRDPFYNPQYDVEEEEDIL 172

Query: 219 RRLESDDEFKTE----QKKEDEDILRRL---NE--------------SVMESALQSATAA 278
           RRLE D EFKTE      +EDEDILRRL   NE               + ES ++SA   
Sbjct: 173 RRLELDSEFKTEPEQNDNEEDEDILRRLELDNEMGDDNRKEEEEILIQLHESFIESALRQ 232

Query: 279 YEIRKEQKDRHVCSNCHQRLAYKESEAGFK-QRMDEAIQKKLHEEASHSPDNIKEAEDPL 338
           +   KEQ + H+ S   QRL  +ES    K QRMDEAI+K      +  PDNIKE + PL
Sbjct: 233 F---KEQSEPHIRSTSLQRLPDRESNIEIKLQRMDEAIEKD-----ASQPDNIKEDKHPL 292

Query: 339 ILFMESVLEAVNAGEKEQMKDVNGDLKGGLKQKMTTEKVDLFDSGSLQVVEEIVLKFYQF 398
           I FM+SV EA+N  +  + K++   L  GLKQK   +        +L  +EEI L+FY F
Sbjct: 293 IQFMKSVPEAMNTADYNEQKNLPVGLNYGLKQKTMLK--------TLLDLEEIGLEFYIF 352

Query: 399 IDHIIPILK------DTEKVRFEVQDKF---EKVNDLLVTWSKIVNKLINELERMKNDGK 458
           I+ IIP+L       D EKVR +++DK    EKV DLL+T SK VN++INELERMK   K
Sbjct: 353 IEDIIPMLNLNDDGDDKEKVRSKLEDKLKYVEKVKDLLLTSSKTVNEVINELERMKK--K 412

Query: 459 INGKTENIPEILVQL-EINAHLVERSFHHGIGFVFNNKSSRENELSGCIKGLNRSRENLG 484
              KTENIPEIL QL E NA+LVERSFHHGIGFVF +K+  + EL  C+K LNRSRE L 
Sbjct: 413 DEEKTENIPEILAQLMEFNAYLVERSFHHGIGFVF-DKNYTKTEL--CVKELNRSREKLE 461

BLAST of Lsi01G001850 vs. NCBI nr
Match: gi|659080968|ref|XP_008441077.1| (PREDICTED: uncharacterized protein LOC103485304 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 1.7e-56
Identity = 181/385 (47.01%), Postives = 233/385 (60.52%), Query Frame = 1

Query: 144 EDEEDILLRLMEVSVESDPELETEQ----------KESHGGFKHKIVRE--NQEYFLQDP 203
           +++EDI++R      ESDPELE +Q          ++ H GFKH  + E  NQ+ + QDP
Sbjct: 47  QNQEDIIMRECG---ESDPELEAQQDDLPRGLDAMEQIHRGFKHMQLLEKGNQKCWFQDP 106

Query: 204 AY-LEDDIKEDEDILRRLESDDEFKTE----QKKEDEDILRRL-----------NESVM- 263
            Y L+ DI+E+EDILRRLE D EFKTE      +EDEDILRRL           N+++  
Sbjct: 107 FYNLQYDIEEEEDILRRLELDSEFKTEPEQYDNEEDEDILRRLELDNEMGKTEQNDNMKE 166

Query: 264 ---------ESALQSATAAYEIRKEQKDRHVCSNCHQRLAYKESEAGFKQRMDEAIQKKL 323
                    ES ++SA   +   K+Q + H+CS C QRL  +ES+   KQRMDE+I+K  
Sbjct: 167 EEEIRIRLGESFIESALRRF---KKQPEPHICSTCLQRLPDRESDIKIKQRMDESIEK-- 226

Query: 324 HEEASHSPDNIKEAEDPLILFMESVLEAVNAGEKEQMKDVNGDLKGGLKQKMTTEKVDLF 383
             EAS  PDNIKE E PLILFM+SV EA+NA E  + KD+   L   LK+K T +     
Sbjct: 227 --EAS-QPDNIKEDEHPLILFMKSVPEAMNAAENNEQKDLRVILNYELKRKTTLK----- 286

Query: 384 DSGSLQVVEEIVLKFYQFIDHIIPI--LKDTEKVR-FEVQDKF---EKVNDLLVTWSKIV 443
               L  +EEI  +FY FI+HIIP+  L D EKVR  +++DK    EKV DLL T SK V
Sbjct: 287 ---MLLDLEEIGWEFYIFIEHIIPMLNLNDKEKVRSSKLEDKLKYVEKVKDLLQTSSKTV 346

Query: 444 NKLINELERMKNDGKINGKTENIPEILVQ-LEINAHLVERSFHHGIGFVFNNKSSRENEL 484
           NK+INELER K   K  GKTENIPEIL Q +E NA+LVERSF HGI FVF+  S++    
Sbjct: 347 NKVINELERTKK--KDEGKTENIPEILAQFMEFNAYLVERSFLHGIEFVFDTNSTKTQL- 406

BLAST of Lsi01G001850 vs. NCBI nr
Match: gi|700194157|gb|KGN49361.1| (hypothetical protein Csa_6G521080 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 1.2e-54
Identity = 175/370 (47.30%), Postives = 221/370 (59.73%), Query Frame = 1

Query: 159 ESDPELETEQ----------KESHGGFKHK--IVRENQEYFLQDPAYLED-DIKEDEDIL 218
           ESDPELE +Q          ++ H GFK K  + + NQ  FL+DP Y    D++E+EDIL
Sbjct: 113 ESDPELEAQQDDMPRGLDAEEQIHRGFKRKQPLEKGNQRCFLRDPFYNPQYDVEEEEDIL 172

Query: 219 RRLESDDEFKTE----QKKEDEDILRRL---NE--------------SVMESALQSATAA 278
           RRLE D EFKTE      +EDEDILRRL   NE               + ES ++SA   
Sbjct: 173 RRLELDSEFKTEPEQNDNEEDEDILRRLELDNEMGDDNRKEEEEILIQLHESFIESALRQ 232

Query: 279 YEIRKEQKDRHVCSNCHQRLAYKESEAGFK-QRMDEAIQKKLHEEASHSPDNIKEAEDPL 338
           +   KEQ + H+ S   QRL  +ES    K QRMDEAI+K      +  PDNIKE + PL
Sbjct: 233 F---KEQSEPHIRSTSLQRLPDRESNIEIKLQRMDEAIEKD-----ASQPDNIKEDKHPL 292

Query: 339 ILFMESVLEAVNAGEKEQMKDVNGDLKGGLKQKMTTEKVDLFDSGSLQVVEEIVLKFYQF 398
           I FM+SV EA+N  +  + K++   L  GLKQK   +        +L  +EEI L+FY F
Sbjct: 293 IQFMKSVPEAMNTADYNEQKNLPVGLNYGLKQKTMLK--------TLLDLEEIGLEFYIF 352

Query: 399 IDHIIPILK------DTEKVRFEVQDKF---EKVNDLLVTWSKIVNKLINELERMKNDGK 458
           I+ IIP+L       D EKVR +++DK    EKV DLL+T SK VN++INELERMK   K
Sbjct: 353 IEDIIPMLNLNDDGDDKEKVRSKLEDKLKYVEKVKDLLLTSSKTVNEVINELERMKK--K 412

Query: 459 INGKTENIPEILVQL-EINAHLVERSFHHGIGFVFNNKSSRENELSGCIKGLNRSRENLG 484
              KTENIPEIL QL E NA+LVERSFHHGIGFVF +K+  + EL  C+K LNRSRE L 
Sbjct: 413 DEEKTENIPEILAQLMEFNAYLVERSFHHGIGFVF-DKNYTKTEL--CVKELNRSREKLE 461

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KNQ9_CUCSA8.3e-5547.30Uncharacterized protein OS=Cucumis sativus GN=Csa_6G521080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659080968|ref|XP_008441077.1|1.7e-5647.01PREDICTED: uncharacterized protein LOC103485304 [Cucumis melo][more]
gi|700194157|gb|KGN49361.1|1.2e-5447.30hypothetical protein Csa_6G521080 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G001850.1Lsi01G001850.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 392..412
scor

The following gene(s) are paralogous to this gene:

None