Csa1G573640 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G573640
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRING finger protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
LocationChr1 : 21438546 .. 21439190 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTTCCTACTTTTCATCAAATCGAGTTTCGTGTTCAGCATGTCGGGCCTTCCAATCATCGATTTCATCAAGTTTTGGAAATTCAAAGACGTATTAGCCACTCTCTCATGTTCAACTTTCCTCCCCAAATCATCCATCAAACGTTGCCGATTCTACTTGACTATGATAATAATTTTTTTCCTCTCCATTTCAACTTTTTCCATAGCTACGGTGAACCAAGTTCTTTCACCTTCTACGTAGCCCAATTGTTTTCCTCTCTCAACATTAACTCCATTGCTTCCGAAGCTATGGCTAGGAATATTTTCCTAATTGCCAACCAAGTCGCTAATGAAAACTCAAATGCGAGCTTTCACATTGCCGTCATCATCGACTTCATCAACTTCACCTGGATGTGTCCGTTATCTTTTTCGACAAGACAATTGACGGGAAACGAGGTGAGCATGGTGGAACAGAAAAAGATTGGGAATGATTTGGGTGATTGTAGTATTTGTTTGGATGAATTATCCCCTAGTAATAGAGAGGTAGTGTTAAAGATATCATGTGGACATGTGTATCACGAGTTATGTATTTTGAGGTGGTTGGATAACAGTGATTCTTGCCCCTTATGTAGAAGGTCAGTCCTTTTCCATTTTGAGAACTAA

mRNA sequence

ATGGCTTTTCCTACTTTTCATCAAATCGAGTTTCGTGTTCAGCATGTCGGGCCTTCCAATCATCGATTTCATCAAGTTTTGGAAATTCAAAGACGTATTAGCCACTCTCTCATGTTCAACTTTCCTCCCCAAATCATCCATCAAACGTTGCCGATTCTACTTGACTATGATAATAATTTTTTTCCTCTCCATTTCAACTTTTTCCATAGCTACGGTGAACCAAGTTCTTTCACCTTCTACGTAGCCCAATTGTTTTCCTCTCTCAACATTAACTCCATTGCTTCCGAAGCTATGGCTAGGAATATTTTCCTAATTGCCAACCAAGTCGCTAATGAAAACTCAAATGCGAGCTTTCACATTGCCGTCATCATCGACTTCATCAACTTCACCTGGATGTGTCCGTTATCTTTTTCGACAAGACAATTGACGGGAAACGAGGTGAGCATGGTGGAACAGAAAAAGATTGGGAATGATTTGGGTGATTGTAGTATTTGTTTGGATGAATTATCCCCTAGTAATAGAGAGGTAGTGTTAAAGATATCATGTGGACATGTGTATCACGAGTTATGTATTTTGAGGTGGTTGGATAACAGTGATTCTTGCCCCTTATGTAGAAGGTCAGTCCTTTTCCATTTTGAGAACTAA

Coding sequence (CDS)

ATGGCTTTTCCTACTTTTCATCAAATCGAGTTTCGTGTTCAGCATGTCGGGCCTTCCAATCATCGATTTCATCAAGTTTTGGAAATTCAAAGACGTATTAGCCACTCTCTCATGTTCAACTTTCCTCCCCAAATCATCCATCAAACGTTGCCGATTCTACTTGACTATGATAATAATTTTTTTCCTCTCCATTTCAACTTTTTCCATAGCTACGGTGAACCAAGTTCTTTCACCTTCTACGTAGCCCAATTGTTTTCCTCTCTCAACATTAACTCCATTGCTTCCGAAGCTATGGCTAGGAATATTTTCCTAATTGCCAACCAAGTCGCTAATGAAAACTCAAATGCGAGCTTTCACATTGCCGTCATCATCGACTTCATCAACTTCACCTGGATGTGTCCGTTATCTTTTTCGACAAGACAATTGACGGGAAACGAGGTGAGCATGGTGGAACAGAAAAAGATTGGGAATGATTTGGGTGATTGTAGTATTTGTTTGGATGAATTATCCCCTAGTAATAGAGAGGTAGTGTTAAAGATATCATGTGGACATGTGTATCACGAGTTATGTATTTTGAGGTGGTTGGATAACAGTGATTCTTGCCCCTTATGTAGAAGGTCAGTCCTTTTCCATTTTGAGAACTAA

Protein sequence

MAFPTFHQIEFRVQHVGPSNHRFHQVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNFFPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHIAVIIDFINFTWMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKISCGHVYHELCILRWLDNSDSCPLCRRSVLFHFEN*
Homology
[Close]
BLAST of Csa1G573640 vs. Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-08
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1 

Query: 140 RQLTGNEVSMVEQKKIGND--LGDCSICLDELSPSNREVVLKISCGHVYHELCILRWLDN 199
           R LT  ++  +  +  G +  L  CS+C+ E +  N+  + K+ C H YH  CI RWL  
Sbjct: 561 RGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNK--LRKLPCSHEYHVHCIDRWLSE 620

Query: 200 SDSCPLCRRSVL 210
           + +CP+CRR+VL
Sbjct: 621 NSTCPICRRAVL 630

[Close]
BLAST of Csa1G573640 vs. Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-08
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1 

Query: 140 RQLTGNEVSMVEQKKIGND--LGDCSICLDELSPSNREVVLKISCGHVYHELCILRWLDN 199
           R LT  ++  +  +  G +  L  CS+C+ E +  N+  + K+ C H YH  CI RWL  
Sbjct: 522 RGLTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNK--LRKLPCSHEYHVHCIDRWLSE 581

Query: 200 SDSCPLCRRSVL 210
           + +CP+CRR+VL
Sbjct: 582 NSTCPICRRAVL 591

[Close]
BLAST of Csa1G573640 vs. Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-08
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1 

Query: 140 RQLTGNEVSMVEQKKIGND--LGDCSICLDELSPSNREVVLKISCGHVYHELCILRWLDN 199
           R LT  ++  +  +  G +  L  CS+C+ E +  N+  + K+ C H YH  CI RWL  
Sbjct: 546 RGLTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNK--LRKLPCSHEYHVHCIDRWLSE 605

Query: 200 SDSCPLCRRSVL 210
           + +CP+CRR+VL
Sbjct: 606 NSTCPICRRAVL 615

[Close]
BLAST of Csa1G573640 vs. Swiss-Prot
Match: RF12A_XENLA (E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.8e-08
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1 

Query: 140 RQLTGNEVSMVEQKKIGND--LGDCSICLDELSPSNREVVLKISCGHVYHELCILRWLDN 199
           R LT  ++  +  +  G +  L  CS+C+ E +  N+  + K+ C H YH  CI RWL  
Sbjct: 544 RGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNK--LRKLPCSHEYHIHCIDRWLSE 603

Query: 200 SDSCPLCRRSVL 210
           + +CP+CRR+VL
Sbjct: 604 NSTCPICRRAVL 613

[Close]
BLAST of Csa1G573640 vs. Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1 

Query: 140 RQLTGNEVSMVEQKKIGND--LGDCSICLDELSPSNREVVLKISCGHVYHELCILRWLDN 199
           R LT  ++  +  +  G +  L  CS+C+ E +  N+  + K+ C H YH  CI RWL  
Sbjct: 679 RGLTKEQIDNLSTRNYGENDALKTCSVCITEYTEGNK--LRKLPCSHEYHIHCIDRWLSE 738

Query: 200 SDSCPLCRRSVL 210
           + +CP+CRR+VL
Sbjct: 739 NSTCPICRRAVL 748

[Close]
BLAST of Csa1G573640 vs. TrEMBL
Match: A0A0A0LW68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573640 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 2.5e-122
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MAFPTFHQIEFRVQHVGPSNHRFHQVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNF 60
           MAFPTFHQIEFRVQHVGPSNHRFHQVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNF
Sbjct: 1   MAFPTFHQIEFRVQHVGPSNHRFHQVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNF 60

Query: 61  FPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHI 120
           FPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHI
Sbjct: 61  FPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHI 120

Query: 121 AVIIDFINFTWMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKI 180
           AVIIDFINFTWMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKI
Sbjct: 121 AVIIDFINFTWMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKI 180

Query: 181 SCGHVYHELCILRWLDNSDSCPLCRRSVLFHFEN 215
           SCGHVYHELCILRWLDNSDSCPLCRRSVLFHFEN
Sbjct: 181 SCGHVYHELCILRWLDNSDSCPLCRRSVLFHFEN 214

[Close]
BLAST of Csa1G573640 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.8e-26
Identity = 83/225 (36.89%), Postives = 118/225 (52.44%), Query Frame = 1 

Query: 1   MAFPTFHQIEFRVQHVGPSNHRFHQV--LEIQRRISHSLMFNFPPQIIHQTLPILLDYDN 60
           M+F   + I++R+   G   +   QV    IQ+ IS S +   P +++HQT  I   Y N
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRI--PYHN 60

Query: 61  NFFPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASF 120
             F L      S  +  S  FY+ Q+ SSLNI   AS+ MAR I     Q+ + NS  +F
Sbjct: 61  ALFYL------SLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HIAVIIDFINFTWMCPL----SFSTRQLTGNEVSMVEQKKIG-------------NDLGD 180
           HI   +DFI   W+  +    + +   +  +E     ++ +G              +LGD
Sbjct: 121 HILAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGD 180

Query: 181 CSICLDELSPSNREVVLKISCGHVYHELCILRWLDNSDSCPLCRR 207
           CSICLDELS   REV ++I CGHVYHE CI +WL+N +SCPLCR+
Sbjct: 181 CSICLDELSCEKREV-MRIPCGHVYHESCIFKWLENHNSCPLCRK 216

[Close]
BLAST of Csa1G573640 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.8e-26
Identity = 83/225 (36.89%), Postives = 118/225 (52.44%), Query Frame = 1 

Query: 1   MAFPTFHQIEFRVQHVGPSNHRFHQV--LEIQRRISHSLMFNFPPQIIHQTLPILLDYDN 60
           M+F   + I++R+   G   +   QV    IQ+ IS S +   P +++HQT  I   Y N
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRI--PYHN 60

Query: 61  NFFPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASF 120
             F L      S  +  S  FY+ Q+ SSLNI   AS+ MAR I     Q+ + NS  +F
Sbjct: 61  ALFYL------SLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HIAVIIDFINFTWMCPL----SFSTRQLTGNEVSMVEQKKIG-------------NDLGD 180
           HI   +DFI   W+  +    + +   +  +E     ++ +G              +LGD
Sbjct: 121 HILAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGD 180

Query: 181 CSICLDELSPSNREVVLKISCGHVYHELCILRWLDNSDSCPLCRR 207
           CSICLDELS   REV ++I CGHVYHE CI +WL+N +SCPLCR+
Sbjct: 181 CSICLDELSCEKREV-MRIPCGHVYHESCIFKWLENHNSCPLCRK 216

[Close]
BLAST of Csa1G573640 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 67/191 (35.08%), Postives = 100/191 (52.36%), Query Frame = 1 

Query: 25  QVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNFFPLHFNFFHSYGEPSSFTFYVAQL 84
           Q+  ++R IS S   +F  +I+++T P    ++N  F L     H    P    F++ Q 
Sbjct: 26  QLSYLERAISVS---SFSQRILYETQPT--PFNNALFYLSV---HQLQHP---LFHIRQF 85

Query: 85  FSSLNINSIASEAMARNIFLIANQVANENS--NASFHIAVIIDFINFTWM--CPLSFSTR 144
             SLNI     E +AR I      + N N+  N++F++   +D +    +   P +   R
Sbjct: 86  LYSLNIRR---ETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWR 145

Query: 145 QLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKISCGHVYHELCILRWLDNSDS 204
              G  V  + + K   + GDCS+CLDEL    REV+ +I CGHVYHE CI +WL++S+S
Sbjct: 146 ---GVAVERLSKLKSEEEKGDCSVCLDELDCEKREVI-RIPCGHVYHESCIFKWLNSSNS 198

Query: 205 CPLCRRSVLFH 212
           CPLCR S   H
Sbjct: 206 CPLCRSSFPLH 198

[Close]
BLAST of Csa1G573640 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 61/205 (29.76%), Postives = 99/205 (48.29%), Query Frame = 1 

Query: 29  IQRRISH--SLMFNFPPQIIHQTLPILLDYDNNFFPLHFNFFHSYGEPSSFTFYVAQLFS 88
           +Q R+ H   L+     QI+ QT P L+   +   P  F+ +     P    F++ +  S
Sbjct: 31  VQLRLRHFGQLVHTPSQQILQQTSPTLIS--DTLIP--FSLWELEDPPFISYFFLFRFLS 90

Query: 89  SLNINSIASEAMARNIFLIANQV---ANENSNASFHIAVIIDFINFTW--MCPLSFSTRQ 148
           S +I++   +A+  NI   A Q+   A+ N N +FHI   +D +   W  + P   +   
Sbjct: 91  SYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIVYTHWVDLDPAEDAPAV 150

Query: 149 LTGNEVSMVE------------QKKIGNDLGDCSICLDEL------SPSNREVVLKISCG 208
             G   S++E            ++K G+D   CS+C ++L           + V +I CG
Sbjct: 151 RKGASTSVIERVMKEKYDGNGGEEKEGDD--QCSVCYEQLYGKRENENEKEKEVSRIPCG 210

[Close]
BLAST of Csa1G573640 vs. TAIR10
Match: AT5G37270.1 (AT5G37270.1 RING/U-box superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 1 

Query: 151 EQKKIGNDLGD-----CSICLDELSPSNRE-VVLKISCGHVYHELCILRWLDNSDSCPLC 207
           EQ     DLGD     CSICL++ S S+ + ++L   C H++H+ CI  WL    SCPLC
Sbjct: 137 EQTMEFTDLGDEEETTCSICLEDFSESHDDNIILLPDCFHLFHQSCIFEWLKRQRSCPLC 196

[Close]
BLAST of Csa1G573640 vs. TAIR10
Match: AT4G12140.1 (AT4G12140.1 RING/U-box superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 23/70 (32.86%), Postives = 35/70 (50.00%), Query Frame = 1 

Query: 136 SFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKISCGHVYHELCILRWL 195
           S  +R +    +   E K    +   CSICL  L  S++    ++SC HV+H  C++ WL
Sbjct: 127 SKESRMVRLGSMKAEELKSFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSCLVEWL 186

Query: 196 DNSDSCPLCR 206
              ++CP+CR
Sbjct: 187 KRKNTCPMCR 196

[Close]
BLAST of Csa1G573640 vs. TAIR10
Match: AT5G37250.1 (AT5G37250.1 RING/U-box superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 1 

Query: 151 EQKKIGNDLGD-----CSICLDELSPSNRE-VVLKISCGHVYHELCILRWLDNSDSCPLC 207
           EQ     DLGD     CSICL++ S S+ + ++L   C H++H+ CI  WL    SCPLC
Sbjct: 121 EQTMELTDLGDEEETTCSICLEDFSESHDDNIILLPDCFHLFHQNCIFEWLKRQRSCPLC 180

[Close]
BLAST of Csa1G573640 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-08
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 1 

Query: 138 STRQLTGNEVSMVEQKKIGNDLGDCSICLDEL--SPSNREVVLKISCGHVYHELCILRWL 197
           S R +    +   E K +  +   CSICL+ L   P  R+V  +++C HV+H  C+L WL
Sbjct: 133 SLRMVLLGRMKAEEFKSLKMETEPCSICLESLVSGPKPRDVT-RMTCSHVFHNGCLLEWL 192

Query: 198 DNSDSCPLCRRSV 209
              ++CPLCR  +
Sbjct: 193 KRKNTCPLCRTEI 204

[Close]
BLAST of Csa1G573640 vs. TAIR10
Match: AT3G30460.1 (AT3G30460.1 RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-08
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1 

Query: 136 SFSTRQLT-GNEVSMVE---QKKIGNDLGDCSICLDELSPSNREVVLKISCGHVYHELCI 195
           S  TR L  G E+ +VE   ++ +   L  C+IC +EL+ + R  + ++ C H YH+ CI
Sbjct: 67  SSCTRWLNAGEELPVVEFTAEEMMERGLVVCAICREELAANER--LSELPCRHYYHKECI 126

Query: 196 LRWLDNSDSCPLCRRSV 209
             WL N ++CPLCR +V
Sbjct: 127 SNWLSNRNTCPLCRHNV 141

[Close]
BLAST of Csa1G573640 vs. NCBI nr
Match: gi|700211049|gb|KGN66145.1| (hypothetical protein Csa_1G573640 [Cucumis sativus])

HSP 1 Score: 446.0 bits (1146), Expect = 3.6e-122
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MAFPTFHQIEFRVQHVGPSNHRFHQVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNF 60
           MAFPTFHQIEFRVQHVGPSNHRFHQVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNF
Sbjct: 1   MAFPTFHQIEFRVQHVGPSNHRFHQVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNF 60

Query: 61  FPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHI 120
           FPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHI
Sbjct: 61  FPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHI 120

Query: 121 AVIIDFINFTWMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKI 180
           AVIIDFINFTWMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKI
Sbjct: 121 AVIIDFINFTWMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKI 180

Query: 181 SCGHVYHELCILRWLDNSDSCPLCRRSVLFHFEN 215
           SCGHVYHELCILRWLDNSDSCPLCRRSVLFHFEN
Sbjct: 181 SCGHVYHELCILRWLDNSDSCPLCRRSVLFHFEN 214

[Close]
BLAST of Csa1G573640 vs. NCBI nr
Match: gi|659100547|ref|XP_008451147.1| (PREDICTED: E3 ubiquitin-protein ligase ATL59-like [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 1.5e-75
Identity = 144/215 (66.98%), Postives = 166/215 (77.21%), Query Frame = 1 

Query: 1   MAFPTFHQIEFRVQHVGPSNHRFH-QVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNN 60
           M FPTFHQ++F V+HVGPS+HRFH QVLEIQRR SHSLMF+FP Q IHQT  I +D  +N
Sbjct: 1   MDFPTFHQLKFHVKHVGPSHHRFHYQVLEIQRRFSHSLMFDFPHQTIHQTSSISIDNYDN 60

Query: 61  FFPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFH 120
           +FPL  NFFH+Y EPSSF  YV QL SSL+INS+ SE +AR I LIAN VA ENSNASFH
Sbjct: 61  YFPLPLNFFHNYYEPSSFPSYVTQLLSSLDINSVNSEVIAREIVLIANHVAKENSNASFH 120

Query: 121 IAVIIDFINFTWMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLK 180
           I V +DFI FTWM  LS  T+Q T NEV MV  K+I  DL DCSICL+E S +NR++ LK
Sbjct: 121 IVVTVDFIQFTWMHSLSLLTQQSTRNEVRMVGWKEIEKDLDDCSICLEEFSCNNRKIGLK 180

Query: 181 ISCGHVYHELCILRWLDNSDSCPLCRRSVLFHFEN 215
           I CGHVYHE CIL+WL+NS SCPLCRR +   FEN
Sbjct: 181 IPCGHVYHESCILKWLENSHSCPLCRRLIFPRFEN 215

[Close]
BLAST of Csa1G573640 vs. NCBI nr
Match: gi|449454422|ref|XP_004144954.1| (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 83/225 (36.89%), Postives = 118/225 (52.44%), Query Frame = 1 

Query: 1   MAFPTFHQIEFRVQHVGPSNHRFHQV--LEIQRRISHSLMFNFPPQIIHQTLPILLDYDN 60
           M+F   + I++R+   G   +   QV    IQ+ IS S +   P +++HQT  I   Y N
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRI--PYHN 60

Query: 61  NFFPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASF 120
             F L      S  +  S  FY+ Q+ SSLNI   AS+ MAR I     Q+ + NS  +F
Sbjct: 61  ALFYL------SLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HIAVIIDFINFTWMCPL----SFSTRQLTGNEVSMVEQKKIG-------------NDLGD 180
           HI   +DFI   W+  +    + +   +  +E     ++ +G              +LGD
Sbjct: 121 HILAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGD 180

Query: 181 CSICLDELSPSNREVVLKISCGHVYHELCILRWLDNSDSCPLCRR 207
           CSICLDELS   REV ++I CGHVYHE CI +WL+N +SCPLCR+
Sbjct: 181 CSICLDELSCEKREV-MRIPCGHVYHESCIFKWLENHNSCPLCRK 216

[Close]
BLAST of Csa1G573640 vs. NCBI nr
Match: gi|778730084|ref|XP_011659694.1| (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 83/225 (36.89%), Postives = 118/225 (52.44%), Query Frame = 1 

Query: 1   MAFPTFHQIEFRVQHVGPSNHRFHQV--LEIQRRISHSLMFNFPPQIIHQTLPILLDYDN 60
           M+F   + I++R+   G   +   QV    IQ+ IS S +   P +++HQT  I   Y N
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRI--PYHN 60

Query: 61  NFFPLHFNFFHSYGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASF 120
             F L      S  +  S  FY+ Q+ SSLNI   AS+ MAR I     Q+ + NS  +F
Sbjct: 61  ALFYL------SLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HIAVIIDFINFTWMCPL----SFSTRQLTGNEVSMVEQKKIG-------------NDLGD 180
           HI   +DFI   W+  +    + +   +  +E     ++ +G              +LGD
Sbjct: 121 HILAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGD 180

Query: 181 CSICLDELSPSNREVVLKISCGHVYHELCILRWLDNSDSCPLCRR 207
           CSICLDELS   REV ++I CGHVYHE CI +WL+N +SCPLCR+
Sbjct: 181 CSICLDELSCEKREV-MRIPCGHVYHESCIFKWLENHNSCPLCRK 216

[Close]
BLAST of Csa1G573640 vs. NCBI nr
Match: gi|778697402|ref|XP_011654314.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 67/191 (35.08%), Postives = 100/191 (52.36%), Query Frame = 1 

Query: 25  QVLEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNFFPLHFNFFHSYGEPSSFTFYVAQL 84
           Q+  ++R IS S   +F  +I+++T P    ++N  F L     H    P    F++ Q 
Sbjct: 26  QLSYLERAISVS---SFSQRILYETQPT--PFNNALFYLSV---HQLQHP---LFHIRQF 85

Query: 85  FSSLNINSIASEAMARNIFLIANQVANENS--NASFHIAVIIDFINFTWM--CPLSFSTR 144
             SLNI     E +AR I      + N N+  N++F++   +D +    +   P +   R
Sbjct: 86  LYSLNIRR---ETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRAEGWR 145

Query: 145 QLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKISCGHVYHELCILRWLDNSDS 204
              G  V  + + K   + GDCS+CLDEL    REV+ +I CGHVYHE CI +WL++S+S
Sbjct: 146 ---GVAVERLSKLKSEEEKGDCSVCLDELDCEKREVI-RIPCGHVYHESCIFKWLNSSNS 198

Query: 205 CPLCRRSVLFH 212
           CPLCR S   H
Sbjct: 206 CPLCRSSFPLH 198

The following BLAST results are available for this feature:
BLAST of Csa1G573640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNF12_XENTR5.9e-0837.50E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1[more]
RNF12_MOUSE5.9e-0837.50E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2[more]
RNF12_HUMAN5.9e-0837.50E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3[more]
RF12A_XENLA7.8e-0837.50E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a PE=1 SV=1[more]
RF12B_XENLA1.0e-0737.50E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1[more]
BLAST of Csa1G573640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW68_CUCSA2.5e-122100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573640 PE=4 SV=1[more]
A0A0A0K696_CUCSA9.8e-2636.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
A0A0A0K2W2_CUCSA9.8e-2636.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA1.1e-1635.08Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA5.1e-1429.76Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
BLAST of Csa1G573640 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G37270.11.3e-0845.16 RING/U-box superfamily protein[more]
AT4G12140.12.2e-0832.86 RING/U-box superfamily protein[more]
AT5G37250.12.2e-0845.16 RING/U-box superfamily protein[more]
AT4G05350.16.3e-0835.62 RING/U-box superfamily protein[more]
AT3G30460.16.3e-0838.96 RING/U-box superfamily protein[more]
BLAST of Csa1G573640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211049|gb|KGN66145.1|3.6e-122100.00hypothetical protein Csa_1G573640 [Cucumis sativus][more]
gi|659100547|ref|XP_008451147.1|1.5e-7566.98PREDICTED: E3 ubiquitin-protein ligase ATL59-like [Cucumis melo][more]
gi|449454422|ref|XP_004144954.1|1.4e-2536.89PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus][more]
gi|778730084|ref|XP_011659694.1|1.4e-2536.89PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus][more]
gi|778697402|ref|XP_011654314.1|1.6e-1635.08PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G573640.1Csa1G573640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 161..205
score: 1.5
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 162..204
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 162..205
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 160..208
score: 9.0
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 32..208
score: 2.5
NoneNo IPR availablePANTHERPTHR22763:SF71PROTEIN Y105C5B.11, ISOFORM Bcoord: 32..208
score: 2.5
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 150..211
score: 5.96

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G573640Cla97C03G066740Watermelon (97103) v2cuwmbB042
Csa1G573640BhiUN613G5Wax gourdcuwgoB119
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G573640Cucumber (Gy14) v1cgycuB414
Csa1G573640Melon (DHL92) v3.5.1cumeB041
Csa1G573640Watermelon (Charleston Gray)cuwcgB046
Csa1G573640Watermelon (97103) v1cuwmB020
Csa1G573640Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G573640Cucumber (Gy14) v2cgybcuB002
Csa1G573640Melon (DHL92) v3.6.1cumedB033