Csa4G645310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G645310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 21780525 .. 21780938 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATTGTTTTTGATAATCAAGGTATTTATAATAATAATAATAATAACAACCAATCGCCTTTCTTGCCCGAATTATCACCGGCGCTCAATTCACCGCCACCACCGCCATACGCTAGTTATCAACCGCTTCAATTCCCTTCAAATTCGTTCAGCCACACCGCCGGCGTTATTGATGATCTGAGGAGAACCGACAGTGTACTCCGGTTTGGAATGGAGGGGGCTTCGAGTCAGCCAGTAACGAGCTACCACGTAGGTGAGTTGGAGAAGGTTGTTTACAGCAATACTCCATCGTTTGACGATGGGCTGCAGTTTTCATGTGATAACAATGGGTTGAATTTGATGAACGATTTGGATTGGGGGGAAATGAGTTCTTTGATTTCTGCTCCTTTATATCCTTCGATGATAATTTGA

mRNA sequence

ATGGCTATTGTTTTTGATAATCAAGGTATTTATAATAATAATAATAATAACAACCAATCGCCTTTCTTGCCCGAATTATCACCGGCGCTCAATTCACCGCCACCACCGCCATACGCTAGTTATCAACCGCTTCAATTCCCTTCAAATTCGTTCAGCCACACCGCCGGCGTTATTGATGATCTGAGGAGAACCGACAGTGTACTCCGGTTTGGAATGGAGGGGGCTTCGAGTCAGCCAGTAACGAGCTACCACGTAGGTGAGTTGGAGAAGGTTGTTTACAGCAATACTCCATCGTTTGACGATGGGCTGCAGTTTTCATGTGATAACAATGGGTTGAATTTGATGAACGATTTGGATTGGGGGGAAATGAGTTCTTTGATTTCTGCTCCTTTATATCCTTCGATGATAATTTGA

Coding sequence (CDS)

ATGGCTATTGTTTTTGATAATCAAGGTATTTATAATAATAATAATAATAACAACCAATCGCCTTTCTTGCCCGAATTATCACCGGCGCTCAATTCACCGCCACCACCGCCATACGCTAGTTATCAACCGCTTCAATTCCCTTCAAATTCGTTCAGCCACACCGCCGGCGTTATTGATGATCTGAGGAGAACCGACAGTGTACTCCGGTTTGGAATGGAGGGGGCTTCGAGTCAGCCAGTAACGAGCTACCACGTAGGTGAGTTGGAGAAGGTTGTTTACAGCAATACTCCATCGTTTGACGATGGGCTGCAGTTTTCATGTGATAACAATGGGTTGAATTTGATGAACGATTTGGATTGGGGGGAAATGAGTTCTTTGATTTCTGCTCCTTTATATCCTTCGATGATAATTTGA

Protein sequence

MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDDLRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDWGEMSSLISAPLYPSMII*
Homology
[Close]
BLAST of Csa4G645310 vs. TrEMBL
Match: A0A0A0L009_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645310 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.8e-74
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD 60
           MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD
Sbjct: 1   MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD 60

Query: 61  LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW 120
           LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW
Sbjct: 61  LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW 120

Query: 121 GEMSSLISAPLYPSMII 138
           GEMSSLISAPLYPSMII
Sbjct: 121 GEMSSLISAPLYPSMII 137

[Close]
BLAST of Csa4G645310 vs. NCBI nr
Match: gi|700200147|gb|KGN55305.1| (hypothetical protein Csa_4G645310 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 4.0e-74
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD 60
           MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD
Sbjct: 1   MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD 60

Query: 61  LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW 120
           LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW
Sbjct: 61  LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW 120

Query: 121 GEMSSLISAPLYPSMII 138
           GEMSSLISAPLYPSMII
Sbjct: 121 GEMSSLISAPLYPSMII 137

[Close]
BLAST of Csa4G645310 vs. NCBI nr
Match: gi|449447315|ref|XP_004141414.1| (PREDICTED: transcription factor RAX1-like [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 4.0e-74
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD 60
           MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD
Sbjct: 144 MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD 203

Query: 61  LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW 120
           LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW
Sbjct: 204 LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW 263

Query: 121 GEMSSLISAPLYPSMII 138
           GEMSSLISAPLYPSMII
Sbjct: 264 GEMSSLISAPLYPSMII 280

[Close]
BLAST of Csa4G645310 vs. NCBI nr
Match: gi|659103694|ref|XP_008452689.1| (PREDICTED: transcription factor MYB3-like [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 6.2e-67
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1 

Query: 1   MAIVFDNQGIYNNNNNNNQSPFLPELSPALNSPPPPPYASYQPLQFPSNSFSHTAGVIDD 60
           MAIVFDNQGIYN NNNNNQSPFLP+LSPALNSPPPPPYA+YQPLQF SNSFS+TAGVIDD
Sbjct: 144 MAIVFDNQGIYN-NNNNNQSPFLPKLSPALNSPPPPPYANYQPLQFHSNSFSNTAGVIDD 203

Query: 61  LRRTDSVLRFGMEGASSQPVTSYHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW 120
           LRRTDSVL+FGM+GAS QPVTS HVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW
Sbjct: 204 LRRTDSVLQFGMDGASCQPVTSTHVGELEKVVYSNTPSFDDGLQFSCDNNGLNLMNDLDW 263

Query: 121 GEMSSLISAPLYPSMII 138
           GEMSSLISAPLYPSMII
Sbjct: 264 GEMSSLISAPLYPSMII 279

The following BLAST results are available for this feature:
BLAST of Csa4G645310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L009_CUCSA2.8e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645310 PE=4 SV=1[more]
BLAST of Csa4G645310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200147|gb|KGN55305.1|4.0e-74100.00hypothetical protein Csa_4G645310 [Cucumis sativus][more]
gi|449447315|ref|XP_004141414.1|4.0e-74100.00PREDICTED: transcription factor RAX1-like [Cucumis sativus][more]
gi|659103694|ref|XP_008452689.1|6.2e-6793.43PREDICTED: transcription factor MYB3-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G645310.1Csa4G645310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G645310Cla020901Watermelon (97103) v1cuwmB321
Csa4G645310MELO3C016847Melon (DHL92) v3.5.1cumeB313
Csa4G645310ClCG05G017640Watermelon (Charleston Gray)cuwcgB311
Csa4G645310Lsi04G014470Bottle gourd (USVL1VR-Ls)culsiB291
Csa4G645310MELO3C016847.2Melon (DHL92) v3.6.1cumedB298
Csa4G645310Cla97C05G098900Watermelon (97103) v2cuwmbB307
Csa4G645310Bhi09G002612Wax gourdcuwgoB419
Csa4G645310CSPI04G25090Wild cucumber (PI 183967)cpicuB181
Csa4G645310Cucsa.353120Cucumber (Gy14) v1cgycuB494
Csa4G645310CmaCh01G017630Cucurbita maxima (Rimu)cmacuB468
Csa4G645310CmaCh09G003200Cucurbita maxima (Rimu)cmacuB020
Csa4G645310CmoCh09G003180Cucurbita moschata (Rifu)cmocuB011
Csa4G645310CmoCh01G018180Cucurbita moschata (Rifu)cmocuB461
Csa4G645310Cp4.1LG06g02410Cucurbita pepo (Zucchini)cpecuB782
Csa4G645310Cp4.1LG02g06230Cucurbita pepo (Zucchini)cpecuB564
Csa4G645310CsGy4G023390Cucumber (Gy14) v2cgybcuB166
Csa4G645310Carg21752Silver-seed gourdcarcuB0347
Csa4G645310Carg10667Silver-seed gourdcarcuB0789
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G645310Cucurbita maxima (Rimu)cmacuB185
Csa4G645310Cucurbita maxima (Rimu)cmacuB473
Csa4G645310Cucurbita maxima (Rimu)cmacuB671
Csa4G645310Cucurbita maxima (Rimu)cmacuB801
Csa4G645310Cucurbita maxima (Rimu)cmacuB869
Csa4G645310Cucurbita moschata (Rifu)cmocuB169
Csa4G645310Cucurbita moschata (Rifu)cmocuB661
Csa4G645310Cucurbita moschata (Rifu)cmocuB792
Csa4G645310Cucurbita moschata (Rifu)cmocuB856
Csa4G645310Melon (DHL92) v3.5.1cumeB290
Csa4G645310Melon (DHL92) v3.5.1cumeB327
Csa4G645310Watermelon (Charleston Gray)cuwcgB285
Csa4G645310Watermelon (Charleston Gray)cuwcgB332
Csa4G645310Watermelon (97103) v1cuwmB298
Csa4G645310Watermelon (97103) v1cuwmB328
Csa4G645310Cucurbita pepo (Zucchini)cpecuB116
Csa4G645310Cucurbita pepo (Zucchini)cpecuB491
Csa4G645310Cucurbita pepo (Zucchini)cpecuB831
Csa4G645310Bottle gourd (USVL1VR-Ls)culsiB262
Csa4G645310Bottle gourd (USVL1VR-Ls)culsiB317
Csa4G645310Cucumber (Gy14) v2cgybcuB073
Csa4G645310Cucumber (Gy14) v2cgybcuB269
Csa4G645310Melon (DHL92) v3.6.1cumedB275
Csa4G645310Melon (DHL92) v3.6.1cumedB315
Csa4G645310Silver-seed gourdcarcuB0002
Csa4G645310Silver-seed gourdcarcuB0204
Csa4G645310Silver-seed gourdcarcuB0440
Csa4G645310Silver-seed gourdcarcuB0486
Csa4G645310Watermelon (97103) v2cuwmbB265
Csa4G645310Watermelon (97103) v2cuwmbB326
Csa4G645310Wax gourdcuwgoB385
Csa4G645310Wax gourdcuwgoB395
Csa4G645310Cucumber (Chinese Long) v2cucuB062
Csa4G645310Cucumber (Chinese Long) v2cucuB143
Csa4G645310Cucumber (Gy14) v1cgycuB120
Csa4G645310Cucumber (Gy14) v1cgycuB550