CsaV3_6G007800 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G007800
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 6248424 .. 6248657 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGGTGGGGTTGAGGCTAGCTCTCCGGGAGGGATGTCCTTCAATCATGTTCTATATATGTTGATTCTATATATGTTGATGTACCTTCTTTCTCCTAATATATACGATCCACTTGGTGGTGTTTTTACAAGCTATCATAGGAACATAACTCAGCTTACACACACCATCGATTCACGAGTAATCATTGCTGGAATATTTCCTCCATTTGAAGTGGTAAAATCTGTTTGA

mRNA sequence

ATGGCCATGGGTGGGGTTGAGGCTAGCTCTCCGGGAGGGATGTCCTTCAATCATGTTCTATATATGTTGATTCTATATATGTTGATGTACCTTCTTTCTCCTAATATATACGATCCACTTGGTGGTGTTTTTACAAGCTATCATAGGAACATAACTCAGCTTACACACACCATCGATTCACGAGTAATCATTGCTGGAATATTTCCTCCATTTGAAGTGGTAAAATCTGTTTGA

Coding sequence (CDS)

ATGGCCATGGGTGGGGTTGAGGCTAGCTCTCCGGGAGGGATGTCCTTCAATCATGTTCTATATATGTTGATTCTATATATGTTGATGTACCTTCTTTCTCCTAATATATACGATCCACTTGGTGGTGTTTTTACAAGCTATCATAGGAACATAACTCAGCTTACACACACCATCGATTCACGAGTAATCATTGCTGGAATATTTCCTCCATTTGAAGTGGTAAAATCTGTTTGA

Protein sequence

MAMGGVEASSPGGMSFNHVLYMLILYMLMYLLSPNIYDPLGGVFTSYHRNITQLTHTIDSRVIIAGIFPPFEVVKSV

Homology

[Close]

BLAST of CsaV3_6G007800 vs. NCBI nr
Match: KGN46416.1 (hypothetical protein Csa_6G091890 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAMGGVEASSPGGMSFNHVLYMLILYMLMYLLSPNIYDPLGGVFTSYHRNITQLTHTIDS 60
          MAMGGVEASSPGGMSFNHVLYMLILYMLMYLLSPNIYDPLGGVFTSYHRNITQLTHTIDS
Sbjct: 1  MAMGGVEASSPGGMSFNHVLYMLILYMLMYLLSPNIYDPLGGVFTSYHRNITQLTHTIDS 60

Query: 61 RVIIAGIFPPFEVVKSV 78
          RVIIAGIFPPFEVVKSV
Sbjct: 61 RVIIAGIFPPFEVVKSV 77

[Close]

BLAST of CsaV3_6G007800 vs. TrEMBL
Match: tr|A0A0A0KF83|A0A0A0KF83_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091890 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAMGGVEASSPGGMSFNHVLYMLILYMLMYLLSPNIYDPLGGVFTSYHRNITQLTHTIDS 60
          MAMGGVEASSPGGMSFNHVLYMLILYMLMYLLSPNIYDPLGGVFTSYHRNITQLTHTIDS
Sbjct: 1  MAMGGVEASSPGGMSFNHVLYMLILYMLMYLLSPNIYDPLGGVFTSYHRNITQLTHTIDS 60

Query: 61 RVIIAGIFPPFEVVKSV 78
          RVIIAGIFPPFEVVKSV
Sbjct: 61 RVIIAGIFPPFEVVKSV 77

The following BLAST results are available for this feature:

BLAST of CsaV3_6G007800 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46416.1	1.8e-35	100.00	hypothetical protein Csa_6G091890 [Cucumis sativus]	[more]

BLAST of CsaV3_6G007800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G007800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G007800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KF83\|A0A0A0KF83_CUCSA	1.2e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091890 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G007800.1	CsaV3_6G007800.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G007800	Silver-seed gourd	carcucB0012
CsaV3_6G007800	Silver-seed gourd	carcucB0734
CsaV3_6G007800	Silver-seed gourd	carcucB1024
CsaV3_6G007800	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G007800	Cucumber (Gy14) v1	cgycucB239
CsaV3_6G007800	Cucumber (Gy14) v1	cgycucB532
CsaV3_6G007800	Cucurbita maxima (Rimu)	cmacucB0439
CsaV3_6G007800	Cucurbita maxima (Rimu)	cmacucB1072
CsaV3_6G007800	Cucurbita moschata (Rifu)	cmocucB0148
CsaV3_6G007800	Cucurbita moschata (Rifu)	cmocucB0433
CsaV3_6G007800	Cucurbita moschata (Rifu)	cmocucB1054
CsaV3_6G007800	Cucurbita pepo (Zucchini)	cpecucB0166
CsaV3_6G007800	Cucurbita pepo (Zucchini)	cpecucB0403
CsaV3_6G007800	Cucurbita pepo (Zucchini)	cpecucB0784
CsaV3_6G007800	Cucurbita pepo (Zucchini)	cpecucB1075
CsaV3_6G007800	Wild cucumber (PI 183967)	cpicucB053
CsaV3_6G007800	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G007800	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G007800	Melon (DHL92) v3.5.1	cucmeB444
CsaV3_6G007800	Melon (DHL92) v3.6.1	cucmedB435
CsaV3_6G007800	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G007800	Watermelon (97103) v1	cucwmB562
CsaV3_6G007800	Watermelon (97103) v2	cucwmbB487
CsaV3_6G007800	Wax gourd	cucwgoB549