Csa2G245450 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G245450
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 11834423 .. 11834846 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGTGAAGGGCTCAGAAAACTGAAAGAGATGGATTACCAAGTGAGGAGGAGAATCGGGGGAGATCAAAAGCGTCAGCAATTTACTCTTTACGAAGAAGGTTGGAACAAAATTTCATTTCTAAAACTAAGGTGAAAAATCAAATTTATAGCTTCAAAATTCTTTCGTTTCCATTGCATCCAACCTTAAATTCTATACATTCTTGCCCGTCTTTAATCCATTTTTTCGAAATTCATGACCAGCGCGTTGGAAACGGTATGCAGAAAGAAATATAGAGATGGAAGAGAGCTCACCGGCACAAGACTACGGAGGCTGGATGAATGTTGGACGGAGGTGCAGCAGCGGAGCGGCGGCGACGTGCGTGGGCGGCGCTGTGCCTAGGAGAGCCGAGACAGTGAGAGATGTCGAGAGAGAGAACTGA

mRNA sequence

ATGAAGAGTGAAGGGCTCAGAAAACTGAAAGAGATGGATTACCAAGTGAGGAGGAGAATCGGGGGAGATCAAAAGCGTCAGCAATTTACTCTTTACGAAGAAGCGCGTTGGAAACGGTATGCAGAAAGAAATATAGAGATGGAAGAGAGCTCACCGGCACAAGACTACGGAGGCTGGATGAATGTTGGACGGAGGTGCAGCAGCGGAGCGGCGGCGACGTGCGTGGGCGGCGCTGTGCCTAGGAGAGCCGAGACAGTGAGAGATGTCGAGAGAGAGAACTGA

Coding sequence (CDS)

ATGAAGAGTGAAGGGCTCAGAAAACTGAAAGAGATGGATTACCAAGTGAGGAGGAGAATCGGGGGAGATCAAAAGCGTCAGCAATTTACTCTTTACGAAGAAGCGCGTTGGAAACGGTATGCAGAAAGAAATATAGAGATGGAAGAGAGCTCACCGGCACAAGACTACGGAGGCTGGATGAATGTTGGACGGAGGTGCAGCAGCGGAGCGGCGGCGACGTGCGTGGGCGGCGCTGTGCCTAGGAGAGCCGAGACAGTGAGAGATGTCGAGAGAGAGAACTGA

Protein sequence

MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWMNVGRRCSSGAAATCVGGAVPRRAETVRDVEREN*
Homology
[Close]
BLAST of Csa2G245450 vs. TrEMBL
Match: A0A0A0LP56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245450 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWM 60
          MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWM
Sbjct: 1  MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWM 60

Query: 61 NVGRRCSSGAAATCVGGAVPRRAETVRDVEREN 94
          NVGRRCSSGAAATCVGGAVPRRAETVRDVEREN
Sbjct: 61 NVGRRCSSGAAATCVGGAVPRRAETVRDVEREN 93

[Close]
BLAST of Csa2G245450 vs. NCBI nr
Match: gi|700206662|gb|KGN61781.1| (hypothetical protein Csa_2G245450 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWM 60
          MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWM
Sbjct: 1  MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWM 60

Query: 61 NVGRRCSSGAAATCVGGAVPRRAETVRDVEREN 94
          NVGRRCSSGAAATCVGGAVPRRAETVRDVEREN
Sbjct: 61 NVGRRCSSGAAATCVGGAVPRRAETVRDVEREN 93

The following BLAST results are available for this feature:
BLAST of Csa2G245450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP56_CUCSA1.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245450 PE=4 SV=1[more]
BLAST of Csa2G245450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206662|gb|KGN61781.1|1.8e-46100.00hypothetical protein Csa_2G245450 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009631 cold acclimation
biological_process GO:0010150 leaf senescence
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048364 root development
cellular_component GO:0005575 cellular_component
cellular_component GO:0016592 mediator complex
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099438cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G245450.1Csa2G245450.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099438CU099438transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G245450MELO3C034629.2Melon (DHL92) v3.6.1cumedB086
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G245450Cucurbita pepo (Zucchini)cpecuB232
Csa2G245450Cucurbita pepo (Zucchini)cpecuB267
Csa2G245450Cucurbita pepo (Zucchini)cpecuB704
Csa2G245450Bottle gourd (USVL1VR-Ls)culsiB093
Csa2G245450Bottle gourd (USVL1VR-Ls)culsiB102
Csa2G245450Cucumber (Gy14) v2cgybcuB056
Csa2G245450Cucumber (Gy14) v2cgybcuB300
Csa2G245450Melon (DHL92) v3.6.1cumedB096
Csa2G245450Silver-seed gourdcarcuB0812
Csa2G245450Silver-seed gourdcarcuB0906
Csa2G245450Watermelon (97103) v2cuwmbB110
Csa2G245450Watermelon (97103) v2cuwmbB123
Csa2G245450Wax gourdcuwgoB147
Csa2G245450Wax gourdcuwgoB182
Csa2G245450Cucumber (Chinese Long) v2cucuB081
Csa2G245450Cucumber (Gy14) v1cgycuB133
Csa2G245450Cucumber (Gy14) v1cgycuB343
Csa2G245450Cucurbita maxima (Rimu)cmacuB507
Csa2G245450Cucurbita maxima (Rimu)cmacuB542
Csa2G245450Cucurbita maxima (Rimu)cmacuB588
Csa2G245450Cucurbita moschata (Rifu)cmocuB496
Csa2G245450Cucurbita moschata (Rifu)cmocuB531
Csa2G245450Cucurbita moschata (Rifu)cmocuB577
Csa2G245450Melon (DHL92) v3.5.1cumeB096
Csa2G245450Melon (DHL92) v3.5.1cumeB102
Csa2G245450Watermelon (Charleston Gray)cuwcgB091
Csa2G245450Watermelon (Charleston Gray)cuwcgB104
Csa2G245450Watermelon (Charleston Gray)cuwcgB127
Csa2G245450Watermelon (97103) v1cuwmB101
Csa2G245450Watermelon (97103) v1cuwmB149
Csa2G245450Watermelon (97103) v1cuwmB155