CsaV3_7G018370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G018370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 8256083 .. 8256417 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCGAAGGTATCAGGTGATAACTCTTGCGAAAGGGGCTCAAGTGCTATGAGAATTCCTAATGTCCCACCACTGGTTTGCATATTTTCCTTCTTTAATAATTTTCTTTTATTATTAATCTTCTTCATGAGTGATTTATCCATTGCTTATTTTTGCAGTCACCTTTAGACCACCATCTTGAAGGGCTTGTAGATGTAGACAGTGATGAATCACTAACTGGTCCTCATATGGCTGACACGACTATCGAGAAAGTTGGTATTTTGAAGACACCAGCTGCAAAACCAGTCGAACTATCCTTACATCTCTCTGCTCTTCTCGAGAAGATTCGTTGA

mRNA sequence

ATGAAAGCGAAGGTATCAGGTGATAACTCTTGCGAAAGGGGCTCAAGTGCTATGAGAATTCCTAATGTCCCACCACTGTCACCTTTAGACCACCATCTTGAAGGGCTTGTAGATGTAGACAGTGATGAATCACTAACTGGTCCTCATATGGCTGACACGACTATCGAGAAAGTTGGTATTTTGAAGACACCAGCTGCAAAACCAGTCGAACTATCCTTACATCTCTCTGCTCTTCTCGAGAAGATTCGTTGA

Coding sequence (CDS)

ATGAAAGCGAAGGTATCAGGTGATAACTCTTGCGAAAGGGGCTCAAGTGCTATGAGAATTCCTAATGTCCCACCACTGTCACCTTTAGACCACCATCTTGAAGGGCTTGTAGATGTAGACAGTGATGAATCACTAACTGGTCCTCATATGGCTGACACGACTATCGAGAAAGTTGGTATTTTGAAGACACCAGCTGCAAAACCAGTCGAACTATCCTTACATCTCTCTGCTCTTCTCGAGAAGATTCGTTGA

Protein sequence

MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGILKTPAAKPVELSLHLSALLEKIR

Homology

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: KGN44065.1 (hypothetical protein Csa_7G160510 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.5e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 60
          MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI
Sbjct: 1  MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 60

Query: 61 LKTPAAKPVELSLHLSALLEKIR 84
          LKTPAAKPVELSLHLSALLEKIR
Sbjct: 61 LKTPAAKPVELSLHLSALLEKIR 83

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: KGN54752.1 (hypothetical protein Csa_4G444640 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 37 VDVDSDESLTGPHMADTTIEKVGILKTPAAKPVELSLHLSALLEKIR 84
          +DV SDE LTGPHMADTTIE+V ILKTPAAK VE+SL  SALLE+IR
Sbjct: 1  MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIR 47

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: ADN34118.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 36  LVDVDSDESLTGPHMADTTIEKVGILKTPAAKPVELSLHLSALLEKIR 84
           L++ DSDESLTGPH+ D+  E+VG  KTP  KP E SL  SAL E+IR
Sbjct: 388 LIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIR 435

[Close]

BLAST of CsaV3_7G018370 vs. NCBI nr
Match: KGN65353.1 (hypothetical protein Csa_1G368490 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 50 MADTTIEKVGILKTPAAKPVELSLHLSALLEKIR 84
          MADT IE+VGILKTPA KPVE+SLH SALLE+IR
Sbjct: 1  MADTAIEEVGILKTPATKPVEVSLHPSALLEEIR 34

[Close]

BLAST of CsaV3_7G018370 vs. TrEMBL
Match: tr|A0A0A0K338|A0A0A0K338_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G160510 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 60
          MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI
Sbjct: 1  MKAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGI 60

Query: 61 LKTPAAKPVELSLHLSALLEKIR 84
          LKTPAAKPVELSLHLSALLEKIR
Sbjct: 61 LKTPAAKPVELSLHLSALLEKIR 83

[Close]

BLAST of CsaV3_7G018370 vs. TrEMBL
Match: tr|A0A0A0L2B5|A0A0A0L2B5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G444640 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 37 VDVDSDESLTGPHMADTTIEKVGILKTPAAKPVELSLHLSALLEKIR 84
          +DV SDE LTGPHMADTTIE+V ILKTPAAK VE+SL  SALLE+IR
Sbjct: 1  MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIR 47

[Close]

BLAST of CsaV3_7G018370 vs. TrEMBL
Match: tr|E5GCB9|E5GCB9_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-06
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 36  LVDVDSDESLTGPHMADTTIEKVGILKTPAAKPVELSLHLSALLEKIR 84
           L++ DSDESLTGPH+ D+  E+VG  KTP  KP E SL  SAL E+IR
Sbjct: 388 LIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIR 435

[Close]

BLAST of CsaV3_7G018370 vs. TrEMBL
Match: tr|A0A0A0LU69|A0A0A0LU69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G368490 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-05
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 50 MADTTIEKVGILKTPAAKPVELSLHLSALLEKIR 84
          MADT IE+VGILKTPA KPVE+SLH SALLE+IR
Sbjct: 1  MADTAIEEVGILKTPATKPVEVSLHPSALLEEIR 34

[Close]

BLAST of CsaV3_7G018370 vs. TrEMBL
Match: tr|A0A0A0KYX3|A0A0A0KYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083520 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.0e-03
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 50 MADTTIEKVGILKTPAAKPVELSLHLSALLEKIR 84
          M DT IEK+GILKTP  KPVELSL  SALLE+IR
Sbjct: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIR 34

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44065.1	2.5e-38	100.00	hypothetical protein Csa_7G160510 [Cucumis sativus]	[more]
KGN54752.1	3.1e-09	78.72	hypothetical protein Csa_4G444640 [Cucumis sativus]	[more]
ADN34118.1	7.2e-06	60.42	hypothetical protein [Cucumis melo subsp. melo]	[more]
KGN65353.1	4.7e-05	82.35	hypothetical protein Csa_1G368490 [Cucumis sativus]	[more]

BLAST of CsaV3_7G018370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K338\|A0A0A0K338_CUCSA	1.6e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G160510 PE=4 SV=1	[more]
tr\|A0A0A0L2B5\|A0A0A0L2B5_CUCSA	2.1e-09	78.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G444640 PE=4 SV=1	[more]
tr\|E5GCB9\|E5GCB9_CUCME	4.8e-06	60.42	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0LU69\|A0A0A0LU69_CUCSA	3.1e-05	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G368490 PE=4 SV=1	[more]
tr\|A0A0A0KYX3\|A0A0A0KYX3_CUCSA	1.0e-03	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083520 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G018370.1	CsaV3_7G018370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G018370	Wax gourd	cucwgoB734
CsaV3_7G018370	Silver-seed gourd	carcucB0924
CsaV3_7G018370	Silver-seed gourd	carcucB0946
CsaV3_7G018370	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G018370	Cucurbita maxima (Rimu)	cmacucB0052
CsaV3_7G018370	Cucurbita maxima (Rimu)	cmacucB0585
CsaV3_7G018370	Cucurbita moschata (Rifu)	cmocucB0038
CsaV3_7G018370	Cucurbita moschata (Rifu)	cmocucB0575
CsaV3_7G018370	Cucurbita pepo (Zucchini)	cpecucB0733
CsaV3_7G018370	Cucurbita pepo (Zucchini)	cpecucB0991
CsaV3_7G018370	Wild cucumber (PI 183967)	cpicucB418
CsaV3_7G018370	Bottle gourd (USVL1VR-Ls)	cuclsiB539
CsaV3_7G018370	Melon (DHL92) v3.5.1	cucmeB556
CsaV3_7G018370	Melon (DHL92) v3.6.1	cucmedB528
CsaV3_7G018370	Watermelon (Charleston Gray)	cucwcgB549
CsaV3_7G018370	Watermelon (97103) v1	cucwmB594
CsaV3_7G018370	Watermelon (97103) v2	cucwmbB595