CsGy6G002520 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G002520
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	glucan endo-1,3-beta-glucosidase 8
Location	Chr6 : 1870324 .. 1872325 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGCAACTTTTTATGTACTTTTAAAAGTTAATAAACAACATCTCCATTTTGAACTTAATTAATTAGTTCTTCTATTACATTCTATTATCTTATGTTCTTACTTCTCTATTTTAACTATGTTATTACCTTCATTAAGTAAATGTTTAAAACCATAAGTGAATGTTATTACCTTCTTTTAAAAGTTAATAAACATCTTCATTTTGAACGACACACAAGTAAATGTTTAATACCATAGTTTTTAACAAACTAAAGCAACACAGATGTAACTTCATGGTTCTTGTATCACATTTATATATATGTGACTGGCTTATAATTAAACGGATATGAATGTGTGTGCATTTATTTTTCTTAGAAAGAGTCCGATTTTTTTGAAGTAAAAGTTCATGTCCATGGAAACCTTTTGTTTGGGGGCTTACAACTCGTAAGAATGGTTGTAATTTGACCCTCATATCAATAACCCACAAGCTTGTCGATCTCCAATGCATAATTGTTTGGGATTCTACCTTGGTACGTTACTTGTAATTTTATTTTTCATTTTTAAAAACTTATAAGTTCATATTTGATATAAAAATTTGTATGTATATAATTGGTATGCACAACCATAGTATTTTTTGGGATCTAGATAATGTTTTTGAGATGGTTTTGTTGGTAGAGGATTGATTCTGTTGGGAGGTGTTTGATAATGTTTTGAGAAATTCTTAAGTTTTTTTTATGAGATTTGATATGGGGGTGTTGTAATTTTCAAGGTTATGTGTGCAAAGGCAGTGGATAAGCTTCATTATTATGTTATTGAACTTCATGACCATTGAATGTTGTTAGACTTATATTGGAAAGTTTTCGAAGCTTTATTTTTCTCTTTTTCATCGGCTTGCAATCCTTAATATGTAAATTTAGAAAAACATTTTGTAGGTAGCTTTTCTTCATGTTTTCATGATTGGGAAGGTTTGGCTGATAGTATAGACTATGCTTGTAGTTTATCAGATGGTATTGCATTGGAATATGGATCTTCTTACAATCAATTAACTGCACAAGGTAACTCTTTACTTGCGTCTTTGTGGTTTTATATTGTTTGAATAGTGTATAGTTTGTTCATGTTCTTATACCTTTATACACTCTCTTTTTTTTTTTTGAATTATCTAATTCTTGGTAATATATTTTCCATCCTTATTTGGTGTCAATGGAGAATTGTATTGTACACACTTCTACAATGAAGAGTGATAATCTATTTTTAATTATGTAGTTCTTGGTAAGCCCTTGCTGGTGAAGAATTTCAAAAATTTCTGCTCAATTATATCCACCATTTCATGTGTTCAACATATCATGTTTAAAACTATTTTACATAAGCTTTTTTTAGGATATTTTGATCCTTCTTTTAGTGGTACAGAAGTCACATAGAGCTATTATGCTAGTACAAGTCTCTTAGCAATTGCAGAAAAATCATATTAAAATAAACTTTTGTCACTAAAAAACTTGATGAATTCATAACGTCATATTAGTTTTAAGTACTCTCAATTAAAGTTTAACTATGTTCTTCTCAGTTTGGAGGGTGTCGAAACTGTTGTTCAATGAAGAAGTGTTTATCCTTTTTTCCAGTAGATGCAAAACTCACTTATAAGACAAGAGTGATTACTGAAGTTTTTATACCTAGTTGAAAGCTAATCTTATGTGTACTTGTTATGATGTCTTTCCCTACAAAATACCATATTTTTGTTGTGCTCAAAGATGAATACCCCACTACATTCTTTTTCTGCAGTTTCACTTTTTCTACAATGATAGAGAATATGTCGATGATATGGGAAGCCATAAAGACTTACTATTATGTTACAAGGGTAGATATTACAACTTGTTTGAGGAATTTTCTCTTCACTTTCTTTATATACTTTCTCTAGTCCACCTTTGTTGCATATTTCAAATATGTTTTTTGATAGGTTCTATTATTTATGCACTGTTATTTGGTTTGACATTGTTGTATATCTGGATTTTTTATCTTTGGAGG

mRNA sequence

ATGGAGGAGCAACTTTTTATAGGATTGATTCTGTTGGGAGGTAGCTTTTCTTCATGTTTTCATGATTGGGAAGGTTTGGCTGATAGTATAGACTATGCTTGTAGTTTATCAGATGGTATTGCATTGGAATATGGATCTTCTTACAATCAATTAACTGCACAAGTGGTACAGAAGTCACATAGAGCTATTATGCTATTTGGAGGGTGTCGAAACTGTTGTTCAATGAAGAAGTGTTTATCCTTTTTTCCAGTAGATGCAAAACTCACTTATAAGACAAGAGTGATTACTGAATTTCACTTTTTCTACAATGATAGAGAATATGTCGATGATATGGGAAGCCATAAAGACTTACTATTATGTTACAAGGGTTCTATTATTTATGCACTGTTATTTGGTTTGACATTGTTGTATATCTGGATTTTTTATCTTTGGAGG

Coding sequence (CDS)

ATGGAGGAGCAACTTTTTATAGGATTGATTCTGTTGGGAGGTAGCTTTTCTTCATGTTTTCATGATTGGGAAGGTTTGGCTGATAGTATAGACTATGCTTGTAGTTTATCAGATGGTATTGCATTGGAATATGGATCTTCTTACAATCAATTAACTGCACAAGTGGTACAGAAGTCACATAGAGCTATTATGCTATTTGGAGGGTGTCGAAACTGTTGTTCAATGAAGAAGTGTTTATCCTTTTTTCCAGTAGATGCAAAACTCACTTATAAGACAAGAGTGATTACTGAATTTCACTTTTTCTACAATGATAGAGAATATGTCGATGATATGGGAAGCCATAAAGACTTACTATTATGTTACAAGGGTTCTATTATTTATGCACTGTTATTTGGTTTGACATTGTTGTATATCTGGATTTTTTATCTTTGGAGG

Protein sequence

MEEQLFIGLILLGGSFSSCFHDWEGLADSIDYACSLSDGIALEYGSSYNQLTAQVVQKSHRAIMLFGGCRNCCSMKKCLSFFPVDAKLTYKTRVITEFHFFYNDREYVDDMGSHKDLLLCYKGSIIYALLFGLTLLYIWIFYLWR

Homology

[Close]

BLAST of CsGy6G002520 vs. NCBI nr
Match: XP_008458070.1 (PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 21  HDWEGLADSIDYACSLSDGIALEYGSSYNQLTAQ 55
           +DWEGLADS+DYACSLSD  ALEYGSS NQLTAQ
Sbjct: 379 NDWEGLADSVDYACSLSDCTALEYGSSCNQLTAQ 412

[Close]

BLAST of CsGy6G002520 vs. NCBI nr
Match: XP_022157557.1 (glucan endo-1,3-beta-glucosidase 8 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 21  HDWEGLADSIDYACSLSDGIALEYGSSYNQLTAQ 55
           +DWEGLAD++DYACSLSD  ALEYGSS NQLTAQ
Sbjct: 382 NDWEGLADNVDYACSLSDCTALEYGSSCNQLTAQ 415

[Close]

BLAST of CsGy6G002520 vs. NCBI nr
Match: KGN60639.1 (hypothetical protein Csa_2G005360 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 21  HDWEGLADSIDYACSLSDGIALEYGSSYNQLTAQ 55
           +DWEGLADS+DYACSLSD  ALEYGSS NQL+AQ
Sbjct: 361 NDWEGLADSVDYACSLSDCTALEYGSSCNQLSAQ 394

[Close]

BLAST of CsGy6G002520 vs. NCBI nr
Match: XP_004139424.2 (PREDICTED: glucan endo-1,3-beta-glucosidase 8 isoform X1 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 21  HDWEGLADSIDYACSLSDGIALEYGSSYNQLTAQ 55
           +DWEGLADS+DYACSLSD  ALEYGSS NQL+AQ
Sbjct: 379 NDWEGLADSVDYACSLSDCTALEYGSSCNQLSAQ 412

[Close]

BLAST of CsGy6G002520 vs. NCBI nr
Match: XP_011648666.1 (PREDICTED: glucan endo-1,3-beta-glucosidase 8 isoform X2 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 21  HDWEGLADSIDYACSLSDGIALEYGSSYNQLTAQ 55
           +DWEGLADS+DYACSLSD  ALEYGSS NQL+AQ
Sbjct: 278 NDWEGLADSVDYACSLSDCTALEYGSSCNQLSAQ 311

[Close]

BLAST of CsGy6G002520 vs. TAIR10
Match: AT3G24330.1 (O-Glycosyl hydrolases family 17 protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 21  HDWEGLADSIDYACSLSDGIALEYGSSYNQLTA 54
           ++ + L D+IDYACSLSD  AL YGSS N LTA
Sbjct: 390 YNLDDLPDNIDYACSLSDCTALGYGSSCNHLTA 422

[Close]

BLAST of CsGy6G002520 vs. TrEMBL
Match: tr|A0A1S3C742|A0A1S3C742_CUCME (glucan endo-1,3-beta-glucosidase 8 OS=Cucumis melo OX=3656 GN=LOC103497605 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.5e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 21  HDWEGLADSIDYACSLSDGIALEYGSSYNQLTAQ 55
           +DWEGLADS+DYACSLSD  ALEYGSS NQLTAQ
Sbjct: 379 NDWEGLADSVDYACSLSDCTALEYGSSCNQLTAQ 412

[Close]

BLAST of CsGy6G002520 vs. TrEMBL
Match: tr|A0A0A0LHZ1|A0A0A0LHZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005360 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 21  HDWEGLADSIDYACSLSDGIALEYGSSYNQLTAQ 55
           +DWEGLADS+DYACSLSD  ALEYGSS NQL+AQ
Sbjct: 361 NDWEGLADSVDYACSLSDCTALEYGSSCNQLSAQ 394

The following BLAST results are available for this feature:

BLAST of CsGy6G002520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458070.1	1.1e-06	85.29	PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Cucumis melo]	[more]
XP_022157557.1	2.5e-06	82.35	glucan endo-1,3-beta-glucosidase 8 [Momordica charantia]	[more]
KGN60639.1	3.3e-06	82.35	hypothetical protein Csa_2G005360 [Cucumis sativus]	[more]
XP_004139424.2	3.3e-06	82.35	PREDICTED: glucan endo-1,3-beta-glucosidase 8 isoform X1 [Cucumis sativus]	[more]
XP_011648666.1	3.3e-06	82.35	PREDICTED: glucan endo-1,3-beta-glucosidase 8 isoform X2 [Cucumis sativus]	[more]

BLAST of CsGy6G002520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24330.1	1.7e-04	63.64	O-Glycosyl hydrolases family 17 protein	[more]

BLAST of CsGy6G002520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G002520 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C742\|A0A1S3C742_CUCME	7.5e-07	85.29	glucan endo-1,3-beta-glucosidase 8 OS=Cucumis melo OX=3656 GN=LOC103497605 PE=3 ...	[more]
tr\|A0A0A0LHZ1\|A0A0A0LHZ1_CUCSA	2.2e-06	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005360 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G002520.1	CsGy6G002520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G002520	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G002520	Watermelon (97103) v2	cgybwmbB466
CsGy6G002520	Wax gourd	cgybwgoB561
CsGy6G002520	Cucurbita maxima (Rimu)	cgybcmaB700
CsGy6G002520	Cucurbita maxima (Rimu)	cgybcmaB774
CsGy6G002520	Cucurbita maxima (Rimu)	cgybcmaB777
CsGy6G002520	Cucurbita moschata (Rifu)	cgybcmoB683
CsGy6G002520	Cucurbita moschata (Rifu)	cgybcmoB753
CsGy6G002520	Cucurbita pepo (Zucchini)	cgybcpeB822
CsGy6G002520	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G002520	Bottle gourd (USVL1VR-Ls)	cgyblsiB438
CsGy6G002520	Melon (DHL92) v3.5.1	cgybmeB409
CsGy6G002520	Melon (DHL92) v3.6.1	cgybmedB413
CsGy6G002520	Watermelon (Charleston Gray)	cgybwcgB457
CsGy6G002520	Watermelon (97103) v1	cgybwmB446
CsGy6G002520	Wild cucumber (PI 183967)	cgybcpiB288