CsaV3_6G036090 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G036090
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 20036619 .. 20036966 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCAGAACAGAGCTGAGAAGTGGCAGAAACCTCGAGAGATGGAAGCAAATTGGTCACATCCTTGTGAGGTTTTCTCGGAGAATCCATCCTCAACTCTCCACCCTCCATCTCTTCCAAACACCAATCTCCACCCTCCGATTCTCTTACCCTTTTTCAACGGCCCAATTTTAGACCGGCCCTTCCCGGTCTCCTCTGGGCCGGACCGCCCCGTCCCCCCCTCTTTCAATGCACTTACTTACTTGTACCTTAGCCTACCATGTCCTTGTACAATGTACTCTCTTATATACTTTGGTTTGCCTTCCATCATGCCAAAAATCCTCCCGATACGGGTCCGCTTTCAATGA

mRNA sequence

ATGTGGCAGAACAGAGCTGAGAAGTGGCAGAAACCTCGAGAGATGGAAGCAAATTGGTCACATCCTTGTGAGGTTTTCTCGGAGAATCCATCCTCAACTCTCCACCCTCCATCTCTTCCAAACACCAATCTCCACCCTCCGATTCTCTTACCCTTTTTCAACGGCCCAATTTTAGACCGGCCCTTCCCGGTCTCCTCTGGGCCGGACCGCCCCGTCCCCCCCTCTTTCAATGCACTTACTTACTTGTACCTTAGCCTACCATGTCCTTGTACAATGTACTCTCTTATATACTTTGGTTTGCCTTCCATCATGCCAAAAATCCTCCCGATACGGGTCCGCTTTCAATGA

Coding sequence (CDS)

ATGTGGCAGAACAGAGCTGAGAAGTGGCAGAAACCTCGAGAGATGGAAGCAAATTGGTCACATCCTTGTGAGGTTTTCTCGGAGAATCCATCCTCAACTCTCCACCCTCCATCTCTTCCAAACACCAATCTCCACCCTCCGATTCTCTTACCCTTTTTCAACGGCCCAATTTTAGACCGGCCCTTCCCGGTCTCCTCTGGGCCGGACCGCCCCGTCCCCCCCTCTTTCAATGCACTTACTTACTTGTACCTTAGCCTACCATGTCCTTGTACAATGTACTCTCTTATATACTTTGGTTTGCCTTCCATCATGCCAAAAATCCTCCCGATACGGGTCCGCTTTCAATGA

Protein sequence

MWQNRAEKWQKPREMEANWSHPCEVFSENPSSTLHPPSLPNTNLHPPILLPFFNGPILDRPFPVSSGPDRPVPPSFNALTYLYLSLPCPCTMYSLIYFGLPSIMPKILPIRVRFQ
Homology
[Close]
BLAST of CsaV3_6G036090 vs. NCBI nr
Match: KGN47790.1 (hypothetical protein Csa_6G403320 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 7.1e-36
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MWQNRAEKWQKPREMEANWSHPCEVFSENPSSTLHPPSLXXXXXXXXXXXXXXXXXXXXX 60
           MWQNRAEKWQKPREMEANWSHPCEVFSENPSSTLHPPSLXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MWQNRAEKWQKPREMEANWSHPCEVFSENPSSTLHPPSLXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXSFNALTYLYLSLPCPCTMYSLIYFGLPSIMPKILPIRVRFQ 116
           XXXXXXXXXXXXXXSFNALTYLYLSLPCPCTMYSLIYFGLPSIMPKILPIRVRFQ
Sbjct: 61  XXXXXXXXXXXXXXSFNALTYLYLSLPCPCTMYSLIYFGLPSIMPKILPIRVRFQ 115

[Close]
BLAST of CsaV3_6G036090 vs. TrEMBL
Match: tr|A0A0A0KDK1|A0A0A0KDK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G403320 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.7e-36
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MWQNRAEKWQKPREMEANWSHPCEVFSENPSSTLHPPSLXXXXXXXXXXXXXXXXXXXXX 60
           MWQNRAEKWQKPREMEANWSHPCEVFSENPSSTLHPPSLXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MWQNRAEKWQKPREMEANWSHPCEVFSENPSSTLHPPSLXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXSFNALTYLYLSLPCPCTMYSLIYFGLPSIMPKILPIRVRFQ 116
           XXXXXXXXXXXXXXSFNALTYLYLSLPCPCTMYSLIYFGLPSIMPKILPIRVRFQ
Sbjct: 61  XXXXXXXXXXXXXXSFNALTYLYLSLPCPCTMYSLIYFGLPSIMPKILPIRVRFQ 115

The following BLAST results are available for this feature:
BLAST of CsaV3_6G036090 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47790.17.1e-36100.00hypothetical protein Csa_6G403320 [Cucumis sativus][more]
BLAST of CsaV3_6G036090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDK1|A0A0A0KDK1_CUCSA4.7e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G403320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G036090.1CsaV3_6G036090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G036090CSPI06G21070Wild cucumber (PI 183967)cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G036090Watermelon (97103) v2cucwmbB518
CsaV3_6G036090Wax gourdcucwgoB601
CsaV3_6G036090Wax gourdcucwgoB611
CsaV3_6G036090Silver-seed gourdcarcucB0155
CsaV3_6G036090Silver-seed gourdcarcucB0239
CsaV3_6G036090Cucumber (Gy14) v2cgybcucB298
CsaV3_6G036090Cucumber (Gy14) v1cgycucB053
CsaV3_6G036090Cucurbita maxima (Rimu)cmacucB0223
CsaV3_6G036090Cucurbita maxima (Rimu)cmacucB0228
CsaV3_6G036090Cucurbita maxima (Rimu)cmacucB0953
CsaV3_6G036090Cucurbita moschata (Rifu)cmocucB0217
CsaV3_6G036090Cucurbita moschata (Rifu)cmocucB0210
CsaV3_6G036090Cucurbita moschata (Rifu)cmocucB0941
CsaV3_6G036090Cucurbita pepo (Zucchini)cpecucB0135
CsaV3_6G036090Cucurbita pepo (Zucchini)cpecucB1034
CsaV3_6G036090Cucurbita pepo (Zucchini)cpecucB1041
CsaV3_6G036090Bottle gourd (USVL1VR-Ls)cuclsiB510
CsaV3_6G036090Melon (DHL92) v3.5.1cucmeB485
CsaV3_6G036090Melon (DHL92) v3.6.1cucmedB475
CsaV3_6G036090Watermelon (Charleston Gray)cucwcgB528
CsaV3_6G036090Watermelon (97103) v1cucwmB495