Csa6G362960 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G362960
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 16367122 .. 16368450 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGAGCCAACTAAGAAGGGGCACGTGGCAGGTTGCTGGATCATACTCTTCTTTCTTGTGGGGTAGCTCTCCTGTTCTCTCAACTGAATACGCTCACCTTCCATATTTATATTCCAATTCAATCTCCTCCAACTTCCAGCATTCAATTTCCCTCTTCCCTTGCATTTCTCCGACGGATTTCTCTCCCGGGCTCTCAGTGAGCTTTCAGGTACGTTTTCTACTTGCATTATTTCTGACTTCGATACTGATTCCTATTTCCCGCCTTTTTTCTTCCACTTATTTTGTTGTCTATTTACTTTCAAATGATTCTAATTTCTGTTTGGTTGTTAAACATCGTGCTTTCTCGTTCTCATTTACTCAGTGCTCTCAAGTTCATGCTGATCATTGACATGTCGTGTTTGTCGAACTTTTCGAAGCGAATTGTTACGTGCTATTGCAATTCGTTGAACTTTTCTTTTTCTTTTTTGTTTTGGAATAAATCTTTGTGTATATGGCCATGGTTTGACGTTCTGTGTTTTCTTTGTTCGGCATTGTTCTTAAATGCTAGCAATAATAGTTCTGAAATTAAAGCGTGTTTCAACATCTTGAATGATGCTCTCAATACGATTTTTCTGCGTAGAAGGATTAATCAATCTACTGAAAACTGAGCAAGTAGAAAAGATACCTTGTAAGAATCTCTTAAGTATATACTTAAGAGTACTGTACAGTGTAGAGATGAGAGAGAAAATCCATTAGGCCAATTACATGACTTAAAGATAGAAAGTGTAGGAAGAAGAAGTAATTAGGTTAACTAACCATATTAGTTTGAGTTACGTGACAATCTGTGCGAGCTTTTATTTCTATGATTCAAATTTGTTAGATTTTCTTTTTGAGTTTCAGCAGTGATCTAGTAGGCGTAGGCTGTTGTTGTTGTATTAATATGCTCCCGTTCTCCCTCCAGTCAGTTCAATGTTGCAACTAAGGTGGATTCAGTTTTAACAGATCGATTTATTTAATATTCTTAGATAAGAAGAAATCCATTTATTGAATGATATAGCAACATGTCCTTGGTTCACCTGTAATGCGCATAGTATTTTTGTTGAACTTAGTAATAAAAGCGATGAATCATTTAATTAATGAGTTTAGTTAGTGGTTTACTGTTCTTGGCTACATAATCGACTTTAGTAGTTGGGAGGAAAATGTTAGGGAAAGTGCATTCATGGCCACCCGATCTAATAAATTACTTGCGTTGAATCTGTGTATAATCCCAACAACATTACTCTATTTAATCTTTTGTTGCACTTTTATTTAAATCTTTGCTGGGCTGTTTTTCCAGGGAAAATAA

mRNA sequence

ATGATTGTGAGCCAACTAAGAAGGGGCACGTGGCAGGTTGCTGGATCATACTCTTCTTTCTTGTGGGGTAGCTCTCCTGTTCTCTCAACTGAATACGCTCACCTTCCATATTTATATTCCAATTCAATCTCCTCCAACTTCCAGCATTCAATTTCCCTCTTCCCTTGCATTTCTCCGACGGATTTCTCTCCCGGGCTCTCAGTGAGCTTTCAGGGAAAATAA

Coding sequence (CDS)

ATGATTGTGAGCCAACTAAGAAGGGGCACGTGGCAGGTTGCTGGATCATACTCTTCTTTCTTGTGGGGTAGCTCTCCTGTTCTCTCAACTGAATACGCTCACCTTCCATATTTATATTCCAATTCAATCTCCTCCAACTTCCAGCATTCAATTTCCCTCTTCCCTTGCATTTCTCCGACGGATTTCTCTCCCGGGCTCTCAGTGAGCTTTCAGGGAAAATAA

Protein sequence

MIVSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFPCISPTDFSPGLSVSFQGK*
Homology
[Close]
BLAST of Csa6G362960 vs. TrEMBL
Match: A0A0A0KFJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362960 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MIVSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFPCISPT 60
          MIVSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFPCISPT
Sbjct: 1  MIVSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFPCISPT 60

Query: 61 DFSPGLSVSFQGK 74
          DFSPGLSVSFQGK
Sbjct: 61 DFSPGLSVSFQGK 73

[Close]
BLAST of Csa6G362960 vs. NCBI nr
Match: gi|700192385|gb|KGN47589.1| (hypothetical protein Csa_6G362960 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MIVSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFPCISPT 60
          MIVSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFPCISPT
Sbjct: 1  MIVSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFPCISPT 60

Query: 61 DFSPGLSVSFQGK 74
          DFSPGLSVSFQGK
Sbjct: 61 DFSPGLSVSFQGK 73

The following BLAST results are available for this feature:
BLAST of Csa6G362960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFJ2_CUCSA2.0e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362960 PE=4 SV=1[more]
BLAST of Csa6G362960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192385|gb|KGN47589.1|2.8e-34100.00hypothetical protein Csa_6G362960 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU145896cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G362960.1Csa6G362960.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU145896CU145896transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G362960Cla97C08G152680Watermelon (97103) v2cuwmbB487
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G362960Cucurbita pepo (Zucchini)cpecuB119
Csa6G362960Cucurbita pepo (Zucchini)cpecuB841
Csa6G362960Bottle gourd (USVL1VR-Ls)culsiB470
Csa6G362960Cucumber (Gy14) v2cgybcuB281
Csa6G362960Melon (DHL92) v3.6.1cumedB447
Csa6G362960Silver-seed gourdcarcuB0158
Csa6G362960Wax gourdcuwgoB587
Csa6G362960Cucumber (Gy14) v1cgycuB041
Csa6G362960Cucurbita maxima (Rimu)cmacuB195
Csa6G362960Cucurbita maxima (Rimu)cmacuB805
Csa6G362960Cucurbita moschata (Rifu)cmocuB179
Csa6G362960Cucurbita moschata (Rifu)cmocuB796
Csa6G362960Melon (DHL92) v3.5.1cumeB466
Csa6G362960Watermelon (Charleston Gray)cuwcgB496
Csa6G362960Watermelon (97103) v1cuwmB456