CsaV3_5G015050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G015050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 12241456 .. 12241803 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTTTTCCGATTGGAACTTACGATTTACAAACTTGCAAGTGTGAAGGGAACAAAGCCTAAACGGAGTACGGTCTGTGAACTTGCAAATAAGAAGGCTGAAATGTTCGCCGGTTGGAACACGCAAAGGTCAGAACTGAGAACTGTGAAGGGAAACAAACGAAAAATGTTGGGAACAAAGCTTAAGAGTGTGCCCTGCAAAGTGCGAACTTATGAATGCAAGGGTCAGAACGTTTGCCAGCCGAAACGTTTGAAGGTCGAAACTGAGAACTACACAGGTTGGAAATTGAAACTGAAGAACGTGCGAAGAACAGACGAAATGTCATGCGCCATCTATAGTGGATGA

mRNA sequence

ATGAAGGTTTTCCGATTGGAACTTACGATTTACAAACTTGCAAGTGTGAAGGGAACAAAGCCTAAACGGAGTACGGTCTGTGAACTTGCAAATAAGAAGGCTGAAATGTTCGCCGGTTGGAACACGCAAAGGTCAGAACTGAGAACTGTGAAGGGAAACAAACGAAAAATGTTGGGAACAAAGCTTAAGAGTGTGCCCTGCAAAGTGCGAACTTATGAATGCAAGGGTCAGAACGTTTGCCAGCCGAAACGTTTGAAGGTCGAAACTGAGAACTACACAGGTTGGAAATTGAAACTGAAGAACGTGCGAAGAACAGACGAAATGTCATGCGCCATCTATAGTGGATGA

Coding sequence (CDS)

ATGAAGGTTTTCCGATTGGAACTTACGATTTACAAACTTGCAAGTGTGAAGGGAACAAAGCCTAAACGGAGTACGGTCTGTGAACTTGCAAATAAGAAGGCTGAAATGTTCGCCGGTTGGAACACGCAAAGGTCAGAACTGAGAACTGTGAAGGGAAACAAACGAAAAATGTTGGGAACAAAGCTTAAGAGTGTGCCCTGCAAAGTGCGAACTTATGAATGCAAGGGTCAGAACGTTTGCCAGCCGAAACGTTTGAAGGTCGAAACTGAGAACTACACAGGTTGGAAATTGAAACTGAAGAACGTGCGAAGAACAGACGAAATGTCATGCGCCATCTATAGTGGATGA

Protein sequence

MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGNKRKMLGTKLKSVPCKVRTYECKGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG
Homology
[Close]
BLAST of CsaV3_5G015050 vs. NCBI nr
Match: KGN49651.1 (hypothetical protein Csa_5G046520 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGXXXXXXXX 60
           MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGXXXXXXXX
Sbjct: 1   MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG 116
           XXXXXXXXXXXXXXXGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG
Sbjct: 61  XXXXXXXXXXXXXXXGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG 115

[Close]
BLAST of CsaV3_5G015050 vs. TrEMBL
Match: tr|A0A0A0KPK1|A0A0A0KPK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G046520 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGXXXXXXXX 60
           MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGXXXXXXXX
Sbjct: 1   MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG 116
           XXXXXXXXXXXXXXXGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG
Sbjct: 61  XXXXXXXXXXXXXXXGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG 115

The following BLAST results are available for this feature:
BLAST of CsaV3_5G015050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49651.11.7e-42100.00hypothetical protein Csa_5G046520 [Cucumis sativus][more]
BLAST of CsaV3_5G015050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPK1|A0A0A0KPK1_CUCSA1.1e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G046520 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015050.1CsaV3_5G015050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G015050CSPI05G01190Wild cucumber (PI 183967)cpicucB286
CsaV3_5G015050CsGy5G011390Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G015050Silver-seed gourdcarcucB0707
CsaV3_5G015050Cucumber (Gy14) v1cgycucB564
CsaV3_5G015050Cucurbita maxima (Rimu)cmacucB0878
CsaV3_5G015050Cucurbita maxima (Rimu)cmacucB0879
CsaV3_5G015050Cucurbita moschata (Rifu)cmocucB0861
CsaV3_5G015050Cucurbita moschata (Rifu)cmocucB0867
CsaV3_5G015050Cucurbita pepo (Zucchini)cpecucB0533
CsaV3_5G015050Bottle gourd (USVL1VR-Ls)cuclsiB395
CsaV3_5G015050Melon (DHL92) v3.5.1cucmeB400
CsaV3_5G015050Melon (DHL92) v3.6.1cucmedB393
CsaV3_5G015050Watermelon (Charleston Gray)cucwcgB427
CsaV3_5G015050Watermelon (97103) v2cucwmbB413