CsaV3_6G051260 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G051260
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 29840375 .. 29842241 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTTCAAATCACCAAGTATTACTGCCTCATTTCATACATTGTAGTTGTAATTGCAATGATGGGTGAGCCATGCTGGGGAGGCTCCAAAACTATGGCGCCCTTGAGTCGATGGAAGGTGGTGATTTTTAGCCAATTGAATCCAGGCGAGAATTTATTAGTTCATTGTAAATCAAAAGACAACGATTTGGGCGAACATTCGTTGCAAGTGAGTCAGAATTTTTCATGGAAATTCAAAGAAAACTTGTTTTCTACAACACTGTTTTGGTGTACTCTAACAACTTCATCGAAGAAAAAAGTAACAATGGATGTGTTTTGGCCAGAGAGACACAATTGGCTTGCTATTCGATGCAGTTACAGAACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTAGTCAACAAGAATGCAAGGGAATTTGTGCGTAAATGGGACAGTTAATTTAATAGCCCTTTTAAAAGTAATTTTAAAATAACTTTTATACATATAAAATGTAATTTCCATATATGTCAATCTCCACCTTATTATTAATAAATAAATTAACAAAATATATGTTTGACTCTAAAAGTTGTATAGTATGATGTGAATGAAATTAAAGTATGATACTAAAATAGAGTAATTAAGAATGAGTAGAAAGTTTAGACGGTGGAAACGACACTTTTGTATTAATTAAATCCTAATTTTAATAATGAAACGTGACAAAAATTAGATCATAGGATAAAAAGGGAATATACCATAGAGAATGGAAGAAAAAGGAATAAAATATTTGTTAATTAGGTTAATTAATTAAAATTAATAATATATTAACGGTGTAATTAAAAAAGGAGTAAACGTTTAGAGAGACGGTGGTAAGAATGAATGCGTAAAAACCTTACAGCTGTAAATCACTGGAGAGTCAACACCAATTGCAATTCAAGAATTCCAACAACCTAACTCCTCCATAAACCCTAGACTTATCATCCCTTCCCCTTCCCTCTCCTTCTTCCCGCGCTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTTCGATGCTTTCATCTTACCCCTCCTCCATCTCTTCAATCTCCACTCTTCCGCTGCTGCTGCTGCTCTCTACTCGATTTTGGTAATTTCCTCTTCTTTCTCCCTACTAACTCTTCTCTCCCGCCGCCGGCTTTTTGGCGGCTTCGGGTTTCCTTCAACTTCCTTTCCTTTATAGGGTTTTATGCTTTTTTCTGGAACTTTGTTGTCTATTGATTTCAATTTAATCGATTTGAGTTAATTTATGTTGTTCCTCTGTTCCTTGTTTGTTTTCCATCCTCTGTTTTATTGTTTCTTATCGCTTCGAGATTTCGAGATCACGAAACTAGGGTTTGCTTATACTTCTGTAAATTTTGCTTGAGTTTGTTTAATTCTTCTTGATCTTTGATCTTTTGCTATTTTCTTTTCGTGATCTTTCAACTTTTATGTTGACGGTAGTTCCGAGATACGTCCTGTGGATTCTGAATTTTGCTTTATGTTTTTAGTTTCAGCTCGTTTCGTTCCCAATAGAAACTCTTCCTTGTTCTCACTACGCAATTTCAAGTGCTTATGTTTCGAGAGCGCGTTTTTTTTTTTTGTGAGGACATGTTTTGTTAGTTGCTGATAGCACCACGGGGGCCGTTTTGTTTGGTCCCATGTTGGTGGAATTATGAGATGCTATAATCTCACGTCGTTGGGTTTTTTTTTTTGTAAGTCATTTAGTGGGTTACGGGTCTATTTTAAGACTGAATTTTATTTTCTATACTGGCTTCTGCAGGTTAATTTCGAGATGAGTAGTTCTTACATCCTTCCTTATCTGGTTGAAGAATGCCACTTTTCTGAAGGTCTTGGTCGATTTTGA

mRNA sequence

ATGGGTGTTCAAATCACCAAGTATTACTGCCTCATTTCATACATTGTAGTTGTAATTGCAATGATGGAATTCCAACAACCTAACTCCTCCATAAACCCTAGACTTATCATCCCTTCCCCTTCCCTCTCCTTCTTCCCGCGCTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTTCGATGCTTTCATCTTACCCCTCCTCCATCTCTTCAATCTCCACTCTTCCGCTGCTGCTGCTGCTCTCTACTCGATTTTGGTTAATTTCGAGATGAGTAGTTCTTACATCCTTCCTTATCTGGTTGAAGAATGCCACTTTTCTGAAGGTCTTGGTCGATTTTGA

Coding sequence (CDS)

ATGGGTGTTCAAATCACCAAGTATTACTGCCTCATTTCATACATTGTAGTTGTAATTGCAATGATGGAATTCCAACAACCTAACTCCTCCATAAACCCTAGACTTATCATCCCTTCCCCTTCCCTCTCCTTCTTCCCGCGCTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTTCGATGCTTTCATCTTACCCCTCCTCCATCTCTTCAATCTCCACTCTTCCGCTGCTGCTGCTGCTCTCTACTCGATTTTGGTTAATTTCGAGATGAGTAGTTCTTACATCCTTCCTTATCTGGTTGAAGAATGCCACTTTTCTGAAGGTCTTGGTCGATTTTGA

Protein sequence

MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFDAFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF
Homology
[Close]
BLAST of CsaV3_6G051260 vs. NCBI nr
Match: KGN49347.1 (hypothetical protein Csa_6G520450 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 9.6e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD 60
           MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD
Sbjct: 1   MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD 60

Query: 61  AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF 113
           AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF
Sbjct: 61  AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF 112

[Close]
BLAST of CsaV3_6G051260 vs. TrEMBL
Match: tr|A0A0A0KLT6|A0A0A0KLT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520450 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.3e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD 60
           MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD
Sbjct: 1   MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD 60

Query: 61  AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF 113
           AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF
Sbjct: 61  AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF 112

The following BLAST results are available for this feature:
BLAST of CsaV3_6G051260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49347.19.6e-54100.00hypothetical protein Csa_6G520450 [Cucumis sativus][more]
BLAST of CsaV3_6G051260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G051260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G051260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLT6|A0A0A0KLT6_CUCSA6.3e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520450 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G051260.1CsaV3_6G051260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G051260CsGy6G035250Cucumber (Gy14) v2cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G051260Cucumber (Chinese Long) v3cuccucB048
CsaV3_6G051260Silver-seed gourdcarcucB0175
CsaV3_6G051260Silver-seed gourdcarcucB0585
CsaV3_6G051260Silver-seed gourdcarcucB0840
CsaV3_6G051260Silver-seed gourdcarcucB0999
CsaV3_6G051260Cucumber (Gy14) v2cgybcucB047
CsaV3_6G051260Cucumber (Gy14) v1cgycucB028
CsaV3_6G051260Cucumber (Gy14) v1cgycucB334
CsaV3_6G051260Cucurbita maxima (Rimu)cmacucB0265
CsaV3_6G051260Cucurbita maxima (Rimu)cmacucB0506
CsaV3_6G051260Cucurbita maxima (Rimu)cmacucB0807
CsaV3_6G051260Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G051260Cucurbita moschata (Rifu)cmocucB0254
CsaV3_6G051260Cucurbita moschata (Rifu)cmocucB0494
CsaV3_6G051260Cucurbita moschata (Rifu)cmocucB0791
CsaV3_6G051260Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G051260Cucurbita pepo (Zucchini)cpecucB0054
CsaV3_6G051260Cucurbita pepo (Zucchini)cpecucB0096
CsaV3_6G051260Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G051260Cucurbita pepo (Zucchini)cpecucB0650
CsaV3_6G051260Wild cucumber (PI 183967)cpicucB054
CsaV3_6G051260Wild cucumber (PI 183967)cpicucB363
CsaV3_6G051260Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G051260Bottle gourd (USVL1VR-Ls)cuclsiB465
CsaV3_6G051260Melon (DHL92) v3.5.1cucmeB461
CsaV3_6G051260Melon (DHL92) v3.5.1cucmeB464
CsaV3_6G051260Melon (DHL92) v3.5.1cucmeB520
CsaV3_6G051260Melon (DHL92) v3.6.1cucmedB454
CsaV3_6G051260Melon (DHL92) v3.6.1cucmedB508
CsaV3_6G051260Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G051260Watermelon (Charleston Gray)cucwcgB483
CsaV3_6G051260Watermelon (97103) v1cucwmB506
CsaV3_6G051260Watermelon (97103) v1cucwmB526
CsaV3_6G051260Watermelon (97103) v2cucwmbB430
CsaV3_6G051260Watermelon (97103) v2cucwmbB458
CsaV3_6G051260Watermelon (97103) v2cucwmbB470
CsaV3_6G051260Wax gourdcucwgoB638
CsaV3_6G051260Wax gourdcucwgoB640
CsaV3_6G051260Wax gourdcucwgoB658