CsaV3_3G026270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G026270
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionAuxin-responsive protein
Locationchr3 : 22394478 .. 22395338 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATTCACATGTTGGTGTTGGAGAATCCCACCAAATCAGAAACCCGACCATCTCTATCTCTCTCTTTTTTTTAATTAAATCAAACACAAAGTCCCACTTTTGTTCCTCTTGTCTCCGACCGGCCGGCGACCACAATGCTATTCATTTTCCATATCTCATTATTATCCCCATTCCCCCATATAATTTCTCTTCCATCTATTTATATATATATATAAATATAACCTCTCATTTTGGTTCTTACACCATTAACAAAAACTCTCACATACACTTAATCTCATCTTCACAGAACAAAAATGGCATCCAATGGAGTTGAACTTGAAATCACTGAGCTCCGATTAGGGCTTCCGGGGAGTGGCGGTTGCCGTACCTCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTGTGAGAGTAGCAGTACCAACAATGATGGCGGTGACCAACCATTCCCAAAAAGGAATCAGGTTGTTGGGTGGCCGCCGGTTTGCTCTCATCGAAGAAGGAGTAGTGGTAGCGGTAACAATAAAGATCTATCTGAAACCGAAACTCCCAAGATTTATGTGAAGATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTCATAAAGGGTATTCAGATCTTGTGGTGGCGATGGAGAATTTGTTCGGCTCGGCACTCGGATGCTCCGACTTTGTGCTGATCTACGAAGATCGGGATGGCGATTGGATGCTCGTCGGTGATGTACCATGGAATATGTTTGTTGAATCTTGCAAGAGATTGAGAATAATGAAGAGAACGGAAGTTAAAGGATTTGAGATTCATGTCCCATCTGAAACCCTAAGTAGTAGTTCTTCAAAGGAACTATAA

mRNA sequence

ATGGGGATTCACATAACAAAAATGGCATCCAATGGAGTTGAACTTGAAATCACTGAGCTCCGATTAGGGCTTCCGGGGAGTGGCGGTTGCCGTACCTCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTGTGAGAGTAGCAGTACCAACAATGATGGCGGTGACCAACCATTCCCAAAAAGGAATCAGGTTGTTGGGTGGCCGCCGGTTTGCTCTCATCGAAGAAGGAGTAGTGGTAGCGGTAACAATAAAGATCTATCTGAAACCGAAACTCCCAAGATTTATGTGAAGATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTCATAAAGGGTATTCAGATCTTGTGGTGGCGATGGAGAATTTGTTCGGCTCGGCACTCGGATGCTCCGACTTTGTGCTGATCTACGAAGATCGGGATGGCGATTGGATGCTCGTCGGTGATGTACCATGGAATATGTTTGTTGAATCTTGCAAGAGATTGAGAATAATGAAGAGAACGGAAGTTAAAGGATTTGAGATTCATGTCCCATCTGAAACCCTAAGTAGTAGTTCTTCAAAGGAACTATAA

Coding sequence (CDS)

ATGGGGATTCACATAACAAAAATGGCATCCAATGGAGTTGAACTTGAAATCACTGAGCTCCGATTAGGGCTTCCGGGGAGTGGCGGTTGCCGTACCTCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTGTGAGAGTAGCAGTACCAACAATGATGGCGGTGACCAACCATTCCCAAAAAGGAATCAGGTTGTTGGGTGGCCGCCGGTTTGCTCTCATCGAAGAAGGAGTAGTGGTAGCGGTAACAATAAAGATCTATCTGAAACCGAAACTCCCAAGATTTATGTGAAGATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTCATAAAGGGTATTCAGATCTTGTGGTGGCGATGGAGAATTTGTTCGGCTCGGCACTCGGATGCTCCGACTTTGTGCTGATCTACGAAGATCGGGATGGCGATTGGATGCTCGTCGGTGATGTACCATGGAATATGTTTGTTGAATCTTGCAAGAGATTGAGAATAATGAAGAGAACGGAAGTTAAAGGATTTGAGATTCATGTCCCATCTGAAACCCTAAGTAGTAGTTCTTCAAAGGAACTATAA

Protein sequence

MGIHITKMASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLSSSSSKEL
Homology
[Close]
BLAST of CsaV3_3G026270 vs. NCBI nr
Match: XP_004149851.2 (PREDICTED: auxin-induced protein 22A-like [Cucumis sativus] >KGN58115.1 hypothetical protein Csa_3G516540 [Cucumis sativus])

HSP 1 Score: 386.3 bits (991), Expect = 6.0e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
           PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

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BLAST of CsaV3_3G026270 vs. NCBI nr
Match: XP_023525671.1 (auxin-induced protein 22A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 141/196 (71.94%), Postives = 160/196 (81.63%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFC---------ESSSTNNDGGDQPF 67
           MASNG+ELEITELRLGLPGSG   TS+SK++ KRVF          E SST+ DG D+  
Sbjct: 1   MASNGLELEITELRLGLPGSG--HTSTSKHDNKRVFSEMNANEGGDERSSTDCDGADRRR 60

Query: 68  PKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYS 127
            K+NQVVGWPPVCS+RRRS  +GN+KDLSET   K+YVK+SMDGAPYLRKVDLG HKGYS
Sbjct: 61  SKKNQVVGWPPVCSYRRRS--NGNDKDLSETS--KMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 128 DLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFE 187
           DL +AMENLFG A+G SD+V IYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFE
Sbjct: 121 DLGMAMENLFGCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 188 IHVPSETLSSSSSKEL 195
           I VP +T SSSS ++L
Sbjct: 181 IQVP-KTRSSSSPRKL 189

[Close]
BLAST of CsaV3_3G026270 vs. NCBI nr
Match: XP_022949222.1 (auxin-induced protein 22A-like [Cucurbita moschata])

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 140/196 (71.43%), Postives = 158/196 (80.61%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFC---------ESSSTNNDGGDQPF 67
           MASNG+ELEITELRLGLPGSG   TSSSK++ KRVF          E SS + DGGD+  
Sbjct: 1   MASNGLELEITELRLGLPGSG--HTSSSKHDNKRVFSEMNGNEGGDERSSNDCDGGDRRC 60

Query: 68  PKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYS 127
            K+ QVVGWPPVCS+RRRS  +GN+KDLS  ET K+YVK+SMDGAPYLRKVDLG HKGYS
Sbjct: 61  SKKTQVVGWPPVCSYRRRS--NGNDKDLS--ETLKMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 128 DLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFE 187
           DL +AMENLFG A+G SD+V IYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFE
Sbjct: 121 DLGMAMENLFGCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 188 IHVPSETLSSSSSKEL 195
           I VP +T S SS ++L
Sbjct: 181 IQVP-KTRSCSSPRKL 189

[Close]
BLAST of CsaV3_3G026270 vs. NCBI nr
Match: XP_022998150.1 (auxin-induced protein 22A-like [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 2.2e-66
Identity = 139/196 (70.92%), Postives = 159/196 (81.12%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFC---------ESSSTNNDGGDQPF 67
           MASNG+ELEITELRLGLPGS    TSSSK++ KRVF          E SS + DGGD+ +
Sbjct: 1   MASNGLELEITELRLGLPGSR--HTSSSKHDNKRVFSEMNGNEGGDERSSNDCDGGDRRY 60

Query: 68  PKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYS 127
            K+NQVVGWPPVCS+RRRS  +GN+KDLS  +T K+YVK+SMDGAPYLRKVDLG HKGYS
Sbjct: 61  SKKNQVVGWPPVCSYRRRS--NGNDKDLS--KTLKMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 128 DLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFE 187
           DL +AMENLF  A+G SD+V IYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFE
Sbjct: 121 DLGMAMENLFSCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 188 IHVPSETLSSSSSKEL 195
           I VP +T SSSS ++L
Sbjct: 181 IQVP-KTRSSSSPRKL 189

[Close]
BLAST of CsaV3_3G026270 vs. NCBI nr
Match: XP_008447488.1 (PREDICTED: auxin-induced protein 22A-like [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 3.7e-61
Identity = 127/187 (67.91%), Postives = 131/187 (70.05%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSG C TS                                  
Sbjct: 1   MASNGVELEITELRLGLPGSGSCHTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
                           K LSETE PK+YVKI MDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  XXXXXXXXXXXXXXXXKGLSETEAPKMYVKIGMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWML+GDVPWNMF+ESCKRLRIMKR+E KGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLLGDVPWNMFIESCKRLRIMKRSEAKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

[Close]
BLAST of CsaV3_3G026270 vs. TAIR10
Match: AT3G15540.1 (indole-3-acetic acid inducible 19)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-43
Identity = 101/197 (51.27%), Postives = 125/197 (63.45%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCE----SSSTNND---------GG 67
           M   G+ LEITELRLGLPG    R  + K  KKR F E    SS +N+D         GG
Sbjct: 1   MEKEGLGLEITELRLGLPG----RDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGG 60

Query: 68  ------DQPFPKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRK 127
                 D P  K +QVVGWPPVCS+R+++S     K+ S T+    YVK+SMDG PYLRK
Sbjct: 61  DAEKVNDSPAAK-SQVVGWPPVCSYRKKNS----CKEASTTKVGLGYVKVSMDGVPYLRK 120

Query: 128 VDLGSHKGYSDLVVAMENLFG-SALGCS-------DFVLIYEDRDGDWMLVGDVPWNMFV 178
           +DLGS +GY DL  A++ LFG   +G +       ++V IYED+DGDWML GDVPW MF+
Sbjct: 121 MDLGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFL 180

[Close]
BLAST of CsaV3_3G026270 vs. TAIR10
Match: AT1G52830.1 (indole-3-acetic acid 6)

HSP 1 Score: 164.1 bits (414), Expect = 8.8e-41
Identity = 92/191 (48.17%), Postives = 120/191 (62.83%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTS--SSKNEKKRVFCE-----SSSTNNDGG------ 67
           MA  G+ LEITELRLGLPG      S   S  +KKRV  +     +  T N+        
Sbjct: 1   MAKEGLALEITELRLGLPGDNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVE 60

Query: 68  DQPFP-KRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGS 127
           D+  P  ++Q VGWPPVCS+RR+     NN++ S+      YVK+SMDG PY+RK+DLGS
Sbjct: 61  DESLPVVKSQAVGWPPVCSYRRKK----NNEEASKAIG---YVKVSMDGVPYMRKIDLGS 120

Query: 128 HKGYSDLVVAMENLFGS-ALGCS------DFVLIYEDRDGDWMLVGDVPWNMFVESCKRL 178
              Y +LV  +ENLFG   +G +      ++++IYED+D DWMLVGDVPW MF ESCKRL
Sbjct: 121 SNSYINLVTVLENLFGCLGIGVAKEGKKCEYIIIYEDKDRDWMLVGDVPWQMFKESCKRL 180

[Close]
BLAST of CsaV3_3G026270 vs. TAIR10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 161.0 bits (406), Expect = 7.4e-40
Identity = 92/185 (49.73%), Postives = 116/185 (62.70%), Query Frame = 0 

Query: 13  VELEITELRLGLPGSGGC-----RTSSSKNEKKRVF-------CESSSTNNDGGDQPFPK 72
           V L+ TELRLGLPG+        R S   N  KRV         ESSS   +      P+
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSP---PR 64

Query: 73  RNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDL 132
           + Q+VGWPPV S+R+ +  S  N+  SE E   IYVK+SMDGAPYLRK+DL  +KGYS+L
Sbjct: 65  KAQIVGWPPVRSYRKNNIQSKKNE--SEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSEL 124

Query: 133 VVAMENLFGSALG---------CSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKR 177
           + A+E +F  ++G          SDFV  YED+DGDWML+GDVPW MF+ +CKRLRIMK 
Sbjct: 125 LKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKG 184

[Close]
BLAST of CsaV3_3G026270 vs. TAIR10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-38
Identity = 87/176 (49.43%), Postives = 112/176 (63.64%), Query Frame = 0 

Query: 13  VELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDG---GDQPFPKRNQVVGWPP 72
           V L+ TELRLGLPG+    T S     KRV  E++    +     +   P + Q+VGWPP
Sbjct: 11  VNLKATELRLGLPGTE--ETVSCGKSNKRVLPEATEKEIESTGKTETASPPKAQIVGWPP 70

Query: 73  VCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENLFG 132
           V S+R+ +  +      SE+E    YVK+SMDGAPYLRK+DL  +K Y +L+ ++EN+F 
Sbjct: 71  VRSYRKNNVQTKK----SESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK 130

Query: 133 SALG---------CSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKG 177
            ++G          SDFV  YED+DGDWMLVGDVPW MFV SCKRLRIMK +EVKG
Sbjct: 131 FSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKG 180

[Close]
BLAST of CsaV3_3G026270 vs. TAIR10
Match: AT1G15580.1 (indole-3-acetic acid inducible 5)

HSP 1 Score: 144.8 bits (364), Expect = 5.5e-35
Identity = 86/173 (49.71%), Postives = 109/173 (63.01%), Query Frame = 0 

Query: 10  SNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGWPP 69
           SN + LEITELRLGLPG       S   +K+     S     D   +P  K++QVVGWPP
Sbjct: 5   SNNLGLEITELRLGLPGDIVVSGESISGKKR----ASPEVEIDLKCEP-AKKSQVVGWPP 64

Query: 70  VCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENLFG 129
           VCS+RR++S       L  T++   YVK+S+DGA +LRK+DL  +K Y DL  A++ LFG
Sbjct: 65  VCSYRRKNS-------LERTKSS--YVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFG 124

Query: 130 ------SALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKG 177
                   L  S+ V IYED+DGDWML GDVPW MF+ SCKRLRIMKR+  +G
Sbjct: 125 CYINFDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRSCNRG 163

[Close]
BLAST of CsaV3_3G026270 vs. Swiss-Prot
Match: sp|P13088|AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 99/186 (53.23%), Postives = 126/186 (67.74%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLP-GSGGCRTSSSKNEKKRVFCE------SSSTNNDGGDQPF-P 67
           MA  G+ LEITELRLGLP         + KNEKKR F E        ++++ GGD+    
Sbjct: 1   MAKEGLGLEITELRLGLPDAEHQVSVVNKKNEKKRAFSEIDDGVGDENSSSGGGDRKMET 60

Query: 68  KRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSD 127
            ++QVVGWPPVCS+R+++S    N+  S     K+YVK+SMDGAP+LRK+DLG HKGYSD
Sbjct: 61  NKSQVVGWPPVCSYRKKNS---MNEGAS-----KMYVKVSMDGAPFLRKIDLGLHKGYSD 120

Query: 128 LVVAMENLFG--------SALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKR 178
           L +A++ LFG             S+ V IYED+DGDWMLVGDVPW MF+ESCKRLRIMK+
Sbjct: 121 LALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKK 178

[Close]
BLAST of CsaV3_3G026270 vs. Swiss-Prot
Match: sp|P32293|AX22A_VIGRR (Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-44
Identity = 96/186 (51.61%), Postives = 118/186 (63.44%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEK--KRVFCESSSTNNDG------GDQPFP 67
           MA  G+ LEITELRLGLP +     ++   EK  KRVF E     ++         +   
Sbjct: 1   MAKEGLGLEITELRLGLPDAEHVAVANKNGEKKNKRVFSEIDDVGDENXXXXXXXXRKME 60

Query: 68  KRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSD 127
            +NQVVGWPPVCS+R+++         S  E  K+YVK+SMDGAP+LRK+DLG HKGYSD
Sbjct: 61  NKNQVVGWPPVCSYRKKN---------SVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSD 120

Query: 128 LVVAMENLFG--------SALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKR 178
           L  A+E LFG          +   + V IYED+DGDWMLVGDVPW MF+ESCKRLRIMKR
Sbjct: 121 LAFALEKLFGCYGMVEALKNVENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKR 177

[Close]
BLAST of CsaV3_3G026270 vs. Swiss-Prot
Match: sp|P49680|IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum OX=3888 GN=IAA6 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 98/185 (52.97%), Postives = 121/185 (65.41%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCE---SSSTNNDGGD-QPFPKRNQ 67
           MA  G+ LEITELRLGL     C     KNEKKR+F E       N   GD +   K+NQ
Sbjct: 1   MAREGLGLEITELRLGL----SC-GEPKKNEKKRMFSEIDGGVEENGGSGDRKSVDKKNQ 60

Query: 68  VVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVA 127
           VVGWPPVCS+R+++   G+          K+Y+K+SMDGAPYLRK+DL  HKGY +L +A
Sbjct: 61  VVGWPPVCSYRKKNMNEGS----------KMYMKVSMDGAPYLRKIDLCLHKGYLELALA 120

Query: 128 MENLFG---------SALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEV 180
           +E LF           A  C + V IYED+DGDWMLVGDVPW MF+ESCKRLRIMKR++ 
Sbjct: 121 LEKLFDCCGIEEALKDAENC-EHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDA 169

[Close]
BLAST of CsaV3_3G026270 vs. Swiss-Prot
Match: sp|O24409|IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-42
Identity = 101/197 (51.27%), Postives = 125/197 (63.45%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCE----SSSTNND---------GG 67
           M   G+ LEITELRLGLPG    R  + K  KKR F E    SS +N+D         GG
Sbjct: 1   MEKEGLGLEITELRLGLPG----RDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGG 60

Query: 68  ------DQPFPKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRK 127
                 D P  K +QVVGWPPVCS+R+++S     K+ S T+    YVK+SMDG PYLRK
Sbjct: 61  DAEKVNDSPAAK-SQVVGWPPVCSYRKKNS----CKEASTTKVGLGYVKVSMDGVPYLRK 120

Query: 128 VDLGSHKGYSDLVVAMENLFG-SALGCS-------DFVLIYEDRDGDWMLVGDVPWNMFV 178
           +DLGS +GY DL  A++ LFG   +G +       ++V IYED+DGDWML GDVPW MF+
Sbjct: 121 MDLGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFL 180

[Close]
BLAST of CsaV3_3G026270 vs. Swiss-Prot
Match: sp|O24541|AX22C_VIGRR (Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.8e-41
Identity = 92/186 (49.46%), Postives = 116/186 (62.37%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGS--GGCRTSSSKNEKKRVFC----ESSSTNNDGGDQPFPKR 67
           M    + LEITELRLGLPG+                VF     E+SS+  DG  +    +
Sbjct: 1   MEKEDLGLEITELRLGLPGAXXXXXXXXXXXXXXXXVFSDIEGENSSSEEDGKKE---TK 60

Query: 68  NQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLV 127
           NQVVGWPPVCS+R++++             PK+YVK+SMDGAP+LRK+DL  HKGYSDL 
Sbjct: 61  NQVVGWPPVCSYRKKNT----------VNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLA 120

Query: 128 VAMENLFGSALGC--------SDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTE 180
            A++  FG    C        ++ V IYED+DGDWMLVGDVPW MF ESCKRLRIMKR++
Sbjct: 121 FALDKFFGCYGICEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSD 173

[Close]
BLAST of CsaV3_3G026270 vs. TrEMBL
Match: tr|A0A0A0L852|A0A0A0L852_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G516540 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 4.0e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
           PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

[Close]
BLAST of CsaV3_3G026270 vs. TrEMBL
Match: tr|A0A1S3BI60|A0A1S3BI60_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489925 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.4e-61
Identity = 127/187 (67.91%), Postives = 131/187 (70.05%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSG C TS                                  
Sbjct: 1   MASNGVELEITELRLGLPGSGSCHTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
                           K LSETE PK+YVKI MDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  XXXXXXXXXXXXXXXXKGLSETEAPKMYVKIGMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWML+GDVPWNMF+ESCKRLRIMKR+E KGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLLGDVPWNMFIESCKRLRIMKRSEAKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

[Close]
BLAST of CsaV3_3G026270 vs. TrEMBL
Match: tr|A0A061GAT9|A0A061GAT9_THECC (Auxin-responsive protein OS=Theobroma cacao OX=3641 GN=TCM_028602 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52
Identity = 112/194 (57.73%), Postives = 134/194 (69.07%), Query Frame = 0 

Query: 8   MASNGVELEITELRLGLPGSG--GCRTSSSKNEKKRVFCESSSTNNDG---GDQPFPKRN 67
           MA  G+ LEITELRLGLPG G    +    KNEKKRVF E S  N +G    DQ    ++
Sbjct: 1   MAKEGLGLEITELRLGLPGGGAHSAQHGMDKNEKKRVFSEISEDNENGKISNDQKMQSKS 60

Query: 68  QVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVV 127
           QVVGWPPVCS+R+++S S   + L  ++  KIYVK+SMDGAP+LRK+DLG HKGYSDL  
Sbjct: 61  QVVGWPPVCSYRKKNSFS---EKLDGSKASKIYVKVSMDGAPFLRKIDLGMHKGYSDLAT 120

Query: 128 AMENLFGSAL---GCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEI 187
           A+E LFG AL      +FV IYED+DGDWML GDVPW MF+ESCKRLRIMKR + KGF +
Sbjct: 121 ALEMLFGEALRDAESCEFVPIYEDKDGDWMLAGDVPWEMFIESCKRLRIMKRADAKGFGV 180

Query: 188 HVPSETLSSSSSKE 194
               E L+ S   E
Sbjct: 181 LRSREALNGSLKNE 191

[Close]
BLAST of CsaV3_3G026270 vs. TrEMBL
Match: tr|A0A1S3BHJ0|A0A1S3BHJ0_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489924 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.7e-51
Identity = 110/189 (58.20%), Postives = 136/189 (71.96%), Query Frame = 0 

Query: 5   ITKMASNGVELEITELRLGLPGSGGCRTSSSK-NEKKRVFCE---SSSTNNDGGDQPFPK 64
           +T+MA+ G++LEITELRLGLPG  G   S+SK NEKKRVF E      +   G D+   +
Sbjct: 1   MTQMAAKGLDLEITELRLGLPGDCGSLISTSKNNEKKRVFSEVEVEDKSRAKGEDE--GR 60

Query: 65  RNQVVGWPPVCSHRRRSSGSGNNKDLSE-----TETPKIYVKISMDGAPYLRKVDLGSHK 124
           R QVVGWPPVCS+R+RSS  G  +  SE         ++YVK+S +G P+LRKVDLG  K
Sbjct: 61  RKQVVGWPPVCSYRQRSSFKGKGECESEGIMNMGMKKQMYVKVSFEGTPFLRKVDLGMVK 120

Query: 125 GYSDLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVK 184
           GY DLV AME LFGS +GC ++ + YEDRDGDWMLVGDVPW MF+ESCKRLRIMK+TE K
Sbjct: 121 GYGDLVGAMEKLFGSPIGCYEYTVTYEDRDGDWMLVGDVPWKMFIESCKRLRIMKKTEGK 180

[Close]
BLAST of CsaV3_3G026270 vs. TrEMBL
Match: tr|Q9SSY3|Q9SSY3_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=CsIAA1 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.3e-50
Identity = 107/190 (56.32%), Postives = 135/190 (71.05%), Query Frame = 0 

Query: 5   ITKMASNGVELEITELRLGLPGSGGCRTSSSK-NEKKRVFCE---SSSTNNDGGDQPFPK 64
           +T++A+ G++LEITELRLGLPG      S+SK NEKKRVF E      + + G D+   +
Sbjct: 1   MTQVAAKGLDLEITELRLGLPGDCCSLISTSKNNEKKRVFSEVEVEDKSRSKGEDE--GR 60

Query: 65  RNQVVGWPPVCSHRRRSSGSGNNKDLSETE------TPKIYVKISMDGAPYLRKVDLGSH 124
           R QVVGWPPVCS+RRR+S  G  +     E        ++YVK+S +G P+LRKVDLG  
Sbjct: 61  RKQVVGWPPVCSYRRRNSFKGKGEQCESEEIMNMGMKKQMYVKVSFEGTPFLRKVDLGMV 120

Query: 125 KGYSDLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEV 184
           KGY DLV AME LFGS +GC ++ + YEDRDGDWMLVGDVPW MF+ESCKRLRIMK+TE 
Sbjct: 121 KGYGDLVGAMEKLFGSPIGCYEYTVTYEDRDGDWMLVGDVPWKMFIESCKRLRIMKKTEG 180

The following BLAST results are available for this feature:
BLAST of CsaV3_3G026270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149851.26.0e-104100.00PREDICTED: auxin-induced protein 22A-like [Cucumis sativus] >KGN58115.1 hypothet... [more]
XP_023525671.11.2e-6771.94auxin-induced protein 22A-like [Cucurbita pepo subsp. pepo][more]
XP_022949222.11.3e-6671.43auxin-induced protein 22A-like [Cucurbita moschata][more]
XP_022998150.12.2e-6670.92auxin-induced protein 22A-like [Cucurbita maxima][more]
XP_008447488.13.7e-6167.91PREDICTED: auxin-induced protein 22A-like [Cucumis melo][more]
BLAST of CsaV3_3G026270 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G15540.11.1e-4351.27indole-3-acetic acid inducible 19[more]
AT1G52830.18.8e-4148.17indole-3-acetic acid 6[more]
AT1G04240.17.4e-4049.73AUX/IAA transcriptional regulator family protein[more]
AT5G43700.15.3e-3849.43AUX/IAA transcriptional regulator family protein[more]
AT1G15580.15.5e-3549.71indole-3-acetic acid inducible 5[more]
BLAST of CsaV3_3G026270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P13088|AUX22_SOYBN3.3e-4553.23Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1[more]
sp|P32293|AX22A_VIGRR1.6e-4451.61Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 S... [more]
sp|P49680|IAA6_PEA1.1e-4352.97Auxin-induced protein IAA6 OS=Pisum sativum OX=3888 GN=IAA6 PE=2 SV=1[more]
sp|O24409|IAA19_ARATH2.0e-4251.27Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=... [more]
sp|O24541|AX22C_VIGRR3.8e-4149.46Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 S... [more]
BLAST of CsaV3_3G026270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L852|A0A0A0L852_CUCSA4.0e-104100.00Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G516540 PE=3 SV=1[more]
tr|A0A1S3BI60|A0A1S3BI60_CUCME2.4e-6167.91Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489925 PE=3 SV=1[more]
tr|A0A061GAT9|A0A061GAT9_THECC1.6e-5257.73Auxin-responsive protein OS=Theobroma cacao OX=3641 GN=TCM_028602 PE=3 SV=1[more]
tr|A0A1S3BHJ0|A0A1S3BHJ0_CUCME8.7e-5158.20Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489924 PE=3 SV=1[more]
tr|Q9SSY3|Q9SSY3_CUCSA4.3e-5056.32Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=CsIAA1 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000270PB1_dom
IPR003311AUX_IAA
IPR033389AUX/IAA_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G026270.1CsaV3_3G026270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 87..183
e-value: 2.2E-34
score: 119.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..88
NoneNo IPR availablePANTHERPTHR31734:SF12SUBFAMILY NOT NAMEDcoord: 12..181
NoneNo IPR availableSUPERFAMILYSSF54277CAD & PB1 domainscoord: 86..170
IPR033389AUX/IAA domainPFAMPF02309AUX_IAAcoord: 132..176
e-value: 1.3E-23
score: 84.1
coord: 44..130
e-value: 4.0E-21
score: 75.9
IPR003311AUX/IAA proteinPANTHERPTHR31734FAMILY NOT NAMEDcoord: 12..181
IPR000270PB1 domainPROSITEPS51745PB1coord: 93..184
score: 25.91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G026270CSPI03G24500Wild cucumber (PI 183967)cpicucB144
CsaV3_3G026270CSPI07G21090Wild cucumber (PI 183967)cpicucB399
CsaV3_3G026270Cucsa.300850Cucumber (Gy14) v1cgycucB464
CsaV3_3G026270CmaCh14G013190Cucurbita maxima (Rimu)cmacucB0284
CsaV3_3G026270CmaCh01G001190Cucurbita maxima (Rimu)cmacucB0540
CsaV3_3G026270CmaCh17G008260Cucurbita maxima (Rimu)cmacucB0427
CsaV3_3G026270CmoCh01G001250Cucurbita moschata (Rifu)cmocucB0524
CsaV3_3G026270CmoCh14G013540Cucurbita moschata (Rifu)cmocucB0275
CsaV3_3G026270CmoCh17G007960Cucurbita moschata (Rifu)cmocucB0422
CsaV3_3G026270Cp4.1LG02g14700Cucurbita pepo (Zucchini)cpecucB0696
CsaV3_3G026270CsGy7G019380Cucumber (Gy14) v2cgybcucB334
CsaV3_3G026270CsGy3G023280Cucumber (Gy14) v2cgybcucB117
CsaV3_3G026270Carg06491Silver-seed gourdcarcucB0135
CsaV3_3G026270Carg04252Silver-seed gourdcarcucB0227
CsaV3_3G026270Carg09552Silver-seed gourdcarcucB1072
CsaV3_3G026270Cla012685Watermelon (97103) v1cucwmB226
CsaV3_3G026270Cla015414Watermelon (97103) v1cucwmB198
CsaV3_3G026270MELO3C023370Melon (DHL92) v3.5.1cucmeB191
CsaV3_3G026270MELO3C012951Melon (DHL92) v3.5.1cucmeB220
CsaV3_3G026270ClCG09G002350Watermelon (Charleston Gray)cucwcgB186
CsaV3_3G026270ClCG07G012950Watermelon (Charleston Gray)cucwcgB263
CsaV3_3G026270Lsi02G027610Bottle gourd (USVL1VR-Ls)cuclsiB198
CsaV3_3G026270Lsi07G004920Bottle gourd (USVL1VR-Ls)cuclsiB255
CsaV3_3G026270MELO3C012951.2Melon (DHL92) v3.6.1cucmedB213
CsaV3_3G026270MELO3C028973.2Melon (DHL92) v3.6.1cucmedB182
CsaV3_3G026270Cla97C07G139770Watermelon (97103) v2cucwmbB243
CsaV3_3G026270Cla97C09G164500Watermelon (97103) v2cucwmbB258
CsaV3_3G026270Bhi01G002658Wax gourdcucwgoB275
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_3G026270CsaV3_7G032960Cucumber (Chinese Long) v3cuccucB162
The following block(s) are covering this gene:

None