Csa1G573570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G573570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionVesicle-associated protein 2-2; contains IPR008962 (PapD-like)
LocationChr1 : 21393029 .. 21393676 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCACAGCAAATGGCTCCACCTGATATGAAATGCAAAGACAAGTTCTTAATCCAAAGCACAATAGTTCCCATTGAGACAAATCTTCATGAAGATTATGTAACTTCCACTTATAACTTGGTAAATGGTCTTTGTCAATAACTTTGTTGTATTAATTTACATTTTTTGTGAATTTGCATGTTCATAACTCATATCTATCTGTTCTGTATGAGCATACCTTAGGCTAGTTTAAGAGTATAAAACTTAGGGAACGTTATCAAATGAACTTTTATTGGAATTGGTTAGATTTTTTCAAGGGGCCATGATCGTATACCTATGATCATAAATTAAATTATCAAACTAATTGTGCATTCCTTCATAGGTAGTGTAAGTAACATTAATTAGTTGGGGCAGCTTTTCACAATACCATTTTTCTTTCTTGTACTGTCTTCTTCACAGTTTGAGAAAAATGGTAGCAAGAACAATATAGAAGAAAGGAGATTGAGTACAATTCTAGTTAAGGACGAATCTTCTTCCCCAACTATTGAAACATTGAATGTTGGAGTCTCAAACCAAAGTAAAGATAAGGAAATAGAAGAGTTGAAGTTAAAAATCACTCAACTTGATCAAAAACTCCACGAGGTTAGTCTTTCATACAACTCATAA

mRNA sequence

ATGCAAGCACAGCAAATGGCTCCACCTGATATGAAATGCAAAGACAAGTTCTTAATCCAAAGCACAATAGTTCCCATTGAGACAAATCTTCATGAAGATTATGTAACTTCCACTTATAACTTGTTTGAGAAAAATGGTAGCAAGAACAATATAGAAGAAAGGAGATTGAGTACAATTCTAGTTAAGGACGAATCTTCTTCCCCAACTATTGAAACATTGAATGTTGGAGTCTCAAACCAAAGTAAAGATAAGGAAATAGAAGAGTTGAAGTTAAAAATCACTCAACTTGATCAAAAACTCCACGAGGTTAGTCTTTCATACAACTCATAA

Coding sequence (CDS)

ATGCAAGCACAGCAAATGGCTCCACCTGATATGAAATGCAAAGACAAGTTCTTAATCCAAAGCACAATAGTTCCCATTGAGACAAATCTTCATGAAGATTATGTAACTTCCACTTATAACTTGTTTGAGAAAAATGGTAGCAAGAACAATATAGAAGAAAGGAGATTGAGTACAATTCTAGTTAAGGACGAATCTTCTTCCCCAACTATTGAAACATTGAATGTTGGAGTCTCAAACCAAAGTAAAGATAAGGAAATAGAAGAGTTGAAGTTAAAAATCACTCAACTTGATCAAAAACTCCACGAGGTTAGTCTTTCATACAACTCATAA

Protein sequence

MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTILVKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLSYNS*
Homology
[Close]
BLAST of Csa1G573570 vs. Swiss-Prot
Match: VAP22_ARATH (Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.3e-06
Identity = 36/74 (48.65%), Postives = 41/74 (55.41%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           MQA +  PPDM CKDKFLIQST V  ET   ED    T ++F K   K +IEE +L   L
Sbjct: 70  MQAFKEPPPDMVCKDKFLIQSTAVSAETT-DEDI---TASMFSKAEGK-HIEENKLRVTL 129

Query: 61  VKDESSSPTIETLN 75
           V   S SP +  +N
Sbjct: 130 V-PPSDSPELSPIN 137

[Close]
BLAST of Csa1G573570 vs. TrEMBL
Match: A0A0A0LWK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573570 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL
Sbjct: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60

Query: 61  VKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLSYNS 110
           VKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLSYNS
Sbjct: 61  VKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLSYNS 109

[Close]
BLAST of Csa1G573570 vs. TrEMBL
Match: A0A0B2P2A7_GLYSO (Vesicle-associated protein 2-2 OS=Glycine soja GN=glysoja_004421 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 1  MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
          MQAQ+MAPPDM CKDKFLIQST+VP+ T   ED +TS  ++F K+  K  IEE++L  +L
Sbjct: 19 MQAQRMAPPDMLCKDKFLIQSTVVPVGTT--EDDITS--DMFAKDSGK-FIEEKKLRVVL 78

Query: 61 VKDESS 67
          +   SS
Sbjct: 79 ISPPSS 79

[Close]
BLAST of Csa1G573570 vs. TrEMBL
Match: I1MRD8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G022400 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 1  MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
          MQAQ+MAPPDM CKDKFLIQST+VP+ T   ED +TS  ++F K+  K  IEE++L  +L
Sbjct: 21 MQAQRMAPPDMLCKDKFLIQSTVVPVGTT--EDDITS--DMFAKDSGK-FIEEKKLRVVL 80

Query: 61 VKDESS 67
          +   SS
Sbjct: 81 ISPPSS 81

[Close]
BLAST of Csa1G573570 vs. TrEMBL
Match: C6THF6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G022400 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           MQAQ+MAPPDM CKDKFLIQST+VP+ T   ED +TS  ++F K+  K  IEE++L  +L
Sbjct: 70  MQAQRMAPPDMLCKDKFLIQSTVVPVGTT--EDDITS--DMFAKDSGK-FIEEKKLRVVL 129

Query: 61  VKDESS 67
           +   SS
Sbjct: 130 ISPPSS 130

[Close]
BLAST of Csa1G573570 vs. TrEMBL
Match: C6T767_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G252000 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           MQAQ+MAPPDM CKDKFLIQST+VP  T   ED +TS  ++F K+  K  IEE++L  +L
Sbjct: 70  MQAQRMAPPDMLCKDKFLIQSTVVPFGTT--EDDITS--DMFSKDSGK-YIEEKKLRVVL 129

Query: 61  VKDESS 67
           +   SS
Sbjct: 130 ISPPSS 130

[Close]
BLAST of Csa1G573570 vs. TAIR10
Match: AT1G08820.1 (AT1G08820.1 vamp/synaptobrevin-associated protein 27-2)

HSP 1 Score: 51.2 bits (121), Expect = 4.7e-07
Identity = 36/74 (48.65%), Postives = 41/74 (55.41%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           MQA +  PPDM CKDKFLIQST V  ET   ED    T ++F K   K +IEE +L   L
Sbjct: 70  MQAFKEPPPDMVCKDKFLIQSTAVSAETT-DEDI---TASMFSKAEGK-HIEENKLRVTL 129

Query: 61  VKDESSSPTIETLN 75
           V   S SP +  +N
Sbjct: 130 V-PPSDSPELSPIN 137

[Close]
BLAST of Csa1G573570 vs. TAIR10
Match: AT5G47180.1 (AT5G47180.1 Plant VAMP (vesicle-associated membrane protein) family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 35/109 (32.11%), Postives = 52/109 (47.71%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           +QAQ+  PPDM+CKDKFL+QSTIVP  T++ E       + F K+  K  + E +L    
Sbjct: 74  LQAQREYPPDMQCKDKFLLQSTIVPPHTDVDE----LPQDTFTKDSGK-TLTECKLKVSY 133

Query: 61  VKDESSSPTIETLNVGVSNQSKD------KEIEELKLKITQLDQKLHEV 104
           +   ++  + E+       QS +      +  EE    + Q  Q  HE+
Sbjct: 134 ITPSTTQRSSESGATNGDGQSSETISTIQRLKEERDAAVKQTQQLQHEL 177

[Close]
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|700211042|gb|KGN66138.1| (hypothetical protein Csa_1G573570 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 4.1e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL
Sbjct: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60

Query: 61  VKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLSYNS 110
           VKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLSYNS
Sbjct: 61  VKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLSYNS 109

[Close]
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|659099699|ref|XP_008450732.1| (PREDICTED: vesicle-associated protein 1-3-like [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-41
Identity = 89/106 (83.96%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           MQAQ+MAPPDMKCKDKFLIQSTIVPIE NLHED +TSTYNLFEKNG+KNNIEER+LSTIL
Sbjct: 70  MQAQKMAPPDMKCKDKFLIQSTIVPIEANLHED-MTSTYNLFEKNGNKNNIEERKLSTIL 129

Query: 61  VKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLS 107
           VK  ++S TIE L+VGVSNQSKDK+IEELKLKITQLDQKLHE  +S
Sbjct: 130 VKASAASSTIEALSVGVSNQSKDKQIEELKLKITQLDQKLHEAEIS 174

[Close]
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|694322120|ref|XP_009352199.1| (PREDICTED: vesicle-associated protein 2-2-like [Pyrus x bretschneideri])

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-08
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 1   MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
           MQAQ++APPD++CKDKFLIQ T++P  T   E  VTS   +F K GS  NIEER+L  +L
Sbjct: 72  MQAQRVAPPDLQCKDKFLIQCTVIPFGTT--EQEVTS--EMFSK-GSGRNIEERKLKVLL 131

Query: 61  VKDESSSPTIETLNVGVSNQSKDKEIEELKLK 93
           +     SP    + V ++ +SK     E  +K
Sbjct: 132 I-----SPPPSPVFVPINGESKQDPCYETSVK 153

[Close]
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|947052737|gb|KRH02190.1| (hypothetical protein GLYMA_17G022400 [Glycine max])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 1  MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
          MQAQ+MAPPDM CKDKFLIQST+VP+ T   ED +TS  ++F K+  K  IEE++L  +L
Sbjct: 21 MQAQRMAPPDMLCKDKFLIQSTVVPVGTT--EDDITS--DMFAKDSGK-FIEEKKLRVVL 80

Query: 61 VKDESS 67
          +   SS
Sbjct: 81 ISPPSS 81

[Close]
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|734319355|gb|KHN03395.1| (Vesicle-associated protein 2-2 [Glycine soja])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 1  MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTIL 60
          MQAQ+MAPPDM CKDKFLIQST+VP+ T   ED +TS  ++F K+  K  IEE++L  +L
Sbjct: 19 MQAQRMAPPDMLCKDKFLIQSTVVPVGTT--EDDITS--DMFAKDSGK-FIEEKKLRVVL 78

Query: 61 VKDESS 67
          +   SS
Sbjct: 79 ISPPSS 79

The following BLAST results are available for this feature:
BLAST of Csa1G573570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VAP22_ARATH8.3e-0648.65Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1[more]
BLAST of Csa1G573570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWK4_CUCSA2.8e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573570 PE=4 SV=1[more]
A0A0B2P2A7_GLYSO2.8e-0856.06Vesicle-associated protein 2-2 OS=Glycine soja GN=glysoja_004421 PE=4 SV=1[more]
I1MRD8_SOYBN2.8e-0856.06Uncharacterized protein OS=Glycine max GN=GLYMA_17G022400 PE=4 SV=1[more]
C6THF6_SOYBN2.8e-0856.06Uncharacterized protein OS=Glycine max GN=GLYMA_17G022400 PE=2 SV=1[more]
C6T767_SOYBN3.6e-0856.06Uncharacterized protein OS=Glycine max GN=GLYMA_07G252000 PE=2 SV=1[more]
BLAST of Csa1G573570 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08820.14.7e-0748.65 vamp/synaptobrevin-associated protein 27-2[more]
AT5G47180.11.4e-0632.11 Plant VAMP (vesicle-associated membrane protein) family protein[more]
BLAST of Csa1G573570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211042|gb|KGN66138.1|4.1e-53100.00hypothetical protein Csa_1G573570 [Cucumis sativus][more]
gi|659099699|ref|XP_008450732.1|4.7e-4183.96PREDICTED: vesicle-associated protein 1-3-like [Cucumis melo][more]
gi|694322120|ref|XP_009352199.1|3.0e-0844.57PREDICTED: vesicle-associated protein 2-2-like [Pyrus x bretschneideri][more]
gi|947052737|gb|KRH02190.1|4.0e-0856.06hypothetical protein GLYMA_17G022400 [Glycine max][more]
gi|734319355|gb|KHN03395.1|4.0e-0856.06Vesicle-associated protein 2-2 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008962PapD-like_sf
IPR016763VAP
Vocabulary: Cellular Component
TermDefinition
GO:0005789endoplasmic reticulum membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0044464 cell part
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G573570.1Csa1G573570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008962PapD-likeGENE3DG3DSA:2.60.40.360coord: 7..56
score: 6.
IPR008962PapD-likeunknownSSF49354PapD-likecoord: 2..70
score: 2.0
IPR016763Vesicle-associated membrane-protein-associated proteinPANTHERPTHR10809VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEINcoord: 1..102
score: 8.1
NoneNo IPR availableunknownCoilCoilcoord: 79..106
scor
NoneNo IPR availablePANTHERPTHR10809:SF59VESICLE-ASSOCIATED PROTEIN 2-2coord: 1..102
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G573570ClCG03G016500Watermelon (Charleston Gray)cuwcgB046
Csa1G573570Cla97C03G066810Watermelon (97103) v2cuwmbB042
Csa1G573570Cucsa.289190Cucumber (Gy14) v1cgycuB414
Csa1G573570CmaCh10G010970Cucurbita maxima (Rimu)cmacuB068
Csa1G573570CmoCh10G011740Cucurbita moschata (Rifu)cmocuB058
Csa1G573570Cp4.1LG11g09230Cucurbita pepo (Zucchini)cpecuB091
Csa1G573570CsGy1G026360Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G573570Melon (DHL92) v3.5.1cumeB041
Csa1G573570Watermelon (97103) v1cuwmB020
Csa1G573570Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G573570Melon (DHL92) v3.6.1cumedB033
Csa1G573570Silver-seed gourdcarcuB0784
Csa1G573570Wax gourdcuwgoB108