CsaV3_6G046200 (gene) Cucumber (Chinese Long) v3

NameCsaV3_6G046200
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLate embryogenesis abundant protein
Locationchr6 : 27328877 .. 27329988 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTCCAAAAGCAAATATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTGTGCTCACATCACCTCTTCCGCCGAAGCTTCGCCGTATAAGCTCGCCTGAACTTCCATCCCGTCAAGCGATTAGTTTTGCCACTGCACCTGATCGGAATCCAAAGTGCGAAGAAATGGATGACTCTCAGAACAAAACCAAGGAGACTGGGTTAGTAGACTCCATTTTGTTGATTATTTTGGTTAATGTTTATGTTTTTTTTTTTTAATTTATATAAATATTTAAACCAACTATTAAATAAAAATATGTTTTAGTTTTCAAAACAAAAGAAACAGACAACAAAATATGAAAATCTTGAAAACAAAATGATTGTCAGAATGGGACTTTATTTTTTGTTTTGTTTCTTTCATATGAAATGGGTTAATGTGTGAAAACAGAGATATAATGTGTGATTCATTCGGAGAAGGGTATGCGACCCGAAGCGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAAATATCAGTCAATTGACGATGACGAACACATGAATAAAAAACCAGTCAATCAACATGGTAATTAAACACATACACATCCTTAAAAGGAAAAAGTAAATGTGTGCATGATTTAATAGTTAAATGATTTTAATTGGTATATTGTTGTTTTGATGGTGTGATTGAAGAATATGATAAAAGCCAGGGGAGCGAAGTGAAAGAGAAGGAGAAGTCACGCCATCAAGCTCATGCAAATTGAACTGCTCTACAATATATTGCTGTTTGTTGGGTTGGTAGCTCAATGTCGTCGAGTGTTTGGTTTCTCATCTTTTTGTTGGATATATCGTTTTCTGGGAATTTAGGTTCGTTATTTGTCACTATTTAGTTCACGTGGTAACTAAAGATGGTCTCACTTTCACCTGTTGTATATTATTGGGTATTTTCTTCATATAGTGAGGATGTATCCTTTTCATGGTAATTTTGACATTTGCATCATATGAATATATGAGAAACAACGTTCAATCACAATAATAAATGAAATGATCGATAGTTGAATAGCGCGCTATAGATCTGTAGGATGTTTCTTCTCATTCTCTCTAAAGATGATGCCTTAAAAGTCGG

mRNA sequence

ATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTGTGCTCACATCACCTCTTCCGCCGAAGCTTCGCCGTATAAGCTCGCCTGAACTTCCATCCCGTCAAGCGATTAGTTTTGCCACTGCACCTGATCGGAATCCAAAGTGCGAAGAAATGGATGACTCTCAGAACAAAACCAAGGAGACTGGAGATATAATGTGTGATTCATTCGGAGAAGGGTATGCGACCCGAAGCGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAAATATCAGTCAATTGACGATGACGAACACATGAATAAAAAACCAGTCAATCAACATGAATATGATAAAAGCCAGGGGAGCGAAGTGAAAGAGAAGGAGAAGTCACGCCATCAAGCTCATGCAAATTGA

Coding sequence (CDS)

ATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTGTGCTCACATCACCTCTTCCGCCGAAGCTTCGCCGTATAAGCTCGCCTGAACTTCCATCCCGTCAAGCGATTAGTTTTGCCACTGCACCTGATCGGAATCCAAAGTGCGAAGAAATGGATGACTCTCAGAACAAAACCAAGGAGACTGGAGATATAATGTGTGATTCATTCGGAGAAGGGTATGCGACCCGAAGCGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAAATATCAGTCAATTGACGATGACGAACACATGAATAAAAAACCAGTCAATCAACATGAATATGATAAAAGCCAGGGGAGCGAAGTGAAAGAGAAGGAGAAGTCACGCCATCAAGCTCATGCAAATTGA

Protein sequence

MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKTKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVKEKEKSRHQAHAN
BLAST of CsaV3_6G046200 vs. NCBI nr
Match: XP_011658492.1 (PREDICTED: uncharacterized protein LOC101219972 [Cucumis sativus] >KGN48825.1 hypothetical protein Csa_6G502630 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 8.9e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60
           MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK 120
           KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK
Sbjct: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK 120

Query: 121 EKEKSRHQAHAN 133
           EKEKSRHQAHAN
Sbjct: 121 EKEKSRHQAHAN 132

BLAST of CsaV3_6G046200 vs. NCBI nr
Match: XP_008441122.1 (PREDICTED: uncharacterized protein LOC103485350 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 106/133 (79.70%), Postives = 111/133 (83.46%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRR-ISSPELPSRQAISFATAPDRNPKCEEMDDSQNK 60
           MINAIRFGRTPPPIVLTSPLPP+LRR I S EL SRQA  FATAPD+NPK EEMD+SQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEV 120
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGG               VN+HEYD+SQGSEV
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDXXXXXXXXXXXVNEHEYDRSQGSEV 120

Query: 121 KEKEKSRHQAHAN 133
           KEKEKSRHQAHAN
Sbjct: 121 KEKEKSRHQAHAN 133

BLAST of CsaV3_6G046200 vs. NCBI nr
Match: XP_023543425.1 (uncharacterized protein LOC111803315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.4 bits (394), Expect = 6.9e-35
Identity = 88/132 (66.67%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60
           M+NAIRF R+PPPIVLT PLPP+LRRI  PEL SRQ ISF+TAPD+NP  + MDDS+N  
Sbjct: 1   MMNAIRFARSPPPIVLTLPLPPQLRRIDLPELRSRQLISFSTAPDQNP--QNMDDSKNTA 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK 120
           K+T D+M DSFG  YA+RSEEEGFGG Y    +S D+     KKP    EYDKSQGSEVK
Sbjct: 61  KQTEDLMTDSFGHAYASRSEEEGFGGIY-RSVESTDEGAENEKKP----EYDKSQGSEVK 120

Query: 121 EKEKSRHQAHAN 133
           EKEK+RHQAH+N
Sbjct: 121 EKEKARHQAHSN 125

BLAST of CsaV3_6G046200 vs. NCBI nr
Match: XP_023543426.1 (uncharacterized protein LOC111803316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 86/132 (65.15%), Postives = 100/132 (75.76%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60
           MINAIRFGR+PPPIVLT PLPP+LRRI +PEL SRQ I F+TAPD+NP  + MDDS+N  
Sbjct: 1   MINAIRFGRSPPPIVLTLPLPPQLRRIDAPELRSRQRIGFSTAPDQNP--QNMDDSKNTA 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK 120
           K+TGDIM DSFG  YA RSE EGFGG Y     + +  E+  K+     EYDKSQGSEVK
Sbjct: 61  KQTGDIMTDSFGLAYACRSEYEGFGGIYRWIKSTEEGAENEKKR-----EYDKSQGSEVK 120

Query: 121 EKEKSRHQAHAN 133
           EKEK+RHQ H+N
Sbjct: 121 EKEKARHQTHSN 125

BLAST of CsaV3_6G046200 vs. NCBI nr
Match: XP_022950398.1 (uncharacterized protein LOC111453509 [Cucurbita moschata])

HSP 1 Score: 147.9 bits (372), Expect = 2.4e-32
Identity = 85/132 (64.39%), Postives = 98/132 (74.24%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60
           MIN+IRFGR PPPIVLT PLPP+LRRI SPEL SRQ I F+TAPD+N   E MDDS+N  
Sbjct: 1   MINSIRFGRVPPPIVLTLPLPPRLRRIDSPELRSRQLIGFSTAPDQNQ--ENMDDSKNTD 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK 120
           K++GDIM DSFG  YA RSE EGFGG Y     + +  E+  K+     EYDKSQGSEVK
Sbjct: 61  KQSGDIMTDSFGLAYACRSEYEGFGGIYRWIKSTEEGAENEKKR-----EYDKSQGSEVK 120

Query: 121 EKEKSRHQAHAN 133
           EKEK+RHQ H+N
Sbjct: 121 EKEKARHQTHSN 125

BLAST of CsaV3_6G046200 vs. TAIR10
Match: AT5G66780.1 (unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-14
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTS--PLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDS-Q 60
           MINA +  R+ P     S    P +L R           +SFAT  D+    ++MD   +
Sbjct: 1   MINAFKTIRSLPSNTTVSFCSTPSRLGR-------KVTGVSFATTSDQ----QKMDKKPE 60

Query: 61  NKTKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGS 120
           N  ++TGD+M  S+GEGYATRS+EEGFGG YGG  Q++  +  +++   N  +YDK+QGS
Sbjct: 61  NPNEKTGDVMSHSYGEGYATRSDEEGFGGIYGGN-QTLQKENEIHE---NHPDYDKTQGS 120

Query: 121 EVKEKEKSRHQAHAN 133
           E KEKEK+R+Q  ++
Sbjct: 121 ESKEKEKARNQTQSH 120

BLAST of CsaV3_6G046200 vs. TrEMBL
Match: tr|A0A0A0KGG3|A0A0A0KGG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.9e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60
           MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK 120
           KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK
Sbjct: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK 120

Query: 121 EKEKSRHQAHAN 133
           EKEKSRHQAHAN
Sbjct: 121 EKEKSRHQAHAN 132

BLAST of CsaV3_6G046200 vs. TrEMBL
Match: tr|A0A1S3B3C5|A0A1S3B3C5_CUCME (uncharacterized protein LOC103485350 OS=Cucumis melo OX=3656 GN=LOC103485350 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.8e-47
Identity = 106/133 (79.70%), Postives = 111/133 (83.46%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRR-ISSPELPSRQAISFATAPDRNPKCEEMDDSQNK 60
           MINAIRFGRTPPPIVLTSPLPP+LRR I S EL SRQA  FATAPD+NPK EEMD+SQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEV 120
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGG               VN+HEYD+SQGSEV
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDXXXXXXXXXXXVNEHEYDRSQGSEV 120

Query: 121 KEKEKSRHQAHAN 133
           KEKEKSRHQAHAN
Sbjct: 121 KEKEKSRHQAHAN 133

BLAST of CsaV3_6G046200 vs. TrEMBL
Match: tr|A0A2P4JK90|A0A2P4JK90_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_30394 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.6e-18
Identity = 63/134 (47.01%), Postives = 85/134 (63.43%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60
           M NAIR  RT PP +L+ PLP +     +  +  R+  S +T P+     +E+    N  
Sbjct: 1   MNNAIRLTRTYPPTLLSVPLPQQ----KASGIRFRKITSMSTQPESKQNRDEVQKGLNPN 60

Query: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGK--YQSIDDDEHMNKKPVNQHEYDKSQGSE 120
           ++TGD+M  SFG+GYATRS+EEGFGG YG K  +Q    DE +++   N   YDK+QGSE
Sbjct: 61  QKTGDVMSHSFGDGYATRSDEEGFGGIYGEKQSFQKPQKDEPIHE---NHPAYDKTQGSE 120

Query: 121 VKEKEKSRHQAHAN 133
           VKEKEK+RHQ +AN
Sbjct: 121 VKEKEKARHQTNAN 127

BLAST of CsaV3_6G046200 vs. TrEMBL
Match: tr|V7CFG3|V7CFG3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G029900g PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.7e-16
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60
           M+++I+   T   + L+  L  KL R +S       A+ F T PD N    +MD S   +
Sbjct: 1   MLHSIKTVLTYQHVSLSRSLSSKLCREAS-------AVRFCTKPDSNSGAHKMDKSHKPS 60

Query: 61  KET--GDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSE 120
           +ET  GD M  SFGEGYATRS+EEGFGG YGGK QS+ + E       N   YDK+QGSE
Sbjct: 61  EETKHGDAMSHSFGEGYATRSDEEGFGGIYGGK-QSMPNTEKDKIIHENHPAYDKTQGSE 120

Query: 121 VKEKEKSRHQAHAN 133
           VKEKEK+RHQ+ AN
Sbjct: 121 VKEKEKARHQSSAN 126

BLAST of CsaV3_6G046200 vs. TrEMBL
Match: tr|A0A2H5NSJ8|A0A2H5NSJ8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_069010 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 62/133 (46.62%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 1   MINAIRFGRTPPPIVLTSPLPPKL-RRISSPELPSRQAISFATAPDRNPKCEEMDDSQNK 60
           M +AIR  R  PP VL S  P     + SS EL     +S      +N +  +  D  N 
Sbjct: 1   MNHAIRSFRANPPAVLLSSFPSCAGHKASSVELRQVTTLSKKPTNPQNMETSQKMDPNNP 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEV 120
            ++TGD+M  SFGEGYATRS+EEGFGG YGG     + DE       N   +DKSQGSEV
Sbjct: 61  QEKTGDVMSHSFGEGYATRSDEEGFGGIYGGNQFFPNKDEKDKDINENHPAFDKSQGSEV 120

Query: 121 KEKEKSRHQAHAN 133
           KEKEK+RHQ +A+
Sbjct: 121 KEKEKARHQTNAS 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011658492.18.9e-67100.00PREDICTED: uncharacterized protein LOC101219972 [Cucumis sativus] >KGN48825.1 hy... [more]
XP_008441122.11.0e-4679.70PREDICTED: uncharacterized protein LOC103485350 [Cucumis melo][more]
XP_023543425.16.9e-3566.67uncharacterized protein LOC111803315 [Cucurbita pepo subsp. pepo][more]
XP_023543426.11.7e-3365.15uncharacterized protein LOC111803316 [Cucurbita pepo subsp. pepo][more]
XP_022950398.12.4e-3264.39uncharacterized protein LOC111453509 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G66780.12.1e-1441.48unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KGG3|A0A0A0KGG3_CUCSA5.9e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1[more]
tr|A0A1S3B3C5|A0A1S3B3C5_CUCME6.8e-4779.70uncharacterized protein LOC103485350 OS=Cucumis melo OX=3656 GN=LOC103485350 PE=... [more]
tr|A0A2P4JK90|A0A2P4JK90_QUESU6.6e-1847.01Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_30394 PE=4 SV=1[more]
tr|V7CFG3|V7CFG3_PHAVU4.7e-1648.51Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G029900g PE=4 ... [more]
tr|A0A2H5NSJ8|A0A2H5NSJ8_CITUN1.4e-1546.62Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_069010 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G046200.1CsaV3_6G046200.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..62
NoneNo IPR availablePANTHERPTHR36410FAMILY NOT NAMEDcoord: 44..130

The following gene(s) are paralogous to this gene:

None