Cucsa.078590 (gene) Cucumber (Gy14) v1

NameCucsa.078590
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionSelf-incompatibility protein
Locationscaffold00793 : 971330 .. 971678 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTTTGTTCACGTGGTAAATGGGCTAAGCTACCAAAGTTTGGATGTGCATTGTCAATCGAAGGACGATGATTTGGGATATCATCATTTGGTTAACCATGGGGATGAATTCCAATGGAACTTTGAAGACAACTTTTGGGGAACAACCTTGTTTTGGTGTAGATTGGAAAAGCGGGATGCGTATGTCGCTTTTGAAAGCTTTTGGCCTGAGTCGAAGAACATTTGGCTTCGTGATAGATGCGGAAATCAATTAGGAACTTGTATTTGGATTGCTAAGGACGATGGAATTTATTTGAAAAACATGCTCACTAATTTTGATGAATTTGTTCACAAATGGATTCATAAGTAA

mRNA sequence

ATATTTTGTTCACGTGGTAAATGGGCTAAGCTACCAAAGTTTGGATGTGCATTGTCAATCGAAGGACGATGATTTGGGATATCATCATTTGGTTAACCATGGGGATGAATTCCAATGGAACTTTGAAGACAACTTTTGGGGAACAACCTTGTTTTGGTGTAGATTGGAAAAGCGGGATGCGTATGTCGCTTTTGAAAGCTTTTGGCCTGAGTCGAAGAACATTTGGCTTCGTGATAGATGCGGAAATCAATTAGGAACTTGTATTTGGATTGCTAAGGACGATGGAATTTATTTGAAAAACATGCTCACTAATTTTGATGAATTTGTTCACAAATGGATTCATAAGTAA

Coding sequence (CDS)

ATATTTTGTTCACGTGGTAAATGGGCTAAGCTACCAAAGTTTGGATGTGCATTGTCAATCGAAGGACGATGATTTGGGATATCATCATTTGGTTAACCATGGGGATGAATTCCAATGGAACTTTGAAGACAACTTTTGGGGAACAACCTTGTTTTGGTGTAGATTGGAAAAGCGGGATGCGTATGTCGCTTTTGAAAGCTTTTGGCCTGAGTCGAAGAACATTTGGCTTCGTGATAGATGCGGAAATCAATTAGGAACTTGTATTTGGATTGCTAAGGACGATGGAATTTATTTGAAAAACATGCTCACTAATTTTGATGAATTTGTTCACAAATGGATTCATAAGTAA

Protein sequence

YFVHVVNGLSYQSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDAYVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIHK*
BLAST of Cucsa.078590 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.0e-24
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1

Query: 1   YFVHVVNGLSY-QSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRD 60
           + VHVVN L   ++L  HC+SKDDDLG  +L   G EF W+F++NF+GTTL+WC +    
Sbjct: 19  WHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAP-GTEFNWSFKENFFGTTLYWCYMSTDQ 78

Query: 61  AYVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKW 113
            + A + FW E  + WL+ RC  +   CIWIAKDDGIY+K +  N DEF HKW
Sbjct: 79  KHAALDVFWVEGDHSWLQYRCNWK--DCIWIAKDDGIYIKIIPENRDEFSHKW 128

BLAST of Cucsa.078590 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 1

Query: 3   VHVVNGLSY-QSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEK-RDA 62
           +H+ NGLS  Q+L VHC+SKD DLG   L + G EF+WNF+ N W TTLFWC L K +  
Sbjct: 32  IHIKNGLSDGQALFVHCKSKDSDLGERTL-STGAEFKWNFKVNIWDTTLFWCYLRKPKGD 91

Query: 63  YVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKW 113
            V FE+FW E K  WLR +C   +  C WIA+D GIYLK+  TN DE +H W
Sbjct: 92  QVRFEAFWVEKKTRWLRVKCDGNI--CNWIAEDTGIYLKDNSTNEDERIHYW 140

BLAST of Cucsa.078590 vs. TrEMBL
Match: B9S577_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1722080 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 1

Query: 1   YFVHVVNGLSYQS-LDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRD 60
           + VHVVNGLS    L VHC+S D+DLG  +L N G EF W+F  NF+ TTL+WC +   D
Sbjct: 28  FHVHVVNGLSPDKILFVHCKSADNDLGARNLSN-GQEFSWSFRMNFFMTTLYWCHMAPDD 87

Query: 61  -AYVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKW 113
            +YV  + FW      +L +RCG+    CIWIAKD+G+YL+N+  N DEF H W
Sbjct: 88  HSYVDMKVFWDSQ---YLSERCGHDQ-QCIWIAKDNGVYLRNIPMNIDEFQHNW 136

BLAST of Cucsa.078590 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 59/114 (51.75%), Postives = 75/114 (65.79%), Query Frame = 1

Query: 1   YFVHVVNGLSY-QSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRD 60
           + VHVVN LS  Q+L VHC+SKDDDLG H+L   G EF W F++NF+ TTLFWC L+K+D
Sbjct: 35  WHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAA-GTEFAWKFKENFFQTTLFWCYLKKQD 94

Query: 61  AYV-AFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKW 113
            +   F  FW E    + + RC  +   CIWIAK +GIYLKN+    DE  H+W
Sbjct: 95  KFCNIFNVFWKED---FFQFRC--RYKNCIWIAKVEGIYLKNIPEGHDELWHEW 142

BLAST of Cucsa.078590 vs. TrEMBL
Match: A0A0A0KA40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-21
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 1

Query: 3   VHVVNGLSYQSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDAYV 62
           V ++N     SL VHC+SKDDDLG H + N G+ + W F++N+  TT +WC  + +  + 
Sbjct: 40  VTIINYQINASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKYWCDFQSKLGHA 99

Query: 63  AFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIH 115
           +FE FWPE +  W  DRCG+    C+W+A  DG  L N      EF H W+H
Sbjct: 100 SFEVFWPE-RGTWFSDRCGSN-SNCVWVAAHDGFSLLNAPAKTLEFQHPWLH 149

BLAST of Cucsa.078590 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 1

Query: 3   VHVVNGLSY-QSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDAY 62
           V VVNGL+  ++L +HC+SK+DDLG  +L    + F WNF +N   +T FWC + K + +
Sbjct: 43  VTVVNGLTTGETLFIHCKSKEDDLGEINL-KFRNRFSWNFGENMLHSTFFWCYMNKDNGH 102

Query: 63  VAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKW 113
           +    FW +   + L  RCG +   CIW AK DG+YL N  +  D    KW
Sbjct: 103 MNVNVFWDD---VILFHRCGWK--NCIWTAKTDGLYLWNSASGEDVLSRKW 147

BLAST of Cucsa.078590 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 80.9 bits (198), Expect = 5.8e-16
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1

Query: 3   VHVVNGLSY-QSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDAY 62
           V V NGL+  ++L +HC+SK++DLG  +L    D F WNF +N   +TLFWC + K D +
Sbjct: 43  VTVANGLTTGETLFIHCKSKENDLGDINL-KFLDRFSWNFGENMLHSTLFWCYMSKDDGH 102

Query: 63  VAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKW 113
           +  + FW +   + L  RC  +   C+W AK+DG+YL N     D    KW
Sbjct: 103 MNVKVFWDD---VILFHRCDWK--NCVWTAKNDGLYLWNSAIGEDVLSEKW 147

BLAST of Cucsa.078590 vs. TAIR10
Match: AT5G04350.1 (AT5G04350.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-11
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 1

Query: 14  LDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRD------AYVAFESF 73
           L VHC+SKDDDLG  H++  G ++++ F DN W TT F C++++         +VA+E+ 
Sbjct: 41  LKVHCRSKDDDLG-EHILKIGQDYEFTFGDNIWQTTSFSCQMDQGPNFKHHLDFVAYETS 100

Query: 74  WPESKNIWLRDRCGNQLGTCIWIAKDDGIY 98
           W ++              +C WI ++DGIY
Sbjct: 101 WSKALE-----------ASCKWIGREDGIY 118

BLAST of Cucsa.078590 vs. TAIR10
Match: AT5G04347.1 (AT5G04347.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 63.9 bits (154), Expect = 7.3e-11
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1

Query: 5   VVNGLSYQSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKR---DAY 64
           V N L+ + L V C+SKDD+LG  H++  G   + NF+DN W  TLFWC L K      +
Sbjct: 26  VKNELNNKVLGVRCRSKDDNLG-DHILRVGQMTKNNFDDNVWRRTLFWCNLWKGPDFKLH 85

Query: 65  VAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIY 98
           VAF+++    ++ W  D     L    WIA++DGIY
Sbjct: 86  VAFDAY----RSQWKADIGPRYL----WIAREDGIY 112

BLAST of Cucsa.078590 vs. TAIR10
Match: AT3G26880.1 (AT3G26880.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-10
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1

Query: 14  LDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDAYVAFESFWPESKN 73
           L VHC+SK++D+G  +L   G+   ++F+ NFWGTT FWC L K   Y  +       + 
Sbjct: 40  LKVHCKSKNNDIGVKYL-KIGEVMSFSFKTNFWGTTEFWCNLYKGPDYKRYRGI-TAYQA 99

Query: 74  IWLRDRCGNQLGTCIWIAKDDGIY 98
           I L  + G+      W+A+DDGIY
Sbjct: 100 IGLFAKDGSSYN---WLARDDGIY 118

BLAST of Cucsa.078590 vs. NCBI nr
Match: gi|778730337|ref|XP_004139721.2| (PREDICTED: uncharacterized protein LOC101204770 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-65
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 1

Query: 1   YFVHVVNGLSYQSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDA 60
           YFVHVVNGLSYQSLDVHCQSKD+DLGYHHLVNHGDEFQWNFE+NFWGTTLFWCRLEK DA
Sbjct: 19  YFVHVVNGLSYQSLDVHCQSKDNDLGYHHLVNHGDEFQWNFEENFWGTTLFWCRLEKWDA 78

Query: 61  YVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIHK 116
           YVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIHK
Sbjct: 79  YVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIHK 133

BLAST of Cucsa.078590 vs. NCBI nr
Match: gi|659124355|ref|XP_008462115.1| (PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-57
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = 1

Query: 1   YFVHVVNGLSYQSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDA 60
           YFVHVVNGLSYQSLDVHCQSK+DDLGYHHLVN GDE+QWNFE+N WGTTLFWCRLEK DA
Sbjct: 21  YFVHVVNGLSYQSLDVHCQSKNDDLGYHHLVNRGDEYQWNFEENLWGTTLFWCRLEKPDA 80

Query: 61  YVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIHK 116
           YVAFESFWPE+KN+WLRDRCGNQ GTCIW AKDDGIYL+NM TN DEFVHKWI K
Sbjct: 81  YVAFESFWPETKNVWLRDRCGNQ-GTCIWTAKDDGIYLRNMPTNVDEFVHKWIPK 134

BLAST of Cucsa.078590 vs. NCBI nr
Match: gi|659124349|ref|XP_008462111.1| (PREDICTED: pumilio homolog 15-like [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 99/115 (86.09%), Postives = 106/115 (92.17%), Query Frame = 1

Query: 1   YFVHVVNGLSYQSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDA 60
           YFVHVVNGLSY +LDVHCQSKDDDLGYH LVNHGD+FQWNF +NFWGTTLFWCRLEK DA
Sbjct: 21  YFVHVVNGLSYHNLDVHCQSKDDDLGYHCLVNHGDDFQWNFRENFWGTTLFWCRLEKLDA 80

Query: 61  YVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIHK 116
           YVAFESFWPES+N+WLR RCGNQLGTCIW AKDDGIYL+N+ TN DEFVHKWI K
Sbjct: 81  YVAFESFWPESRNLWLRYRCGNQLGTCIWTAKDDGIYLRNLSTNVDEFVHKWIPK 135

BLAST of Cucsa.078590 vs. NCBI nr
Match: gi|449443935|ref|XP_004139731.1| (PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 2.7e-55
Identity = 95/115 (82.61%), Postives = 103/115 (89.57%), Query Frame = 1

Query: 1   YFVHVVNGLSYQSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDA 60
           YFVHVVNGLS  SLDVHC+SKDDDLGYHH+VNHGD+FQWNFE+NFWGTTLFWCRLE  +A
Sbjct: 21  YFVHVVNGLSSHSLDVHCKSKDDDLGYHHMVNHGDDFQWNFEENFWGTTLFWCRLENPEA 80

Query: 61  YVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIHK 116
           Y  FESFWPES+N+WLR RCGNQLGTCIW AKDDGIYL+NM  N DEFVHKWI K
Sbjct: 81  YADFESFWPESRNLWLRYRCGNQLGTCIWTAKDDGIYLRNMPANVDEFVHKWIPK 135

BLAST of Cucsa.078590 vs. NCBI nr
Match: gi|659124347|ref|XP_008462110.1| (PREDICTED: uncharacterized protein LOC103500539 [Cucumis melo])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 98/115 (85.22%), Postives = 104/115 (90.43%), Query Frame = 1

Query: 1   YFVHVVNGLSYQSLDVHCQSKDDDLGYHHLVNHGDEFQWNFEDNFWGTTLFWCRLEKRDA 60
           YFV+VVNGLSY SLDVHCQSKDDDLGYHHLVNHGD FQWNFE+NF+GTTLFWCRLEK DA
Sbjct: 32  YFVNVVNGLSYHSLDVHCQSKDDDLGYHHLVNHGDYFQWNFEENFFGTTLFWCRLEKSDA 91

Query: 61  YVAFESFWPESKNIWLRDRCGNQLGTCIWIAKDDGIYLKNMLTNFDEFVHKWIHK 116
           YVAFESFWPES N WLRDRCGNQ GTC+WIAKDDGIYL+N+  N DE VHKWI K
Sbjct: 92  YVAFESFWPESTNRWLRDRCGNQ-GTCVWIAKDDGIYLRNIPVNVDELVHKWISK 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M5VWE5_PRUPE5.0e-2450.44Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S... [more]
A0A0A0K6N8_CUCSA1.1e-2353.57Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1[more]
B9S577_RICCO1.4e-2150.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1722080 PE=4 SV=1[more]
V4TTV3_9ROSI2.3e-2151.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1[more]
A0A0A0KA40_CUCSA3.0e-2141.96Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16295.11.5e-1640.54 S-protein homologue 1[more]
AT4G29035.15.8e-1639.64 Plant self-incompatibility protein S1 family[more]
AT5G04350.14.3e-1135.56 Plant self-incompatibility protein S1 family[more]
AT5G04347.17.3e-1140.63 Plant self-incompatibility protein S1 family[more]
AT3G26880.14.8e-1039.29 Plant self-incompatibility protein S1 family[more]
Match NameE-valueIdentityDescription
gi|778730337|ref|XP_004139721.2|2.2e-6597.39PREDICTED: uncharacterized protein LOC101204770 [Cucumis sativus][more]
gi|659124355|ref|XP_008462115.1|1.7e-5787.83PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo][more]
gi|659124349|ref|XP_008462111.1|2.2e-5786.09PREDICTED: pumilio homolog 15-like [Cucumis melo][more]
gi|449443935|ref|XP_004139731.1|2.7e-5582.61PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus][more]
gi|659124347|ref|XP_008462110.1|1.3e-5485.22PREDICTED: uncharacterized protein LOC103500539 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.078590.1Cucsa.078590.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 3..112
score: 4.2
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 3..112
score: 2.9
NoneNo IPR availablePANTHERPTHR31232:SF2GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDJ14-RELATEDcoord: 3..112
score: 2.9

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.078590MELO3C024160Melon (DHL92) v3.5.1cgymeB081
Cucsa.078590CSPI07G13760Wild cucumber (PI 183967)cgycpiB079
Cucsa.078590MELO3C024160.2Melon (DHL92) v3.6.1cgymedB080
The following gene(s) are paralogous to this gene:

None