Cucsa.194190 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.194190
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionSuppressor of auxin resistance 1 protein
Locationscaffold01337 : 482370 .. 482600 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCGTAGGATGCCGTTGGCCGGAATGGAAACCTCTATCATGGCTACCGACTCTGTAGAATTCATTGGCGTTTCTGTTCCTTCTTCCTCATCAAGAGAGGCTGCCATTACTTCCGTTGCTTCTCAAGCTACCACCTCATTGACTGAGGACCATACCTCCTGCGTTGTCGTAGGAGATCCTCCAACCTATCTTATCTGGTATGCTACTTTTTCCCTCACACTTTATTGA

mRNA sequence

ATGGGGCGTAGGATGCCGTTGGCCGGAATGGAAACCTCTATCATGGCTACCGACTCTGTAGAATTCATTGGCGTTTCTGTTCCTTCTTCCTCATCAAGAGAGGCTGCCATTACTTCCGTTGCTTCTCAAGCTACCACCTCATTGACTGAGGACCATACCTCCTGCGTTGTCGTAGGAGATCCTCCAACCTATCTTATCTGGTATGCTACTTTTTCCCTCACACTTTATTGA

Coding sequence (CDS)

ATGGGGCGTAGGATGCCGTTGGCCGGAATGGAAACCTCTATCATGGCTACCGACTCTGTAGAATTCATTGGCGTTTCTGTTCCTTCTTCCTCATCAAGAGAGGCTGCCATTACTTCCGTTGCTTCTCAAGCTACCACCTCATTGACTGAGGACCATACCTCCTGCGTTGTCGTAGGAGATCCTCCAACCTATCTTATCTGGTATGCTACTTTTTCCCTCACACTTTATTGA

Protein sequence

MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWYATFSLTLY*
Homology
[Close]
BLAST of Cucsa.194190 vs. TrEMBL
Match: A0A0A0LLC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G150000 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.9e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 67

[Close]
BLAST of Cucsa.194190 vs. TrEMBL
Match: I1L8X8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G055100 PE=4 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 9.6e-08
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MG    LAG E  I+ +D+V +I +SVPSSS+  AA+  VA+  TT   +D  SC V+GD
Sbjct: 1  MGTGSTLAGKEVPIVGSDAVRWIDLSVPSSSNI-AAVDGVAALPTT---DDRASCFVIGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 63

[Close]
BLAST of Cucsa.194190 vs. TrEMBL
Match: A0A0B2S403_GLYSO (Nuclear pore complex protein Nup160 OS=Glycine soja GN=glysoja_017353 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-07
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MG    LAG E  I+ +D+V +I +SVPSSS+   A+  VA+  TT   +D  SC V+GD
Sbjct: 1  MGTGSTLAGKEVPIVGSDAVRWIDLSVPSSSN--IAVDGVAALPTT---DDRASCFVIGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 62

[Close]
BLAST of Cucsa.194190 vs. TrEMBL
Match: A0A072VL71_MEDTR (Suppressor of auxin resistance 1 protein OS=Medicago truncatula GN=MTR_1g063180 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-07
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MG + PLAG E  I+ +D+V +  ++VPSSS         A     S+T+D  SC V+GD
Sbjct: 1  MGTQWPLAGKEVPIIGSDAVRWTDLTVPSSS------IFTADGGAASITDDRASCSVIGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 61

[Close]
BLAST of Cucsa.194190 vs. TrEMBL
Match: A0A072VJG2_MEDTR (Suppressor of auxin resistance 1 protein OS=Medicago truncatula GN=MTR_1g063180 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-07
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MG + PLAG E  I+ +D+V +  ++VPSSS         A     S+T+D  SC V+GD
Sbjct: 1  MGTQWPLAGKEVPIIGSDAVRWTDLTVPSSS------IFTADGGAASITDDRASCSVIGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 61

[Close]
BLAST of Cucsa.194190 vs. NCBI nr
Match: gi|700206388|gb|KGN61507.1| (hypothetical protein Csa_2G150000 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 67

[Close]
BLAST of Cucsa.194190 vs. NCBI nr
Match: gi|778668504|ref|XP_011649107.1| (PREDICTED: nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 67

[Close]
BLAST of Cucsa.194190 vs. NCBI nr
Match: gi|778668501|ref|XP_011649106.1| (PREDICTED: nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 67

[Close]
BLAST of Cucsa.194190 vs. NCBI nr
Match: gi|778668511|ref|XP_011649109.1| (PREDICTED: nuclear pore complex protein NUP160 isoform X4 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 67

[Close]
BLAST of Cucsa.194190 vs. NCBI nr
Match: gi|778668507|ref|XP_011649108.1| (PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
          MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61 PPTYLIW 68
          PPTYLIW
Sbjct: 61 PPTYLIW 67

The following BLAST results are available for this feature:
BLAST of Cucsa.194190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLC2_CUCSA9.9e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G150000 PE=4 SV=1[more]
I1L8X8_SOYBN9.6e-0852.24Uncharacterized protein OS=Glycine max GN=GLYMA_10G055100 PE=4 SV=2[more]
A0A0B2S403_GLYSO2.1e-0750.75Nuclear pore complex protein Nup160 OS=Glycine soja GN=glysoja_017353 PE=4 SV=1[more]
A0A072VL71_MEDTR2.1e-0746.27Suppressor of auxin resistance 1 protein OS=Medicago truncatula GN=MTR_1g063180 ... [more]
A0A072VJG2_MEDTR2.1e-0746.27Suppressor of auxin resistance 1 protein OS=Medicago truncatula GN=MTR_1g063180 ... [more]
BLAST of Cucsa.194190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206388|gb|KGN61507.1|1.4e-28100.00hypothetical protein Csa_2G150000 [Cucumis sativus][more]
gi|778668504|ref|XP_011649107.1|1.4e-28100.00PREDICTED: nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus][more]
gi|778668501|ref|XP_011649106.1|1.4e-28100.00PREDICTED: nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus][more]
gi|778668511|ref|XP_011649109.1|1.4e-28100.00PREDICTED: nuclear pore complex protein NUP160 isoform X4 [Cucumis sativus][more]
gi|778668507|ref|XP_011649108.1|1.4e-28100.00PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.194190.1Cucsa.194190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.194190Csa2G150000Cucumber (Chinese Long) v2cgycuB296
Cucsa.194190CSPI02G09440Wild cucumber (PI 183967)cgycpiB305
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.194190Cucumber (Chinese Long) v3cgycucB309
Cucsa.194190Melon (DHL92) v3.5.1cgymeB351
Cucsa.194190Watermelon (Charleston Gray)cgywcgB353
Cucsa.194190Watermelon (97103) v1cgywmB375
Cucsa.194190Melon (DHL92) v3.6.1cgymedB346