CsaUNG008270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsaUNG008270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSNF2 domain-containing protein
LocationScaffold000122 : 120556 .. 121435 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGACTAACCTTATAGAAATTAGTTCATCAGACAGTGATGTAGATCTAGAATATATTAGTGACAGTGACGACGATGTTGCACTAAATATTGGGGAATCTAGTGGCAGTAGAAAGCTCCCTTATTGGGCATCCACAGATTATAGTCCAGGTCAAAGTGAGTTTTGCACAAGACTATTAAATTATTTTTTATGCTTTCTCTAAAGAAATCTTATAAAGTGGAAAAAACTGAATCAAATTTACAGGTAATGTTAATAACAGTCTGCATTCTGGTTCTAATGGTGACACTAGAGCCTCAAATCATCATATTGTCCTCACAGACGATACCAATTATCTTACTGAAAATGGGAATACTGGTCTTCCTCGAACTGTGAATTCTCGAATTGCAACCACAGCCGGTGCAGATTATGAAAGATTATCTTCTCAACAGGCTTTTAAGAGGACCCTGCCTTATACCTCTCAGTCATATGCACCCCTCACAAAATCAAATAACTTAGTCGACAATGTGGGCAGCAGTCAAAGTCGTGATGCCCCCATCAGTTATGATTCAGGAAGGCCAAGTTCAACTACTGGCAGGTTTTATGGGAGAGAAATTTTTTTCAGAGGCAATGGTGACGATACCATTAGTTCTGAGAACAGGGATTATAGAATCCTCCCTGCGAGTTGGGCACCAGGGAAACCTATTCCTTCACAGTATCCAGGTGAACATCCCCATCGTCCTGGTTATGGTGAAGAAATGGTGGCTGGAGGTGATGAGAGATTGATTTATCAAGCAGCATTGGAGGTATTTATTTATTTGATAAAAGTATTGGAGGTATTTTGGTATAACATTATCCTGGCTATTTTATTTTCAAAGGTTCCACATTTTCAGAAGTAG

mRNA sequence

ATGTCTGTGACTAACCTTATAGAAATTAGTTCATCAGACAGTGATGTAGATCTAGAATATATTAGTGACAGTGACGACGATGTTGCACTAAATATTGGGGAATCTAGTGGCAGTAGAAAGCTCCCTTATTGGGCATCCACAGATTATAGTCCAGGTCAAAGTAATGTTAATAACAGTCTGCATTCTGGTTCTAATGGTGACACTAGAGCCTCAAATCATCATATTGTCCTCACAGACGATACCAATTATCTTACTGAAAATGGGAATACTGGTCTTCCTCGAACTGTGAATTCTCGAATTGCAACCACAGCCGGTGCAGATTATGAAAGATTATCTTCTCAACAGGCTTTTAAGAGGACCCTGCCTTATACCTCTCAGTCATATGCACCCCTCACAAAATCAAATAACTTAGTCGACAATGTGGGCAGCAGTCAAAGTCGTGATGCCCCCATCAGTTATGATTCAGGAAGGCCAAGTTCAACTACTGGCAGGTTTTATGGGAGAGAAATTTTTTTCAGAGGCAATGGTGACGATACCATTAGTTCTGAGAACAGGGATTATAGAATCCTCCCTGCGAGTTGGGCACCAGGGAAACCTATTCCTTCACAGTATCCAGGTGAACATCCCCATCGTCCTGGTTATGGTGAAGAAATGGTGGCTGGAGGTGATGAGAGATTGATTTATCAAGCAGCATTGGAGGTTCCACATTTTCAGAAGTAG

Coding sequence (CDS)

ATGTCTGTGACTAACCTTATAGAAATTAGTTCATCAGACAGTGATGTAGATCTAGAATATATTAGTGACAGTGACGACGATGTTGCACTAAATATTGGGGAATCTAGTGGCAGTAGAAAGCTCCCTTATTGGGCATCCACAGATTATAGTCCAGGTCAAAGTAATGTTAATAACAGTCTGCATTCTGGTTCTAATGGTGACACTAGAGCCTCAAATCATCATATTGTCCTCACAGACGATACCAATTATCTTACTGAAAATGGGAATACTGGTCTTCCTCGAACTGTGAATTCTCGAATTGCAACCACAGCCGGTGCAGATTATGAAAGATTATCTTCTCAACAGGCTTTTAAGAGGACCCTGCCTTATACCTCTCAGTCATATGCACCCCTCACAAAATCAAATAACTTAGTCGACAATGTGGGCAGCAGTCAAAGTCGTGATGCCCCCATCAGTTATGATTCAGGAAGGCCAAGTTCAACTACTGGCAGGTTTTATGGGAGAGAAATTTTTTTCAGAGGCAATGGTGACGATACCATTAGTTCTGAGAACAGGGATTATAGAATCCTCCCTGCGAGTTGGGCACCAGGGAAACCTATTCCTTCACAGTATCCAGGTGAACATCCCCATCGTCCTGGTTATGGTGAAGAAATGGTGGCTGGAGGTGATGAGAGATTGATTTATCAAGCAGCATTGGAGGTTCCACATTTTCAGAAGTAG

Protein sequence

MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSLHSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRTLPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIPSQYPGEHPHRPGYGEEMVAGGDERLIYQAALEVPHFQK*
Homology
[Close]
BLAST of CsaUNG008270 vs. Swiss-Prot
Match: CHR28_ARATH (Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana GN=CHR28 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-10
Identity = 73/229 (31.88%), Postives = 87/229 (37.99%), Query Frame = 1 

Query: 11  SSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSLHSG-SNGDTR 70
           SSDSDV+++            I E S  R L        S   S  N    +G +N D+R
Sbjct: 8   SSDSDVEIQETRTRPQHPP-RIAEGSHRRDLSTLRPHFLSGSSSGANGHTKTGLTNLDSR 67

Query: 71  ASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRTLPYTSQSYA 130
                  L    ++    GN  +   V SRI   +  DYE+ SSQQAFKRT P T     
Sbjct: 68  NGFESKPLPRAEHHTHIPGNGSI---VTSRIPNISVGDYEKFSSQQAFKRTHPPT----- 127

Query: 131 PLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI--SSENRDY 190
                                 S     P    G   G    FRG   D +         
Sbjct: 128 ---------------------FSRPPFPPRPDIGTSNGNASHFRGGAHDDLGMGRVTNGT 187

Query: 191 RILPASWAPG-KPIPSQYPG--EHPHRPGYGEEMVAGGDERLIYQAALE 234
           RILP S A G    PS + G  +  HR G GEE  +  DERLIYQAAL+
Sbjct: 188 RILPPSVAHGTSASPSHFNGLSDPMHRNGIGEERNSENDERLIYQAALQ 206

[Close]
BLAST of CsaUNG008270 vs. Swiss-Prot
Match: CHR27_ARATH (Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana GN=CHR27 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07
Identity = 51/156 (32.69%), Postives = 70/156 (44.87%), Query Frame = 1 

Query: 13  DSDVDLEYISDSDDDVALN-IGESSGSRKLPYWAS------TDYSPGQSNVNNSLHSGSN 72
           DS +++   SDSDD+V    +   + +R  P W S       D      + N +  +G++
Sbjct: 2   DSAIEISSGSDSDDEVPPQPVWPQTRTRMDPTWLSRRPLPTVDSHARAEHTNQAPPNGAS 61

Query: 73  GDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRTLPYTS 132
            DT            +   T NGNT     VNSRI++ +GADY RLSS+QA KRTLP + 
Sbjct: 62  SDTSRPGV-------SKPFTGNGNT-----VNSRISSGSGADYVRLSSEQALKRTLPPSF 121

Query: 133 QS-YAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSS 161
            S   P     N + N   S+     +  D  RP S
Sbjct: 122 NSPPLPARSGTNNISNASGSR-----VGVDYERPLS 140


HSP 2 Score: 53.5 bits (127), Expect = 3.6e-06
Identity = 62/213 (29.11%), Postives = 84/213 (39.44%), Query Frame = 1 

Query: 42  PYWASTDYS-PGQSN--------VNNSLHSGSNGD-TRASNHHIVLT------DDTNYLT 101
           P  AS+D S PG S         VN+ + SGS  D  R S+   +        +      
Sbjct: 57  PNGASSDTSRPGVSKPFTGNGNTVNSRISSGSGADYVRLSSEQALKRTLPPSFNSPPLPA 116

Query: 102 ENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRTLPYT-SQSYAPLTKSNNLVDNVGSS 161
            +G   +     SR+    G DYER  SQQA KRTLP + +    P     N + N G S
Sbjct: 117 RSGTNNISNASGSRV----GVDYERPLSQQALKRTLPPSFNPPPLPSRSGTNNIRNAGGS 176

Query: 162 QSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIPSQY 221
           +       Y     S+   +    + +   + +  I       RILP S   G      +
Sbjct: 177 RFG---ADYSHPAVSAVGNKSTFGDHYSGAHAEIGIQRGVNGVRILPPSLTHGTSASVLH 236

Query: 222 ---PGEHPHRPGYGEEMVAGGDERLIYQAALEV 235
                +  HR G GE+     DERL+YQAAL+V
Sbjct: 237 HAGSSDPMHRFGGGEDRNPDNDERLVYQAALQV 262

[Close]
BLAST of CsaUNG008270 vs. TrEMBL
Match: A0A061E321_THECC (SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related isoform 3 OS=Theobroma cacao GN=TCM_007664 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.5e-32
Identity = 105/255 (41.18%), Postives = 139/255 (54.51%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDV-------ALNIGESSG-----SRKLPYWASTD 60
           M+  N I+ISSSDSD+++E   D++          A+  G +S      S+K+P     +
Sbjct: 1   MAAMNPIDISSSDSDLEIEDDRDTNTSSLRVLPGWAVTHGSNSRGYAWQSQKIPSPKQAE 60

Query: 61  YSP-GQSNVNNS-----LHSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIAT 120
           +S    SNVNN      L    N D RAS   I L DD  Y T NGN G PRTVNSRIA 
Sbjct: 61  FSNLNFSNVNNHSQTKVLIHEPNDDVRASTQLIALDDDPEYFTRNGNIGQPRTVNSRIAN 120

Query: 121 TAGADYERLSSQQAFKRTLPYTSQSYAPLTKSNNLVDNVGSSQSRDAP-ISYDSGRPSST 180
            +G D+E+L+SQQA KRTLP + Q   P  KS NLV+N+ SSQ  DA   S+     S  
Sbjct: 121 GSGTDFEKLTSQQALKRTLPPSLQLSGPSAKSENLVENLSSSQIPDAQGSSHHLAGHSFA 180

Query: 181 TGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIP-SQYPG--EHPHRPGYGEEM 234
             + Y R+ + R +  + +   N   RILP S+  GK +  +Q+ G  +  +R G  EE 
Sbjct: 181 NSQGYMRDHYSRAHNGEVMMYGNTGSRILPPSFMHGKSVTYTQFAGLDDPVYRAGVSEER 240

[Close]
BLAST of CsaUNG008270 vs. TrEMBL
Match: A0A061E9R6_THECC (SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related isoform 4 OS=Theobroma cacao GN=TCM_007664 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.5e-32
Identity = 105/255 (41.18%), Postives = 139/255 (54.51%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDV-------ALNIGESSG-----SRKLPYWASTD 60
           M+  N I+ISSSDSD+++E   D++          A+  G +S      S+K+P     +
Sbjct: 1   MAAMNPIDISSSDSDLEIEDDRDTNTSSLRVLPGWAVTHGSNSRGYAWQSQKIPSPKQAE 60

Query: 61  YSP-GQSNVNNS-----LHSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIAT 120
           +S    SNVNN      L    N D RAS   I L DD  Y T NGN G PRTVNSRIA 
Sbjct: 61  FSNLNFSNVNNHSQTKVLIHEPNDDVRASTQLIALDDDPEYFTRNGNIGQPRTVNSRIAN 120

Query: 121 TAGADYERLSSQQAFKRTLPYTSQSYAPLTKSNNLVDNVGSSQSRDAP-ISYDSGRPSST 180
            +G D+E+L+SQQA KRTLP + Q   P  KS NLV+N+ SSQ  DA   S+     S  
Sbjct: 121 GSGTDFEKLTSQQALKRTLPPSLQLSGPSAKSENLVENLSSSQIPDAQGSSHHLAGHSFA 180

Query: 181 TGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIP-SQYPG--EHPHRPGYGEEM 234
             + Y R+ + R +  + +   N   RILP S+  GK +  +Q+ G  +  +R G  EE 
Sbjct: 181 NSQGYMRDHYSRAHNGEVMMYGNTGSRILPPSFMHGKSVTYTQFAGLDDPVYRAGVSEER 240

[Close]
BLAST of CsaUNG008270 vs. TrEMBL
Match: A0A061E3U9_THECC (SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related isoform 2 OS=Theobroma cacao GN=TCM_007664 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.5e-32
Identity = 105/255 (41.18%), Postives = 139/255 (54.51%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDV-------ALNIGESSG-----SRKLPYWASTD 60
           M+  N I+ISSSDSD+++E   D++          A+  G +S      S+K+P     +
Sbjct: 1   MAAMNPIDISSSDSDLEIEDDRDTNTSSLRVLPGWAVTHGSNSRGYAWQSQKIPSPKQAE 60

Query: 61  YSP-GQSNVNNS-----LHSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIAT 120
           +S    SNVNN      L    N D RAS   I L DD  Y T NGN G PRTVNSRIA 
Sbjct: 61  FSNLNFSNVNNHSQTKVLIHEPNDDVRASTQLIALDDDPEYFTRNGNIGQPRTVNSRIAN 120

Query: 121 TAGADYERLSSQQAFKRTLPYTSQSYAPLTKSNNLVDNVGSSQSRDAP-ISYDSGRPSST 180
            +G D+E+L+SQQA KRTLP + Q   P  KS NLV+N+ SSQ  DA   S+     S  
Sbjct: 121 GSGTDFEKLTSQQALKRTLPPSLQLSGPSAKSENLVENLSSSQIPDAQGSSHHLAGHSFA 180

Query: 181 TGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIP-SQYPG--EHPHRPGYGEEM 234
             + Y R+ + R +  + +   N   RILP S+  GK +  +Q+ G  +  +R G  EE 
Sbjct: 181 NSQGYMRDHYSRAHNGEVMMYGNTGSRILPPSFMHGKSVTYTQFAGLDDPVYRAGVSEER 240

[Close]
BLAST of CsaUNG008270 vs. TrEMBL
Match: A0A061E243_THECC (SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related isoform 1 OS=Theobroma cacao GN=TCM_007664 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.6e-32
Identity = 109/266 (40.98%), Postives = 138/266 (51.88%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWA--------STDY--- 60
           M+  N I+ISSSDSD+++E   D++         +S  R LP WA         T Y   
Sbjct: 60  MAAMNPIDISSSDSDLEIEDDRDTN---------TSSLRVLPGWAVTHGSNSRGTGYAWQ 119

Query: 61  -----SPGQ--------SNVNNS-----LHSGSNGDTRASNHHIVLTDDTNYLTENGNTG 120
                SP Q        SNVNN      L    N D RAS   I L DD  Y T NGN G
Sbjct: 120 SQKIPSPKQAEFSNLNFSNVNNHSQTKVLIHEPNDDVRASTQLIALDDDPEYFTRNGNIG 179

Query: 121 LPRTVNSRIATTAGADYERLSSQQAFKRTLPYTSQSYAPLTKSNNLVDNVGSSQSRDAP- 180
            PRTVNSRIA  +G D+E+L+SQQA KRTLP + Q   P  KS NLV+N+ SSQ  DA  
Sbjct: 180 QPRTVNSRIANGSGTDFEKLTSQQALKRTLPPSLQLSGPSAKSENLVENLSSSQIPDAQG 239

Query: 181 ISYDSGRPSSTTGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIP-SQYPG--E 234
            S+     S    + Y R+ + R +  + +   N   RILP S+  GK +  +Q+ G  +
Sbjct: 240 SSHHLAGHSFANSQGYMRDHYSRAHNGEVMMYGNTGSRILPPSFMHGKSVTYTQFAGLDD 299

[Close]
BLAST of CsaUNG008270 vs. TrEMBL
Match: A0A067KZQ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24472 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 103/253 (40.71%), Postives = 133/253 (52.57%), Query Frame = 1 

Query: 11  SSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPG-------QSNVNNSLH-- 70
           SSDSDV +E  SD D+     +  S+ SR LP WAS+  +         QS  NN ++  
Sbjct: 10  SSDSDVVIEDDSDFDESP---VRRSTDSRILPSWASSSGTNSRSYGGQTQSTHNNGVYAS 69

Query: 71  SGSNGDT------------------RASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATT 130
           +GS+ D                   R SN      DD+ Y   N N G  RTVNSRIA  
Sbjct: 70  NGSSSDVNELSKMRRQLQPSSSEGIRTSNRVTTKADDSLYYMGNENVGQTRTVNSRIANV 129

Query: 131 AGADYERLSSQQAFKRTLPYTSQSYAPLTKSNNLVDNVGSSQSRDA-PISYDSGRPSSTT 190
           +G DYE++SSQQA KRTLP      A L +SNNL ++  SSQ  D    +Y     S T 
Sbjct: 130 SGTDYEKISSQQALKRTLP------ASLYRSNNLAESASSSQIHDIHGNAYHLAGSSLTN 189

Query: 191 GRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIPSQYPG--EHPHRPGYGEEMVA 234
           G+ Y R+ + RGN ++ +  E+   R LP S+  GK I S   G  +H +RPG GEE+  
Sbjct: 190 GKGYMRDHYGRGNYEEIMMYESNGSRTLPPSFMHGKSISSTQFGSNDHMYRPGVGEEIAT 249

[Close]
BLAST of CsaUNG008270 vs. TAIR10
Match: AT1G50410.1 (AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related)

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-11
Identity = 73/229 (31.88%), Postives = 87/229 (37.99%), Query Frame = 1 

Query: 11  SSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSLHSG-SNGDTR 70
           SSDSDV+++            I E S  R L        S   S  N    +G +N D+R
Sbjct: 8   SSDSDVEIQETRTRPQHPP-RIAEGSHRRDLSTLRPHFLSGSSSGANGHTKTGLTNLDSR 67

Query: 71  ASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRTLPYTSQSYA 130
                  L    ++    GN  +   V SRI   +  DYE+ SSQQAFKRT P T     
Sbjct: 68  NGFESKPLPRAEHHTHIPGNGSI---VTSRIPNISVGDYEKFSSQQAFKRTHPPT----- 127

Query: 131 PLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI--SSENRDY 190
                                 S     P    G   G    FRG   D +         
Sbjct: 128 ---------------------FSRPPFPPRPDIGTSNGNASHFRGGAHDDLGMGRVTNGT 187

Query: 191 RILPASWAPG-KPIPSQYPG--EHPHRPGYGEEMVAGGDERLIYQAALE 234
           RILP S A G    PS + G  +  HR G GEE  +  DERLIYQAAL+
Sbjct: 188 RILPPSVAHGTSASPSHFNGLSDPMHRNGIGEERNSENDERLIYQAALQ 206

[Close]
BLAST of CsaUNG008270 vs. TAIR10
Match: AT3G20010.1 (AT3G20010.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related)

HSP 1 Score: 58.5 bits (140), Expect = 6.4e-09
Identity = 51/156 (32.69%), Postives = 70/156 (44.87%), Query Frame = 1 

Query: 13  DSDVDLEYISDSDDDVALN-IGESSGSRKLPYWAS------TDYSPGQSNVNNSLHSGSN 72
           DS +++   SDSDD+V    +   + +R  P W S       D      + N +  +G++
Sbjct: 2   DSAIEISSGSDSDDEVPPQPVWPQTRTRMDPTWLSRRPLPTVDSHARAEHTNQAPPNGAS 61

Query: 73  GDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRTLPYTS 132
            DT            +   T NGNT     VNSRI++ +GADY RLSS+QA KRTLP + 
Sbjct: 62  SDTSRPGV-------SKPFTGNGNT-----VNSRISSGSGADYVRLSSEQALKRTLPPSF 121

Query: 133 QS-YAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSS 161
            S   P     N + N   S+     +  D  RP S
Sbjct: 122 NSPPLPARSGTNNISNASGSR-----VGVDYERPLS 140


HSP 2 Score: 53.5 bits (127), Expect = 2.1e-07
Identity = 62/213 (29.11%), Postives = 84/213 (39.44%), Query Frame = 1 

Query: 42  PYWASTDYS-PGQSN--------VNNSLHSGSNGD-TRASNHHIVLT------DDTNYLT 101
           P  AS+D S PG S         VN+ + SGS  D  R S+   +        +      
Sbjct: 57  PNGASSDTSRPGVSKPFTGNGNTVNSRISSGSGADYVRLSSEQALKRTLPPSFNSPPLPA 116

Query: 102 ENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRTLPYT-SQSYAPLTKSNNLVDNVGSS 161
            +G   +     SR+    G DYER  SQQA KRTLP + +    P     N + N G S
Sbjct: 117 RSGTNNISNASGSRV----GVDYERPLSQQALKRTLPPSFNPPPLPSRSGTNNIRNAGGS 176

Query: 162 QSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIPSQY 221
           +       Y     S+   +    + +   + +  I       RILP S   G      +
Sbjct: 177 RFG---ADYSHPAVSAVGNKSTFGDHYSGAHAEIGIQRGVNGVRILPPSLTHGTSASVLH 236

Query: 222 ---PGEHPHRPGYGEEMVAGGDERLIYQAALEV 235
                +  HR G GE+     DERL+YQAAL+V
Sbjct: 237 HAGSSDPMHRFGGGEDRNPDNDERLVYQAALQV 262

[Close]
BLAST of CsaUNG008270 vs. NCBI nr
Match: gi|778730732|ref|XP_011659849.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 474.9 bits (1221), Expect = 8.1e-131
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSL 60
           MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSL
Sbjct: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSL 60

Query: 61  HSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRT 120
           HSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRT
Sbjct: 61  HSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRT 120

Query: 121 LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI 180
           LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI
Sbjct: 121 LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI 180

Query: 181 SSENRDYRILPASWAPGKPIPSQYPGEHPHRPGYGEEMVAGGDERLIYQAALE 234
           SSENRDYRILPASWAPGKPIPSQYPGEHPHRPGYGEEMVAGGDERLIYQAALE
Sbjct: 181 SSENRDYRILPASWAPGKPIPSQYPGEHPHRPGYGEEMVAGGDERLIYQAALE 233

[Close]
BLAST of CsaUNG008270 vs. NCBI nr
Match: gi|778730725|ref|XP_011659847.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 474.9 bits (1221), Expect = 8.1e-131
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSL 60
           MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSL
Sbjct: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSL 60

Query: 61  HSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRT 120
           HSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRT
Sbjct: 61  HSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRT 120

Query: 121 LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI 180
           LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI
Sbjct: 121 LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI 180

Query: 181 SSENRDYRILPASWAPGKPIPSQYPGEHPHRPGYGEEMVAGGDERLIYQAALE 234
           SSENRDYRILPASWAPGKPIPSQYPGEHPHRPGYGEEMVAGGDERLIYQAALE
Sbjct: 181 SSENRDYRILPASWAPGKPIPSQYPGEHPHRPGYGEEMVAGGDERLIYQAALE 233

[Close]
BLAST of CsaUNG008270 vs. NCBI nr
Match: gi|659072348|ref|XP_008465259.1| (PREDICTED: transcription termination factor 2 [Cucumis melo])

HSP 1 Score: 445.3 bits (1144), Expect = 6.9e-122
Identity = 220/233 (94.42%), Postives = 223/233 (95.71%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQSNVNNSL 60
           MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLP+WASTDYSPGQSNVNNSL
Sbjct: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPHWASTDYSPGQSNVNNSL 60

Query: 61  HSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSRIATTAGADYERLSSQQAFKRT 120
           HSG NGDTRASNHHIVLT+DTNYLTENGN GLPRTVNSRIA TAGADYERLSSQQAFKRT
Sbjct: 61  HSGPNGDTRASNHHIVLTNDTNYLTENGNAGLPRTVNSRIAATAGADYERLSSQQAFKRT 120

Query: 121 LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRPSSTTGRFYGREIFFRGNGDDTI 180
           LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGR  S +GRFYGRE FFRGNGDDTI
Sbjct: 121 LPYTSQSYAPLTKSNNLVDNVGSSQSRDAPISYDSGRSGSISGRFYGREAFFRGNGDDTI 180

Query: 181 SSENRDYRILPASWAPGKPIPSQYPGEHPHRPGYGEEMVAGGDERLIYQAALE 234
           SSENRDYRILP  WAPGKPIP QYPGEHPHRPGYGEEMVAGGDERLIYQAALE
Sbjct: 181 SSENRDYRILP-GWAPGKPIPPQYPGEHPHRPGYGEEMVAGGDERLIYQAALE 232

[Close]
BLAST of CsaUNG008270 vs. NCBI nr
Match: gi|743861839|ref|XP_011031224.1| (PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X1 [Populus euphratica])

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 112/272 (41.18%), Postives = 145/272 (53.31%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVAL---NIGESSGSRKLPYWAS--------TDY 60
           M+  + IEISSSDSD +       DD+V +   N  +S+ +R LP WA+        T Y
Sbjct: 1   MAAISPIEISSSDSDFNFT----DDDEVEISPVNARDSANTRTLPDWATAHPTTSRYTGY 60

Query: 61  -------SP----------GQSNVNN----SLHSG-SNGDT-RASNHHIVLTDDTNYLTE 120
                  SP            SNVN+     +H   +NG + R ++  I   D + +   
Sbjct: 61  DGQTQNASPLKRPYASNGSSSSNVNDLSWMKIHGQPTNGASIRDTSWPIARGDGSQHFIG 120

Query: 121 NGNTGLPRTVNSRIATTAGADYERLSSQQAFKRTLPYTSQSYAPLTKSNNLVDNVGSSQS 180
            GN G PRTVNS+IA  +GADYE+LSSQQA KRTLP +     P  K+NN V+N  SS S
Sbjct: 121 TGNVGQPRTVNSQIANVSGADYEKLSSQQALKRTLPSSLHPSEPSNKANNTVENASSSGS 180

Query: 181 RDA-PISYDSGRPSSTTGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIPSQYP 234
           RD    +Y    PS T  R Y R+I+ + N DD +  EN   RI P S+  GKP  +Q+P
Sbjct: 181 RDIYGNAYHLAGPSVTNSRGYTRDIYSKRNNDDIMMYENNGSRIPPPSFMHGKP-SAQFP 240

[Close]
BLAST of CsaUNG008270 vs. NCBI nr
Match: gi|1009138721|ref|XP_015886736.1| (PREDICTED: helicase-like transcription factor CHR28 [Ziziphus jujuba])

HSP 1 Score: 147.1 bits (370), Expect = 3.9e-32
Identity = 107/258 (41.47%), Postives = 139/258 (53.88%), Query Frame = 1 

Query: 1   MSVTNLIEISSSDSDVDLEYISDSDDDVALNIGESSGSRKLPYWASTDYSPGQS------ 60
           M V + IEI SSDSDV++E   D       NIG S+  R LP+WAS   +  +S      
Sbjct: 61  MVVNDHIEIISSDSDVEIEDARD-------NIG-SANHRTLPFWASVPETSSRSGGYAGR 120

Query: 61  ---------NVNNSL------HSGSNGDTRASNHHIVLTDDTNYLTENGNTGLPRTVNSR 120
                    N+N         H G       S+ HI  TD++ Y   NGN   P+TVNSR
Sbjct: 121 SYAYNGRTVNINGHTDGKLQNHFGPIDHVGPSSRHISRTDNSKY---NGNVYQPQTVNSR 180

Query: 121 IATTAGADYERLSSQQAFKRTLPYTSQSYAPLTKSNNLVDNVGSSQSRDA-PISYDSGRP 180
           IA ++  DYE++SSQQA KRTLP T    A  +KS+  VDN+  S + D    S++S  P
Sbjct: 181 IANSSETDYEKISSQQALKRTLPLTIAPSATSSKSHTSVDNIRRSLNWDTYGSSHNSAGP 240

Query: 181 SSTTGRFYGREIFFRGNGDDTISSENRDYRILPASWAPGKPIP-SQYP--GEHPHRPGYG 234
           SS +G+ Y R+   R N ++ I  EN   RILP S   GK IP +Q+P   +  +R G  
Sbjct: 241 SSISGKSYIRDHSSRVNDNEVIKYENNMSRILPPSLVHGKSIPAAQFPTSSDPAYRSGIT 300

The following BLAST results are available for this feature:
BLAST of CsaUNG008270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CHR28_ARATH9.3e-1031.88Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana GN=CHR28 PE=1 S... [more]
CHR27_ARATH1.1e-0732.69Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana GN=CHR27 PE=1 S... [more]
BLAST of CsaUNG008270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061E321_THECC3.5e-3241.18SNF2 domain-containing protein / helicase domain-containing protein / zinc finge... [more]
A0A061E9R6_THECC3.5e-3241.18SNF2 domain-containing protein / helicase domain-containing protein / zinc finge... [more]
A0A061E3U9_THECC3.5e-3241.18SNF2 domain-containing protein / helicase domain-containing protein / zinc finge... [more]
A0A061E243_THECC4.6e-3240.98SNF2 domain-containing protein / helicase domain-containing protein / zinc finge... [more]
A0A067KZQ7_JATCU1.3e-3140.71Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24472 PE=4 SV=1[more]
BLAST of CsaUNG008270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G50410.15.2e-1131.88 SNF2 domain-containing protein / helicase domain-containing protein ... [more]
AT3G20010.16.4e-0932.69 SNF2 domain-containing protein / helicase domain-containing protein ... [more]
BLAST of CsaUNG008270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730732|ref|XP_011659849.1|8.1e-131100.00PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator ... [more]
gi|778730725|ref|XP_011659847.1|8.1e-131100.00PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator ... [more]
gi|659072348|ref|XP_008465259.1|6.9e-12294.42PREDICTED: transcription termination factor 2 [Cucumis melo][more]
gi|743861839|ref|XP_011031224.1|2.3e-3241.18PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X1 [Populus e... [more]
gi|1009138721|ref|XP_015886736.1|3.9e-3241.47PREDICTED: helicase-like transcription factor CHR28 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU125835cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaUNG008270.1CsaUNG008270.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU125835CU125835transcribed_cluster