CsaV3_7G018680 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G018680
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 8608459 .. 8608719 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTCCAAGTCAGATCAATTTCTATCCAAAGGTTTTCAAGATACAGAAGCCAAACACTAAAGGACTAAAGATGAGTGAATTGCAAAAGGTTTCAGTCAAACTGAAAAACACAAAGTCCAACAAAGCAATCCAATTTTTCAACACAGGAAAAAGAAAACCCGAAATCCAAGGAAGTGTAAGCAGTGAAAGCAAGCAAAAAAGGGAAACACATCACAAAAGTCCCCGATCGAGTCCACAGAATTCAAGAAGAAGATGA

mRNA sequence

ATGGAAACTCCAAGTCAGATCAATTTCTATCCAAAGGTTTTCAAGATACAGAAGCCAAACACTAAAGGACTAAAGATGAGTGAATTGCAAAAGGTTTCAGTCAAACTGAAAAACACAAAGTCCAACAAAGCAATCCAATTTTTCAACACAGGAAAAAGAAAACCCGAAATCCAAGGAAGTGTAAGCAGTGAAAGCAAGCAAAAAAGGGAAACACATCACAAAAGTCCCCGATCGAGTCCACAGAATTCAAGAAGAAGATGA

Coding sequence (CDS)

ATGGAAACTCCAAGTCAGATCAATTTCTATCCAAAGGTTTTCAAGATACAGAAGCCAAACACTAAAGGACTAAAGATGAGTGAATTGCAAAAGGTTTCAGTCAAACTGAAAAACACAAAGTCCAACAAAGCAATCCAATTTTTCAACACAGGAAAAAGAAAACCCGAAATCCAAGGAAGTGTAAGCAGTGAAAGCAAGCAAAAAAGGGAAACACATCACAAAAGTCCCCGATCGAGTCCACAGAATTCAAGAAGAAGATGA

Protein sequence

METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGSVSSESKQKRETHHKSPRSSPQNSRRR

Homology

[Close]

BLAST of CsaV3_7G018680 vs. NCBI nr
Match: KGN59089.1 (hypothetical protein Csa_3G765080 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 8.2e-37
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS 60
          METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS
Sbjct: 1  METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS 60

Query: 61 VSSESKQKRETHHKSPRSSPQNSRRR 87
          VSSESKQKRETHHKSPRSSPQNSRRR
Sbjct: 61 VSSESKQKRETHHKSPRSSPQNSRRR 86

[Close]

BLAST of CsaV3_7G018680 vs. TrEMBL
Match: tr|A0A0A0LDY0|A0A0A0LDY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G765080 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.4e-37
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS 60
          METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS
Sbjct: 1  METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS 60

Query: 61 VSSESKQKRETHHKSPRSSPQNSRRR 87
          VSSESKQKRETHHKSPRSSPQNSRRR
Sbjct: 61 VSSESKQKRETHHKSPRSSPQNSRRR 86

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59089.1	8.2e-37	100.00	hypothetical protein Csa_3G765080 [Cucumis sativus]	[more]

BLAST of CsaV3_7G018680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDY0\|A0A0A0LDY0_CUCSA	5.4e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G765080 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G018680.1	CsaV3_7G018680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G018680	Bhi09G001445	Wax gourd	cucwgoB734

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G018680	Silver-seed gourd	carcucB0924
CsaV3_7G018680	Silver-seed gourd	carcucB0946
CsaV3_7G018680	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G018680	Cucumber (Gy14) v1	cgycucB431
CsaV3_7G018680	Cucurbita maxima (Rimu)	cmacucB0052
CsaV3_7G018680	Cucurbita maxima (Rimu)	cmacucB0585
CsaV3_7G018680	Cucurbita moschata (Rifu)	cmocucB0038
CsaV3_7G018680	Cucurbita moschata (Rifu)	cmocucB0575
CsaV3_7G018680	Cucurbita pepo (Zucchini)	cpecucB0733
CsaV3_7G018680	Cucurbita pepo (Zucchini)	cpecucB0991
CsaV3_7G018680	Wild cucumber (PI 183967)	cpicucB196
CsaV3_7G018680	Bottle gourd (USVL1VR-Ls)	cuclsiB539
CsaV3_7G018680	Melon (DHL92) v3.5.1	cucmeB556
CsaV3_7G018680	Melon (DHL92) v3.6.1	cucmedB528
CsaV3_7G018680	Watermelon (Charleston Gray)	cucwcgB549
CsaV3_7G018680	Watermelon (97103) v1	cucwmB594
CsaV3_7G018680	Watermelon (97103) v2	cucwmbB595