CsaV3_7G026410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G026410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionexopolygalacturonase-like
Locationchr7 : 15871439 .. 15872285 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGAAATCTTAGTCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCGATGACATCACCGGCACTCAAAATCGTCTCAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTACAGAAGCACCCCGGCGTCTTGGCTTCAATACTCTTTCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAAAATGGTGTGTCAATTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGTGAGAAATATCAACACACACTAACTTCAAACCTTTTAATTTGAGTTAATTATCTGTAAATGGATGACTATAGGGAATTGTATATATTTTTTGCTATTAAATTCTATCGTTATATTATATTTTGGTGGATATTGATGGTACAATTATTTCAACATTTTTTTGGGAAAAAGAGTTATAATTTTTTTATTTTTTTTCCATTTTGAAGGCATTCATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGCCCGGTGACTTTCGCTGGTCCTTGCAAAAGCTTTCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCGTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCTGTTTGGTCTTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTAA

mRNA sequence

ATGACAAGAAATCTTAGTCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCGATGACATCACCGGCACTCAAAATCGTCTCAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTACAGAAGCACCCCGGCGTCTTGGCTTCAATACTCTTTCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAAAATGGTGTGTCAATTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGCATTCATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGCCCGGTGACTTTCGCTGGTCCTTGCAAAAGCTTTCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCGTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCTGTTTGGTCTTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTAA

Coding sequence (CDS)

ATGACAAGAAATCTTAGTCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCGATGACATCACCGGCACTCAAAATCGTCTCAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTACAGAAGCACCCCGGCGTCTTGGCTTCAATACTCTTTCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAAAATGGTGTGTCAATTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGCATTCATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGCCCGGTGACTTTCGCTGGTCCTTGCAAAAGCTTTCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCGTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCTGTTTGGTCTTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTAA

Protein sequence

MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTLSNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL
Homology
[Close]
BLAST of CsaV3_7G026410 vs. NCBI nr
Match: KGN44638.1 (hypothetical protein Csa_7G353000 [Cucumis sativus])

HSP 1 Score: 435.3 bits (1118), Expect = 1.2e-118
Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRNLSLIQILLLVFAWQCCAVVF DITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSVEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 214
           VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 213

[Close]
BLAST of CsaV3_7G026410 vs. NCBI nr
Match: XP_011656188.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 5.4e-106
Identity = 188/206 (91.26%), Postives = 197/206 (95.63%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRNLSLIQI+LL FAWQ CAV+F+DITGTQN LKGIVPTTN+QFLRP EAPR LGFNTL
Sbjct: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
            +IGGTVNDI ANVDLNENG S+FDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKS+PITLENQGTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSLEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPI 207
           VFDGQGLSVW YNDCKKNNLCQLLPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

[Close]
BLAST of CsaV3_7G026410 vs. NCBI nr
Match: KGN44961.1 (hypothetical protein Csa_7G398720 [Cucumis sativus])

HSP 1 Score: 391.0 bits (1003), Expect = 2.7e-105
Identity = 186/210 (88.57%), Postives = 196/210 (93.33%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRN SLIQILLLVFA QCCAV+FDD+TGTQN LKGIVP  N+QFLRP E+PR LGF+TL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
            NIGG VNDIKANVDLNENG S+FDVTKHGAK +G+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIY 211
           VFDGQGLSVW YNDCKKNNLCQLLPIVTI+
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIF 210

[Close]
BLAST of CsaV3_7G026410 vs. NCBI nr
Match: KGN50738.1 (hypothetical protein Csa_5G222970 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 161/174 (92.53%), Postives = 167/174 (95.98%), Query Frame = 0 

Query: 33  RLKGIVPTTNEQFLRPTEAPRRLGFNTLSNIGGTVNDIKANVDLNENGVSIFDVTKHGAK 92
           RL GIVPTTN+QFLRP EAPR LGFNTL +IGGTVNDI ANVDLNENG S+FDVTKHGAK
Sbjct: 5   RLYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAK 64

Query: 93  ANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVK 152
           A+GKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKS+PITLENQGTVK
Sbjct: 65  ADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVK 124

Query: 153 ATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQLLPI 207
           ATTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVW YNDCKKNNLCQLLPI
Sbjct: 125 ATTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of CsaV3_7G026410 vs. NCBI nr
Match: KGN44960.1 (hypothetical protein Csa_7G398220 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 158/192 (82.29%), Postives = 167/192 (86.98%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCC---AVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGF 60
           MTRN SLIQILLLVFAW+CC   A +F D   TQ  L GIVP  NEQFLRP EAP  LGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  NTLSNI-GGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120
           +TL NI GGTVNDIK NVDLNENG  +FDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS EWFS+ED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLS 189
           TGSGVFDGQG+S
Sbjct: 181 TGSGVFDGQGVS 192

[Close]
BLAST of CsaV3_7G026410 vs. TAIR10
Match: AT1G02790.1 (polygalacturonase 4)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 77  NENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAG 136
           N    +++D+TK GA  +G T+  +AF+ TWI  C + V PA  L+P+GTFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQLLP 206
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]
BLAST of CsaV3_7G026410 vs. TAIR10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-24
Identity = 51/122 (41.80%), Postives = 69/122 (56.56%), Query Frame = 0 

Query: 83  IFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFP 142
           +F+V +HGAK +GKTD+A AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   W +NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of CsaV3_7G026410 vs. TAIR10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-24
Identity = 51/122 (41.80%), Postives = 69/122 (56.56%), Query Frame = 0 

Query: 83  IFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFP 142
           +F+V +HGAK +GKTD+A AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   W +NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of CsaV3_7G026410 vs. TAIR10
Match: AT2G26620.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 0 

Query: 83  IFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFP 142
           +F+V +HG+K +GKTD+  AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 202
           I     GT+ A  + +      W +   I    ++GSG  DGQG   W  NDC KN  C 
Sbjct: 90  IEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 203 LLPI 207
            L I
Sbjct: 150 KLAI 152

[Close]
BLAST of CsaV3_7G026410 vs. TAIR10
Match: AT4G13760.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 5.3e-23
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 0 

Query: 83  IFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFP 142
           +F+V +HG+K++GKTD+   F + W  ACR   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  MFNVQRHGSKSDGKTDNTNVFTSVWNRACRRKSGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 202
           I     GT+ A  + +      W   + I    ++GSG  DGQG   W  NDC KN  C 
Sbjct: 90  IEFLIDGTLLAPANPNNIKQDTWIKFKYINDLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of CsaV3_7G026410 vs. Swiss-Prot
Match: sp|P49062|PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-27
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 77  NENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAG 136
           N    +++D+TK GA  +G T+  +AF+ TWI  C + V PA  L+P+GTFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQLLP 206
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]
BLAST of CsaV3_7G026410 vs. Swiss-Prot
Match: sp|P35339|PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25
Identity = 56/123 (45.53%), Postives = 73/123 (59.35%), Query Frame = 0 

Query: 84  FDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPI 143
           FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G FLVGP+ F GPCK   +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGPLNFTGPCKG-DV 100

Query: 144 TLENQGTVKATTDISAYSS-PEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 203
           T++  G + ATTD+S Y     W  +  +   ++TG G  DGQG +VWS N C K   C+
Sbjct: 101 TIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYDCK 160

Query: 204 LLP 206
           +LP
Sbjct: 161 ILP 161

[Close]
BLAST of CsaV3_7G026410 vs. Swiss-Prot
Match: sp|P26216|PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 0 

Query: 84  FDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPI 143
           FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G FLVG + F GPCK   +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQLNFTGPCKG-DV 100

Query: 144 TLENQGTVKATTDISAYSS-PEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 203
           T++  G + ATTD+S Y     W  +  +   ++TG G  DGQG +VWS N C K   C+
Sbjct: 101 TIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCK 160

Query: 204 LLP 206
           +LP
Sbjct: 161 ILP 161

[Close]
BLAST of CsaV3_7G026410 vs. Swiss-Prot
Match: sp|P35338|PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 0 

Query: 84  FDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPI 143
           FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G FLVG + F GPCK   +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQLNFTGPCKG-DV 100

Query: 144 TLENQGTVKATTDISAYSS-PEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 203
           T++  G + ATTD+S Y     W  +  +   ++TG G  DGQG +VWS N C K   C+
Sbjct: 101 TIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCK 160

Query: 204 LLP 206
           +LP
Sbjct: 161 ILP 161

[Close]
BLAST of CsaV3_7G026410 vs. Swiss-Prot
Match: sp|Q39766|PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.1e-21
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 0 

Query: 86  VTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPITL 145
           V K GAKA+GKTD ++ F+  W  AC  +V P+  +IP+GT+L+  V   GPCK+ PI +
Sbjct: 32  VAKFGAKADGKTDLSKPFLDAWKEACA-SVTPSTVVIPKGTYLLSKVNLEGPCKA-PIEI 91

Query: 146 ENQGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQLLP 205
             QGT++A  D SA+  P W     +  F + G G+FDGQG   +  N C+       LP
Sbjct: 92  NVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLP 150

Query: 206 I 207
           +
Sbjct: 152 V 150

[Close]
BLAST of CsaV3_7G026410 vs. TrEMBL
Match: tr|A0A0A0K588|A0A0A0K588_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 8.2e-119
Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRNLSLIQILLLVFAWQCCAVVF DITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSVEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 214
           VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 213

[Close]
BLAST of CsaV3_7G026410 vs. TrEMBL
Match: tr|A0A0A0KAZ2|A0A0A0KAZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 1.8e-105
Identity = 186/210 (88.57%), Postives = 196/210 (93.33%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRN SLIQILLLVFA QCCAV+FDD+TGTQN LKGIVP  N+QFLRP E+PR LGF+TL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
            NIGG VNDIKANVDLNENG S+FDVTKHGAK +G+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIY 211
           VFDGQGLSVW YNDCKKNNLCQLLPIVTI+
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIF 210

[Close]
BLAST of CsaV3_7G026410 vs. TrEMBL
Match: tr|A0A0A0KMA6|A0A0A0KMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 8.0e-90
Identity = 161/174 (92.53%), Postives = 167/174 (95.98%), Query Frame = 0 

Query: 33  RLKGIVPTTNEQFLRPTEAPRRLGFNTLSNIGGTVNDIKANVDLNENGVSIFDVTKHGAK 92
           RL GIVPTTN+QFLRP EAPR LGFNTL +IGGTVNDI ANVDLNENG S+FDVTKHGAK
Sbjct: 5   RLYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAK 64

Query: 93  ANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVK 152
           A+GKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKS+PITLENQGTVK
Sbjct: 65  ADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVK 124

Query: 153 ATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQLLPI 207
           ATTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVW YNDCKKNNLCQLLPI
Sbjct: 125 ATTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of CsaV3_7G026410 vs. TrEMBL
Match: tr|A0A0A0K5I2|A0A0A0K5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398220 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 9.4e-83
Identity = 158/192 (82.29%), Postives = 167/192 (86.98%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCC---AVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGF 60
           MTRN SLIQILLLVFAW+CC   A +F D   TQ  L GIVP  NEQFLRP EAP  LGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  NTLSNI-GGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120
           +TL NI GGTVNDIK NVDLNENG  +FDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS EWFS+ED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLS 189
           TGSGVFDGQG+S
Sbjct: 181 TGSGVFDGQGVS 192

[Close]
BLAST of CsaV3_7G026410 vs. TrEMBL
Match: tr|A0A1S3BRD3|A0A1S3BRD3_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103492867 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 3.5e-77
Identity = 146/207 (70.53%), Postives = 161/207 (77.78%), Query Frame = 0 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           +TR++ L QILL VFAWQCC  V        N    IV T N+Q   P  AP  LG  TL
Sbjct: 3   ITRDIGLFQILLWVFAWQCCDKVSAITNDIANLNYEIVSTINQQLPSPVAAPGPLGIETL 62

Query: 61  SNIGGTVN-DIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAK 120
            ++   VN DI  N DLN NG S+F VTKHGAKA+GKTDDAQAF+TTWI ACRNTVGPAK
Sbjct: 63  PDLDNMVNDDINTNNDLNGNGGSVFHVTKHGAKADGKTDDAQAFVTTWIEACRNTVGPAK 122

Query: 121 FLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSVEDITGFILTGS 180
            LIP+GT+LVGPVT AGPCKSFPITLENQGTVKATTDIS YSSPEWFS+EDITGFILTGS
Sbjct: 123 ILIPEGTYLVGPVTLAGPCKSFPITLENQGTVKATTDISQYSSPEWFSIEDITGFILTGS 182

Query: 181 GVFDGQGLSVWSYNDCKKNNLCQLLPI 207
           GVFDGQG++ W YNDCK NN+CQLLPI
Sbjct: 183 GVFDGQGVAAWPYNDCKNNNICQLLPI 209

The following BLAST results are available for this feature:
BLAST of CsaV3_7G026410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44638.11.2e-11899.06hypothetical protein Csa_7G353000 [Cucumis sativus][more]
XP_011656188.15.4e-10691.26PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
KGN44961.12.7e-10588.57hypothetical protein Csa_7G398720 [Cucumis sativus][more]
KGN50738.11.2e-8992.53hypothetical protein Csa_5G222970 [Cucumis sativus][more]
KGN44960.11.4e-8282.29hypothetical protein Csa_7G398220 [Cucumis sativus][more]
BLAST of CsaV3_7G026410 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02790.11.4e-2846.51polygalacturonase 4[more]
AT2G15460.14.8e-2441.80Pectin lyase-like superfamily protein[more]
AT2G15450.14.8e-2441.80Pectin lyase-like superfamily protein[more]
AT2G26620.11.1e-2340.32Pectin lyase-like superfamily protein[more]
AT4G13760.15.3e-2340.16Pectin lyase-like superfamily protein[more]
BLAST of CsaV3_7G026410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49062|PGLR1_ARATH2.6e-2746.51Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ... [more]
sp|P35339|PGLR3_MAIZE2.4e-2545.53Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1[more]
sp|P26216|PGLR1_MAIZE2.1e-2444.72Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1[more]
sp|P35338|PGLR2_MAIZE2.1e-2444.72Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1[more]
sp|Q39766|PGLR_GOSBA8.1e-2140.50Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1[more]
BLAST of CsaV3_7G026410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K588|A0A0A0K588_CUCSA8.2e-11999.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1[more]
tr|A0A0A0KAZ2|A0A0A0KAZ2_CUCSA1.8e-10588.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1[more]
tr|A0A0A0KMA6|A0A0A0KMA6_CUCSA8.0e-9092.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1[more]
tr|A0A0A0K5I2|A0A0A0K5I2_CUCSA9.4e-8382.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398220 PE=3 SV=1[more]
tr|A0A1S3BRD3|A0A1S3BRD3_CUCME3.5e-7770.53exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103492867 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
IPR012334Pectin_lyas_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G026410.1CsaV3_7G026410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 72..212
e-value: 7.7E-27
score: 96.2
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 115..207
e-value: 6.5E-14
score: 51.6
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 66..206
NoneNo IPR availablePANTHERPTHR31375:SF17EXOPOLYGALACTURONASE CLONE GBGE184coord: 66..206
IPR011050Pectin lyase fold/virulence factorSUPERFAMILYSSF51126Pectin lyase-likecoord: 83..199

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G026410CSPI07G14680Wild cucumber (PI 183967)cpicucB414
CsaV3_7G026410CsGy7G013170Cucumber (Gy14) v2cgybcucB347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G026410Cucumber (Chinese Long) v3cuccucB159
CsaV3_7G026410Silver-seed gourdcarcucB0013
CsaV3_7G026410Silver-seed gourdcarcucB0102
CsaV3_7G026410Cucumber (Gy14) v2cgybcucB158
CsaV3_7G026410Cucumber (Gy14) v1cgycucB080
CsaV3_7G026410Cucurbita maxima (Rimu)cmacucB0457
CsaV3_7G026410Cucurbita maxima (Rimu)cmacucB0773
CsaV3_7G026410Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G026410Cucurbita moschata (Rifu)cmocucB0450
CsaV3_7G026410Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G026410Cucurbita pepo (Zucchini)cpecucB0182
CsaV3_7G026410Cucurbita pepo (Zucchini)cpecucB0416
CsaV3_7G026410Cucurbita pepo (Zucchini)cpecucB0951
CsaV3_7G026410Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G026410Bottle gourd (USVL1VR-Ls)cuclsiB560
CsaV3_7G026410Melon (DHL92) v3.5.1cucmeB539
CsaV3_7G026410Melon (DHL92) v3.6.1cucmedB527
CsaV3_7G026410Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G026410Watermelon (Charleston Gray)cucwcgB596
CsaV3_7G026410Watermelon (97103) v1cucwmB592
CsaV3_7G026410Watermelon (97103) v2cucwmbB573
CsaV3_7G026410Watermelon (97103) v2cucwmbB593
CsaV3_7G026410Wax gourdcucwgoB731