CsGy6G002010 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G002010
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptioncopper transport protein CCH
LocationChr6 : 1433125 .. 1433531 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGAATGGCTAATGCAAGTATTTCTAAGAGAGAAAATTCTTGGAATTTGATTTCTTACGGGTTCTAATGGGTGTTGTTTTTCTGGCCATAGGTGGTGGAATTGAAGGTCTTTTTGCATTGTGAGGAGTGTATCAAGAAGATTCTCAAAGCCATCAAGAAAATCCAAGGTTTGTGTTTTCAATGTCTTCGTCAGAGCCTCCTATGGTTAAGTAATTCATTTGGGGTTTATTTTCCTTTCTTTTCTTCTCCATTTGCAGATATAGAAACATATAATGTAGATATGGAGATGAACAAAGTGATTGTTACAGGCAATGTCACTAACGAAGAAGTTATCAAAGTTCTTCAGAAAATTAGAAAAACTGCAATTCCATGGCAAGATGATGAACTCAACAACATTAATTACTAG

mRNA sequence

ACAGAATGGCTAATGCAAGTGGTGGAATTGAAGGTCTTTTTGCATTGTGAGGAGTGTATCAAGAAGATTCTCAAAGCCATCAAGAAAATCCAAGGTTTGTGTTTTCAATGTCTTCGTCAGAGCCTCCTATGGTTAAGTAATTCATTTGGGGTTTATTTTCCTTTCTTTTCTTCTCCATTTGCAGATATAGAAACATATAATGTAGATATGGAGATGAACAAAGTGATTGTTACAGGCAATGTCACTAACGAAGAAGTTATCAAAGTTCTTCAGAAAATTAGAAAAACTGCAATTCCATGGCAAGATGATGAACTCAACAACATTAATTACTAG

Coding sequence (CDS)

ACAGAATGGCTAATGCAAGTGGTGGAATTGAAGGTCTTTTTGCATTGTGAGGAGTGTATCAAGAAGATTCTCAAAGCCATCAAGAAAATCCAAGGTTTGTGTTTTCAATGTCTTCGTCAGAGCCTCCTATGGTTAAGTAATTCATTTGGGGTTTATTTTCCTTTCTTTTCTTCTCCATTTGCAGATATAGAAACATATAATGTAGATATGGAGATGAACAAAGTGATTGTTACAGGCAATGTCACTAACGAAGAAGTTATCAAAGTTCTTCAGAAAATTAGAAAAACTGCAATTCCATGGCAAGATGATGAACTCAACAACATTAATTACTAG

Protein sequence

TEWLMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY
Homology
[Close]
BLAST of CsGy6G002010 vs. NCBI nr
Match: XP_004138408.1 (PREDICTED: copper transport protein ATX1 [Cucumis sativus] >KGN45813.1 hypothetical protein Csa_6G013360 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 8.8e-28
Identity = 74/107 (69.16%), Postives = 75/107 (70.09%), Query Frame = 0 

Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKVFLHCEECIKKILKAIKKIQ                              DI
Sbjct: 1   MANVVELKVFLHCEECIKKILKAIKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY 111
           ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY
Sbjct: 61  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY 77

[Close]
BLAST of CsGy6G002010 vs. NCBI nr
Match: XP_008456748.1 (PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 70/105 (66.67%), Postives = 73/105 (69.52%), Query Frame = 0 

Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKVFLHC+ECIKKILKAIKKIQ                              DI
Sbjct: 1   MANVVELKVFLHCDECIKKILKAIKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNI 109
           ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTA+PWQDDELNNI
Sbjct: 61  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAVPWQDDELNNI 75

[Close]
BLAST of CsGy6G002010 vs. NCBI nr
Match: XP_022133451.1 (copper transport protein ATX1 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 4.4e-19
Identity = 60/104 (57.69%), Postives = 65/104 (62.50%), Query Frame = 0 

Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKV LHCE+CIKKILKAIKKIQ                              DI
Sbjct: 41  MANVVELKVGLHCEDCIKKILKAIKKIQ------------------------------DI 100

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 108
           ETYNVD ++NKV VTGNVT EEVIKVL KI KTAIPWQ DE+NN
Sbjct: 101 ETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNN 114

[Close]
BLAST of CsGy6G002010 vs. NCBI nr
Match: KDP21700.1 (hypothetical protein JCGZ_03371 [Jatropha curcas])

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 57/102 (55.88%), Postives = 63/102 (61.76%), Query Frame = 0 

Query: 6   QVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIET 65
           QVVELKV LHCEECIKKILKAIKKIQ                              DIET
Sbjct: 7   QVVELKVGLHCEECIKKILKAIKKIQ------------------------------DIET 66

Query: 66  YNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 108
           YNVD+E+NKVIVTGNVT EEVIKV+ KI KTA  W++   N+
Sbjct: 67  YNVDIELNKVIVTGNVTTEEVIKVIHKIGKTATTWEEYSTNS 78

[Close]
BLAST of CsGy6G002010 vs. NCBI nr
Match: XP_011469959.1 (PREDICTED: uncharacterized protein LOC101293633 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 96.3 bits (238), Expect = 7.0e-17
Identity = 57/99 (57.58%), Postives = 64/99 (64.65%), Query Frame = 0 

Query: 7   VVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIETY 66
           VVELKV LHCEECIKKILKAIKKI+                             ADIETY
Sbjct: 4   VVELKVGLHCEECIKKILKAIKKIE-----------------------------ADIETY 63

Query: 67  NVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPW-QDDE 105
           +VD ++NKVIVTGNVT E+VI+ LQKI+KTAIPW Q DE
Sbjct: 64  DVDTQLNKVIVTGNVTTEQVIRALQKIKKTAIPWDQQDE 73

[Close]
BLAST of CsGy6G002010 vs. TAIR10
Match: AT5G05365.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-17
Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKV LHC+ECI+KILKAIKKI+                              DI
Sbjct: 1   MANVVELKVNLHCDECIRKILKAIKKIE------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDD 104
           E Y+VD ++NKV VTGNVT E+VI+VLQK+RK A+ W  D
Sbjct: 61  EAYDVDTQLNKVTVTGNVTEEQVIRVLQKVRKAAVKWDQD 70

[Close]
BLAST of CsGy6G002010 vs. TAIR10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-05
Identity = 31/100 (31.00%), Postives = 42/100 (42.00%), Query Frame = 0 

Query: 10  LKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIETYNVD 69
           L+V +HCE C +KI K + KI G                              + T N+D
Sbjct: 34  LRVSIHCEGCKRKIKKILSKIDG------------------------------VYTTNID 93

Query: 70  MEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNIN 110
           ++  KV V GNV  E +IK + K  + A  W     NNIN
Sbjct: 94  VKQQKVTVIGNVEPEILIKKIMKAGRHAELWPTSMENNIN 103

[Close]
BLAST of CsGy6G002010 vs. TAIR10
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 9.7e-05
Identity = 27/96 (28.12%), Postives = 45/96 (46.88%), Query Frame = 0 

Query: 5   MQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIE 64
           + +VEL V + C+ C KK+ +AI K+ G                              ++
Sbjct: 15  LSIVELLVDMDCKGCEKKVRRAISKLDG------------------------------VD 74

Query: 65  TYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPW 101
           T  +D++  KV VTG V  EEV+K++++  +TA  W
Sbjct: 75  TVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTAEYW 80

[Close]
BLAST of CsGy6G002010 vs. TrEMBL
Match: tr|A0A0A0K8N1|A0A0A0K8N1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.8e-28
Identity = 74/107 (69.16%), Postives = 75/107 (70.09%), Query Frame = 0 

Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKVFLHCEECIKKILKAIKKIQ                              DI
Sbjct: 1   MANVVELKVFLHCEECIKKILKAIKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY 111
           ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY
Sbjct: 61  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY 77

[Close]
BLAST of CsGy6G002010 vs. TrEMBL
Match: tr|A0A1S3C423|A0A1S3C423_CUCME (superoxide dismutase 1 copper chaperone OS=Cucumis melo OX=3656 GN=LOC103496596 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.1e-26
Identity = 70/105 (66.67%), Postives = 73/105 (69.52%), Query Frame = 0 

Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKVFLHC+ECIKKILKAIKKIQ                              DI
Sbjct: 1   MANVVELKVFLHCDECIKKILKAIKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNI 109
           ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTA+PWQDDELNNI
Sbjct: 61  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAVPWQDDELNNI 75

[Close]
BLAST of CsGy6G002010 vs. TrEMBL
Match: tr|A0A067JNY7|A0A067JNY7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03371 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 57/102 (55.88%), Postives = 63/102 (61.76%), Query Frame = 0 

Query: 6   QVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIET 65
           QVVELKV LHCEECIKKILKAIKKIQ                              DIET
Sbjct: 7   QVVELKVGLHCEECIKKILKAIKKIQ------------------------------DIET 66

Query: 66  YNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 108
           YNVD+E+NKVIVTGNVT EEVIKV+ KI KTA  W++   N+
Sbjct: 67  YNVDIELNKVIVTGNVTTEEVIKVIHKIGKTATTWEEYSTNS 78

[Close]
BLAST of CsGy6G002010 vs. TrEMBL
Match: tr|A0A2C9VMM9|A0A2C9VMM9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G136400 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-17
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 0 

Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKV LHC+ECIKKILKA+KKIQ                              DI
Sbjct: 1   MTNVVELKVGLHCDECIKKILKAVKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 108
           ETYNVD+E+NKVIVTGNVT EEVI+V+QKI KTA  W  D+ N+
Sbjct: 61  ETYNVDIELNKVIVTGNVTTEEVIRVIQKIGKTATAWDGDQTNS 74

[Close]
BLAST of CsGy6G002010 vs. TrEMBL
Match: tr|A0A2P4HGR6|A0A2P4HGR6_QUESU (Copper transport protein atx1 OS=Quercus suber OX=58331 GN=CFP56_45816 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-17
Identity = 55/100 (55.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 7   VVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIETY 66
           VVELKV LHCE+CIKKILKAIKK+Q                              DIETY
Sbjct: 4   VVELKVGLHCEDCIKKILKAIKKMQ------------------------------DIETY 63

Query: 67  NVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELN 107
           NVD ++NKVIVTGNVTNEEVI+VLQKI K+A  W+ +E+N
Sbjct: 64  NVDTQLNKVIVTGNVTNEEVIRVLQKIGKSASTWEGEEIN 73

The following BLAST results are available for this feature:
BLAST of CsGy6G002010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138408.18.8e-2869.16PREDICTED: copper transport protein ATX1 [Cucumis sativus] >KGN45813.1 hypotheti... [more]
XP_008456748.11.1e-2566.67PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo][more]
XP_022133451.14.4e-1957.69copper transport protein ATX1 [Momordica charantia][more]
KDP21700.15.3e-1755.88hypothetical protein JCGZ_03371 [Jatropha curcas][more]
XP_011469959.17.0e-1757.58PREDICTED: uncharacterized protein LOC101293633 isoform X1 [Fragaria vesca subsp... [more]
BLAST of CsGy6G002010 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G05365.12.2e-1748.00Heavy metal transport/detoxification superfamily protein [more]
AT5G27690.17.5e-0531.00Heavy metal transport/detoxification superfamily protein [more]
AT3G56891.19.7e-0528.13Heavy metal transport/detoxification superfamily protein [more]
BLAST of CsGy6G002010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G002010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K8N1|A0A0A0K8N1_CUCSA5.8e-2869.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV=1[more]
tr|A0A1S3C423|A0A1S3C423_CUCME7.1e-2666.67superoxide dismutase 1 copper chaperone OS=Cucumis melo OX=3656 GN=LOC103496596 ... [more]
tr|A0A067JNY7|A0A067JNY7_JATCU3.5e-1755.88Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03371 PE=4 SV=1[more]
tr|A0A2C9VMM9|A0A2C9VMM9_MANES4.6e-1752.88Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G136400 PE=4 SV=... [more]
tr|A0A2P4HGR6|A0A2P4HGR6_QUESU6.0e-1755.00Copper transport protein atx1 OS=Quercus suber OX=58331 GN=CFP56_45816 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G002010.1CsGy6G002010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.70.100coord: 5..98
e-value: 1.2E-12
score: 49.9
NoneNo IPR availablePANTHERPTHR22814COPPER TRANSPORT PROTEIN ATOX1-RELATEDcoord: 61..104
NoneNo IPR availablePANTHERPTHR22814:SF60HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEINcoord: 6..32
NoneNo IPR availablePANTHERPTHR22814COPPER TRANSPORT PROTEIN ATOX1-RELATEDcoord: 6..32
NoneNo IPR availablePANTHERPTHR22814:SF60HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEINcoord: 61..104

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G002010Csa6G013360Cucumber (Chinese Long) v2cgybcuB282
CsGy6G002010MELO3C019982Melon (DHL92) v3.5.1cgybmeB418
CsGy6G002010CSPI06G01920Wild cucumber (PI 183967)cgybcpiB288
CsGy6G002010MELO3C019982.2Melon (DHL92) v3.6.1cgybmedB413
CsGy6G002010CsaV3_6G002070Cucumber (Chinese Long) v3cgybcucB298
CsGy6G002010Cla97C11G212830Watermelon (97103) v2cgybwmbB403
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G002010Cucumber (Gy14) v2cgybcgybB130
CsGy6G002010Cucumber (Gy14) v2cgybcgybB145
CsGy6G002010Cucurbita maxima (Rimu)cgybcmaB741
CsGy6G002010Cucurbita maxima (Rimu)cgybcmaB832
CsGy6G002010Cucurbita maxima (Rimu)cgybcmaB836
CsGy6G002010Cucurbita maxima (Rimu)cgybcmaB840
CsGy6G002010Cucurbita maxima (Rimu)cgybcmaB842
CsGy6G002010Cucurbita moschata (Rifu)cgybcmoB722
CsGy6G002010Cucurbita moschata (Rifu)cgybcmoB812
CsGy6G002010Cucurbita moschata (Rifu)cgybcmoB816
CsGy6G002010Cucurbita moschata (Rifu)cgybcmoB820
CsGy6G002010Cucurbita pepo (Zucchini)cgybcpeB711
CsGy6G002010Cucurbita pepo (Zucchini)cgybcpeB741
CsGy6G002010Cucurbita pepo (Zucchini)cgybcpeB798
CsGy6G002010Cucurbita pepo (Zucchini)cgybcpeB803
CsGy6G002010Cucumber (Chinese Long) v2cgybcuB270
CsGy6G002010Cucumber (Chinese Long) v2cgybcuB277
CsGy6G002010Bottle gourd (USVL1VR-Ls)cgyblsiB396
CsGy6G002010Bottle gourd (USVL1VR-Ls)cgyblsiB409
CsGy6G002010Bottle gourd (USVL1VR-Ls)cgyblsiB424
CsGy6G002010Melon (DHL92) v3.5.1cgybmeB398
CsGy6G002010Melon (DHL92) v3.5.1cgybmeB450
CsGy6G002010Melon (DHL92) v3.6.1cgybmedB445
CsGy6G002010Watermelon (Charleston Gray)cgybwcgB397
CsGy6G002010Watermelon (Charleston Gray)cgybwcgB429
CsGy6G002010Watermelon (Charleston Gray)cgybwcgB451
CsGy6G002010Watermelon (97103) v1cgybwmB452
CsGy6G002010Watermelon (97103) v1cgybwmB455
CsGy6G002010Watermelon (97103) v1cgybwmB476
CsGy6G002010Watermelon (97103) v1cgybwmB497
CsGy6G002010Wild cucumber (PI 183967)cgybcpiB277
CsGy6G002010Silver-seed gourdcarcgybB0023
CsGy6G002010Silver-seed gourdcarcgybB0284
CsGy6G002010Silver-seed gourdcarcgybB0562
CsGy6G002010Silver-seed gourdcarcgybB0673
CsGy6G002010Cucumber (Chinese Long) v3cgybcucB283
CsGy6G002010Cucumber (Chinese Long) v3cgybcucB292
CsGy6G002010Watermelon (97103) v2cgybwmbB435
CsGy6G002010Watermelon (97103) v2cgybwmbB459
CsGy6G002010Wax gourdcgybwgoB558
CsGy6G002010Wax gourdcgybwgoB596