CsGy6G003720 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G003720
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRetrotransposon gag protein
LocationChr6 : 3527791 .. 3529392 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCGTTATCGGGGAATGATACTACACAGTTACTTTCTTGAATTTTTGCTTATCTTTTTTTTTAGGAATTTTTAGAAAGCATATTACATATGTAGCTTTTCTTTGATATAATAAAAAAATAAAAAATATAGCATGTTAGTTATTTCCTTGTCTTGTGTTTAGTAGTGCATGACTAGGTCTTCTCTTGCTTCTAATCTACATTTCGTTTAAGACATAACCTTGCATGAAAGAAGATTAAAGAAAGAAAAGAGAAAACAAGTTAGTTCATCTCATGTAGAAATCTCGCATCCATATTTTTTAACCTTATTTAGAGAGACCTTTAGGGCCAAACCTAGAAAGTCCTATACATAATAGAATGGGAGAGAATTTCCAAAAAAATTCTAGTAAAACACTTGATTTAAATTCTTCATTATCTTGTGATAATTATGTAAAGAACAAGTGAATTTACTAACTAAACTTTTTGCTTCTTTTTTGAAGGGGGAGGTTCCTAAAGTCGCCTTTTGTGGAGTTTGTGGCTTGCTAGGCCACCACAGTGGTCAATGCCCAGAGATTAAAGAGGTAAGTGCCATGGGATGTTACATAAGAAATTATTCATAGAGTAAGACCTACAACTTTGGATGGAGGGACGATCCAAATTTTAGGTGGGGCCCTCAAGAACCAAAACCTATCAACACTATTTCTTCCTCATCATCATCACAAGGTACATACATAGAGAAGATTGTCTCCAGGTTAGCTCTTAGCTCGAATAGTTTCAAAACTGATTTTGAGAAAAACTTAGTTTAGTTGACTGAGCATACTGTTCATTGAACTGGAGGCATGAAAAACGACATAGAAATCATGACTAAGCATACTGTTAATTCAACTAGAGCCATGAAAAATGACTTAAAAATCATGAAAGCATCGGTTTCTGAGTTTGGAGAACCATAATCATTTAACAACACATGTTCTTAAAATGGAACGGAATGGCAAACTTTTCACCCAACCCGACCATGAAAATGTGAGTGCACTTAATACTTTAGAGTCATTAGAGACACTAGAAGAGCATGATAAATTGAAAAAGCTTGTTGACCAAGCAACTTTAGAATATATTGATAATGAATTTGCTAAGATCAACTCTAGTGATGATGATCTCTCTAGCTATCTTCTTTGACTTTGTTACTAGTGTAAATGATGAGAATGTCTTGGCTGATGATCTTGCGACAAATAGTCAACATGTTTTAGATAATGATTTTGCATCTAGTAACGAGCATGATCTAGGAAGAAACATTAATAATGATGAAGAGCATACCTTGTAAGGCATTGACATTGAAAGTGATCTTGGCACAAAGGTTACTAAAATTGTTTCGGAACTTGATGATGAGAAAATCTTTGAAAATGATAAATGTGACGAACTTACTTTAGATTTTGATGTTGACTTTGCACATGATCTTAATTTTGAGATCTTAGATGGAGTTAATAATGATTTTGTTCATGAGAACTTTGATGAAAGATTTAATATGATTGAAAATTCTCTAGAAAATCATGATGGTAGAATTTTATTACATAAAAATTTGATCATTGATGAATTTGCTAATAAATTTGTTGACAATGATGTTTAA

mRNA sequence

ATGGCGCCGTTATCGGGGAATGATACTACACAAAAGCATATTACATATGGGGAGGTTCCTAAAGTCGCCTTTTGTGGAGTTTGTGGCTTGCTAGGCCACCACAGTGGTCAATGCCCAGAGATTAAAGAGAGTAAGACCTACAACTTTGGATGGAGGGACGATCCAAATTTTAGGTGGGGCCCTCAAGAACCAAAACCTATCAACACTATTTCTTCCTCATCATCATCACAAGTGATGATGATCTCTCTAGCTATCTTCTTTGACTTTGTTACTAGTGTAAATGATGAGAATGTCTTGGCTGATGATCTTGCGACAAATAGTCAACATGTTTTAGATAATGATTTTGCATCTAGTAACGAGCATGATCTAGGAAGAAACATTAATAATGATGAAGAGCATACCTTTGATCTTGGCACAAAGGTTACTAAAATTGTTTCGGAACTTGATGATGAGAAAATCTTTGAAAATGATAAATGTGACGAACTTACTTTAGATTTTGATGTTGACTTTGCACATGATCTTAATTTTGAGATCTTAGATGGAGTTAATAATGATTTTGTTCATGAGAACTTTGATGAAAGATTTAATATGATTGAAAATTCTCTAGAAAATCATGATGGTAGAATTTTATTACATAAAAATTTGATCATTGATGAATTTGCTAATAAATTTGTTGACAATGATGTTTAA

Coding sequence (CDS)

ATGGCGCCGTTATCGGGGAATGATACTACACAAAAGCATATTACATATGGGGAGGTTCCTAAAGTCGCCTTTTGTGGAGTTTGTGGCTTGCTAGGCCACCACAGTGGTCAATGCCCAGAGATTAAAGAGAGTAAGACCTACAACTTTGGATGGAGGGACGATCCAAATTTTAGGTGGGGCCCTCAAGAACCAAAACCTATCAACACTATTTCTTCCTCATCATCATCACAAGTGATGATGATCTCTCTAGCTATCTTCTTTGACTTTGTTACTAGTGTAAATGATGAGAATGTCTTGGCTGATGATCTTGCGACAAATAGTCAACATGTTTTAGATAATGATTTTGCATCTAGTAACGAGCATGATCTAGGAAGAAACATTAATAATGATGAAGAGCATACCTTTGATCTTGGCACAAAGGTTACTAAAATTGTTTCGGAACTTGATGATGAGAAAATCTTTGAAAATGATAAATGTGACGAACTTACTTTAGATTTTGATGTTGACTTTGCACATGATCTTAATTTTGAGATCTTAGATGGAGTTAATAATGATTTTGTTCATGAGAACTTTGATGAAAGATTTAATATGATTGAAAATTCTCTAGAAAATCATGATGGTAGAATTTTATTACATAAAAATTTGATCATTGATGAATTTGCTAATAAATTTGTTGACAATGATGTTTAA

Protein sequence

MAPLSGNDTTQKHITYGEVPKVAFCGVCGLLGHHSGQCPEIKESKTYNFGWRDDPNFRWGPQEPKPINTISSSSSSQVMMISLAIFFDFVTSVNDENVLADDLATNSQHVLDNDFASSNEHDLGRNINNDEEHTFDLGTKVTKIVSELDDEKIFENDKCDELTLDFDVDFAHDLNFEILDGVNNDFVHENFDERFNMIENSLENHDGRILLHKNLIIDEFANKFVDNDV
Homology
[Close]
BLAST of CsGy6G003720 vs. NCBI nr
Match: KGN47319.1 (hypothetical protein Csa_6G295940 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 6.5e-17
Identity = 46/72 (63.89%), Postives = 49/72 (68.06%), Query Frame = 0 

Query: 17 GEVPKVAFCGVCGLLGHHSGQCPEIKE-------------SKTYNFGWRDDPNFRWGPQE 76
          GEVPKV  CGVCGLLGHH+ QCPEIKE             S  YN GWRDDP+ RWGPQE
Sbjct: 28 GEVPKVVSCGVCGLLGHHNDQCPEIKEVSALGGYRRNDSQSNAYNSGWRDDPSLRWGPQE 87

[Close]
BLAST of CsGy6G003720 vs. NCBI nr
Match: XP_008465471.1 (PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 21  KVAFCGVCGLLGHHSGQCPEIKE-----------SKTYNFGWRDDPNFRWGPQEPKPINT 76
           KV  CGVCGL+GH + +CPE+ E             TYN GWRD+PN RWG    K  + 
Sbjct: 72  KVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLRWGNDNQKHTHA 131

[Close]
BLAST of CsGy6G003720 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 0 

Query: 21 KVAFCGVCGLLGHHSGQCPEIKE-----------SKTYNFGWRDDPNFRWGPQEPKPINT 76
          KV  CGVCGL+GH + +CPE+ E             TYN GWRD+PN RWG    K    
Sbjct: 15 KVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQA 74

[Close]
BLAST of CsGy6G003720 vs. NCBI nr
Match: XP_008460738.1 (PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-06
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 0 

Query: 21  KVAFCGVCGLLGHHSGQCPEIKE-----------SKTYNFGWRDDPNFRWGPQEPK 66
           KV  CGVCGL+GH + +CPE+ E             TYN GWRD+PN RWG    K
Sbjct: 245 KVTKCGVCGLVGHLNDKCPELIEDVNIVRRYDPHGNTYNSGWRDNPNLRWGNDNQK 300

[Close]
BLAST of CsGy6G003720 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 8.8e-06
Identity = 28/70 (40.00%), Postives = 37/70 (52.86%), Query Frame = 0 

Query: 17  GEVPKVAFCGVCGLLGHHSGQCPEIKE-----------SKTYNFGWRDDPNFRWGPQEPK 76
           G   KV  CGVCGL+G+ + +CP++ E             TYN GWRD+PN RWG    K
Sbjct: 66  GTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNLRWGNDNQK 125

[Close]
BLAST of CsGy6G003720 vs. TrEMBL
Match: tr|A0A0A0KEQ8|A0A0A0KEQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.3e-17
Identity = 46/72 (63.89%), Postives = 49/72 (68.06%), Query Frame = 0 

Query: 17 GEVPKVAFCGVCGLLGHHSGQCPEIKE-------------SKTYNFGWRDDPNFRWGPQE 76
          GEVPKV  CGVCGLLGHH+ QCPEIKE             S  YN GWRDDP+ RWGPQE
Sbjct: 28 GEVPKVVSCGVCGLLGHHNDQCPEIKEVSALGGYRRNDSQSNAYNSGWRDDPSLRWGPQE 87

[Close]
BLAST of CsGy6G003720 vs. TrEMBL
Match: tr|A0A1S3CQF6|A0A1S3CQF6_CUCME (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 21  KVAFCGVCGLLGHHSGQCPEIKE-----------SKTYNFGWRDDPNFRWGPQEPKPINT 76
           KV  CGVCGL+GH + +CPE+ E             TYN GWRD+PN RWG    K  + 
Sbjct: 72  KVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLRWGNDNQKHTHA 131

[Close]
BLAST of CsGy6G003720 vs. TrEMBL
Match: tr|A0A1S4E3R2|A0A1S4E3R2_CUCME (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 0 

Query: 21 KVAFCGVCGLLGHHSGQCPEIKE-----------SKTYNFGWRDDPNFRWGPQEPKPINT 76
          KV  CGVCGL+GH + +CPE+ E             TYN GWRD+PN RWG    K    
Sbjct: 15 KVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQA 74

[Close]
BLAST of CsGy6G003720 vs. TrEMBL
Match: tr|A0A1S3CD34|A0A1S3CD34_CUCME (uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-06
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 0 

Query: 21  KVAFCGVCGLLGHHSGQCPEIKE-----------SKTYNFGWRDDPNFRWGPQEPK 66
           KV  CGVCGL+GH + +CPE+ E             TYN GWRD+PN RWG    K
Sbjct: 245 KVTKCGVCGLVGHLNDKCPELIEDVNIVRRYDPHGNTYNSGWRDNPNLRWGNDNQK 300

[Close]
BLAST of CsGy6G003720 vs. TrEMBL
Match: tr|A0A1S3CQU8|A0A1S3CQU8_CUCME (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.8e-06
Identity = 28/70 (40.00%), Postives = 37/70 (52.86%), Query Frame = 0 

Query: 17  GEVPKVAFCGVCGLLGHHSGQCPEIKE-----------SKTYNFGWRDDPNFRWGPQEPK 76
           G   KV  CGVCGL+G+ + +CP++ E             TYN GWRD+PN RWG    K
Sbjct: 66  GTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNLRWGNDNQK 125

The following BLAST results are available for this feature:
BLAST of CsGy6G003720 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47319.16.5e-1763.89hypothetical protein Csa_6G295940 [Cucumis sativus][more]
XP_008465471.12.1e-0745.45PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo][more]
XP_016902871.11.8e-0643.94PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo][more]
XP_008460738.15.2e-0648.21PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo][more]
XP_008465649.18.8e-0640.00PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo][more]
BLAST of CsGy6G003720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G003720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G003720 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KEQ8|A0A0A0KEQ8_CUCSA4.3e-1763.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1[more]
tr|A0A1S3CQF6|A0A1S3CQF6_CUCME1.4e-0745.45uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=... [more]
tr|A0A1S4E3R2|A0A1S4E3R2_CUCME1.2e-0643.94uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=... [more]
tr|A0A1S3CD34|A0A1S3CD34_CUCME3.4e-0648.21uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=... [more]
tr|A0A1S3CQU8|A0A1S3CQU8_CUCME5.8e-0640.00uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G003720.1CsGy6G003720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G003720Cucumber (Chinese Long) v2cgybcuB282
CsGy6G003720Bottle gourd (USVL1VR-Ls)cgyblsiB443
CsGy6G003720Melon (DHL92) v3.5.1cgybmeB417
CsGy6G003720Melon (DHL92) v3.6.1cgybmedB413
CsGy6G003720Wild cucumber (PI 183967)cgybcpiB288
CsGy6G003720Cucumber (Chinese Long) v3cgybcucB298
CsGy6G003720Watermelon (97103) v2cgybwmbB481