CsaV3_7G025990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G025990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 15468706 .. 15469192 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTTGAGAAACAAATACCGTCCAGAAAGCTTTCCAAAAACTGCATAAAAAGAGCTGAAGCTGAAAAAACAGAAACAGAGTAGGTAAAAGAAGGCGAAAAGGGAGCAAAAAAAAAAAAAAAAAAGAAAACCAGAATAACACAGATGGGCAAGATTAAAAAGTGAAGAAATTTGCAAAACTGGGACAACCCATGTAAGAATCGAGGGAAATTGATGATGGGTTGGGGTGGAAAGAGGGGAAATTGAATCAGGTGTCCATTTGAAGGGGCAGAGTAGGTGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAAGGATTAAAGCTATGTCGTCTTCTGGATCATGGTTGGATCATGGTCAAGATTTGATGGAGGAATTGAAGAAATTAAAAGGGCAAAAAAAAGAAGAAGATGAAAACACATGCGGCAATGATGTGGTTGACACAGTGTTGCCGCTAAAAAAGCAGAACGTGATATGA

mRNA sequence

ATGAGAGTTGAGAAACAAATACCGTCCAGAAAGCTTTCCAAAAACTGCATAAAAAGAGCTGAAGCTGAAAAAACAGAAACAGAAGGGGAAATTGAATCAGGTGTCCATTTGAAGGGGCAGAGTAGGTGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAAGGATTAAAGCTATGTCGTCTTCTGGATCATGGTTGGATCATGGTCAAGATTTGATGGAGGAATTGAAGAAATTAAAAGGGCAAAAAAAAGAAGAAGATGAAAACACATGCGGCAATGATGTGGTTGACACAGTGTTGCCGCTAAAAAAGCAGAACGTGATATGA

Coding sequence (CDS)

ATGAGAGTTGAGAAACAAATACCGTCCAGAAAGCTTTCCAAAAACTGCATAAAAAGAGCTGAAGCTGAAAAAACAGAAACAGAAGGGGAAATTGAATCAGGTGTCCATTTGAAGGGGCAGAGTAGGTGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAAGGATTAAAGCTATGTCGTCTTCTGGATCATGGTTGGATCATGGTCAAGATTTGATGGAGGAATTGAAGAAATTAAAAGGGCAAAAAAAAGAAGAAGATGAAAACACATGCGGCAATGATGTGGTTGACACAGTGTTGCCGCTAAAAAAGCAGAACGTGATATGA

Protein sequence

MRVEKQIPSRKLSKNCIKRAEAEKTETEGEIESGVHLKGQSRWRKRKKKKKKKKKTRIKAMSSSGSWLDHGQDLMEELKKLKGQKKEEDENTCGNDVVDTVLPLKKQNVI
Homology
[Close]
BLAST of CsaV3_7G025990 vs. NCBI nr
Match: KGN44598.1 (hypothetical protein Csa_7G339700 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MRVEKQIPSRKLSKNCIKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MRVEKQIPSRKLSKNCIKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MRVEKQIPSRKLSKNCIKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXSWLDHGQDLMEELKKLKGQKKEEDENTCGNDVVDTVLPLKKQNVI 111
           XXXXXSWLDHGQDLMEELKKLKGQKKEEDENTCGNDVVDTVLPLKKQNVI
Sbjct: 61  XXXXXSWLDHGQDLMEELKKLKGQKKEEDENTCGNDVVDTVLPLKKQNVI 110

[Close]
BLAST of CsaV3_7G025990 vs. TrEMBL
Match: tr|A0A0A0K561|A0A0A0K561_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G339700 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MRVEKQIPSRKLSKNCIKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MRVEKQIPSRKLSKNCIKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MRVEKQIPSRKLSKNCIKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXSWLDHGQDLMEELKKLKGQKKEEDENTCGNDVVDTVLPLKKQNVI 111
           XXXXXSWLDHGQDLMEELKKLKGQKKEEDENTCGNDVVDTVLPLKKQNVI
Sbjct: 61  XXXXXSWLDHGQDLMEELKKLKGQKKEEDENTCGNDVVDTVLPLKKQNVI 110

The following BLAST results are available for this feature:
BLAST of CsaV3_7G025990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44598.11.7e-23100.00hypothetical protein Csa_7G339700 [Cucumis sativus][more]
BLAST of CsaV3_7G025990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G025990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G025990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K561|A0A0A0K561_CUCSA1.1e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G339700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G025990.1CsaV3_7G025990.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..59

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G025990CSPI07G14260Wild cucumber (PI 183967)cpicucB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G025990Cucumber (Chinese Long) v3cuccucB159
CsaV3_7G025990Silver-seed gourdcarcucB0102
CsaV3_7G025990Silver-seed gourdcarcucB0459
CsaV3_7G025990Cucumber (Gy14) v2cgybcucB158
CsaV3_7G025990Cucumber (Gy14) v2cgybcucB347
CsaV3_7G025990Cucumber (Gy14) v1cgycucB080
CsaV3_7G025990Cucurbita maxima (Rimu)cmacucB0457
CsaV3_7G025990Cucurbita maxima (Rimu)cmacucB0773
CsaV3_7G025990Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G025990Cucurbita moschata (Rifu)cmocucB0450
CsaV3_7G025990Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G025990Cucurbita pepo (Zucchini)cpecucB0182
CsaV3_7G025990Cucurbita pepo (Zucchini)cpecucB0416
CsaV3_7G025990Cucurbita pepo (Zucchini)cpecucB0419
CsaV3_7G025990Cucurbita pepo (Zucchini)cpecucB0951
CsaV3_7G025990Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G025990Bottle gourd (USVL1VR-Ls)cuclsiB560
CsaV3_7G025990Melon (DHL92) v3.5.1cucmeB539
CsaV3_7G025990Melon (DHL92) v3.6.1cucmedB527
CsaV3_7G025990Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G025990Watermelon (Charleston Gray)cucwcgB596
CsaV3_7G025990Watermelon (97103) v1cucwmB592
CsaV3_7G025990Watermelon (97103) v2cucwmbB573
CsaV3_7G025990Watermelon (97103) v2cucwmbB593