CsGy5G030560 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAGAACATTGAAAGAAGCGTCGGGAATAATGAAGTTGGCGGAGGAGATGAAATGGAAGAGATGCCCAGATTGCAAGAACTTAGTGGAGAGGATTGGGGGTTGCTCTCATATTATCTGCATATGTGGATCTCACTTTTGCTATACTTGTGGAACTCACTGGTCTCCACACCATGAATGTCCCATCTAAATCTCTGTAACATTACTTTTCTTCTCACTGATTATATATATCTTACTTGTTTCTAATTAATAAAACTCTAACTCCATTCTCATGATGATCATCTTAATTGTTTTTTGTTTGCAGGCAGTGCAGGACTAAACCTATAA ATGGAAAGAACATTGAAAGAAGCGTCGGGAATAATGAAGTTGGCGGAGGAGATGAAATGGAAGAGATGCCCAGATTGCAAGAACTTAGTGGAGAGGATTGGGGGTTGCTCTCATATTATCTGCATATGTGGATCTCACTTTTGCTATACTTGTGGAACTCACTGGTCTCCACACCATGAATGCAGTGCAGGACTAAACCTATAA ATGGAAAGAACATTGAAAGAAGCGTCGGGAATAATGAAGTTGGCGGAGGAGATGAAATGGAAGAGATGCCCAGATTGCAAGAACTTAGTGGAGAGGATTGGGGGTTGCTCTCATATTATCTGCATATGTGGATCTCACTTTTGCTATACTTGTGGAACTCACTGGTCTCCACACCATGAATGCAGTGCAGGACTAAACCTATAA MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHECSAGLNL
BLAST of CsGy5G030560 vs. NCBI nr
Match: KGN52694.1 (hypothetical protein Csa_5G650590 [Cucumis sativus]) HSP 1 Score: 142.9 bits (359), Expect = 4.0e-31 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0
BLAST of CsGy5G030560 vs. NCBI nr
Match: XP_022956145.1 (probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata]) HSP 1 Score: 85.5 bits (210), Expect = 7.5e-14 Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of CsGy5G030560 vs. NCBI nr
Match: XP_023527456.1 (probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo] >XP_023527457.1 probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo]) HSP 1 Score: 85.1 bits (209), Expect = 9.8e-14 Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0
BLAST of CsGy5G030560 vs. NCBI nr
Match: XP_022980686.1 (probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima]) HSP 1 Score: 82.0 bits (201), Expect = 8.3e-13 Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of CsGy5G030560 vs. NCBI nr
Match: RCW19319.1 (hypothetical protein GLYMA_07G044500 [Glycine max]) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11 Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0
BLAST of CsGy5G030560 vs. TAIR10
Match: AT3G14250.1 (RING/U-box superfamily protein) HSP 1 Score: 68.6 bits (166), Expect = 1.7e-12 Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0
BLAST of CsGy5G030560 vs. TAIR10
Match: AT5G37560.1 (RING/U-box superfamily protein) HSP 1 Score: 64.3 bits (155), Expect = 3.2e-11 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 0
BLAST of CsGy5G030560 vs. TAIR10
Match: AT2G21420.1 (IBR domain containing protein) HSP 1 Score: 62.8 bits (151), Expect = 9.4e-11 Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 0
BLAST of CsGy5G030560 vs. TAIR10
Match: AT3G45580.1 (RING/U-box protein with C6HC-type zinc finger) HSP 1 Score: 59.3 bits (142), Expect = 1.0e-09 Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 0
BLAST of CsGy5G030560 vs. TAIR10
Match: AT3G53690.1 (RING/U-box superfamily protein) HSP 1 Score: 58.2 bits (139), Expect = 2.3e-09 Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0
BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|Q9US46|ITT1_SCHPO (E3 ubiquitin-protein ligase itt1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=itt1 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07 Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 0
BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|F4KGU4|DEAHC_ARATH (ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 8.7e-06 Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0
BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|P0CE10|DEAHB_ARATH (ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05 Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0
BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|Q22431|ARI2_CAEEL (Potential E3 ubiquitin-protein ligase ariadne-2 OS=Caenorhabditis elegans OX=6239 GN=T12E12.1 PE=3 SV=2) HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05 Identity = 21/47 (44.68%), Postives = 27/47 (57.45%), Query Frame = 0
BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|Q9LVW9|ARI4_ARATH (Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana OX=3702 GN=ARI4 PE=5 SV=2) HSP 1 Score: 47.8 bits (112), Expect = 5.7e-05 Identity = 19/54 (35.19%), Postives = 28/54 (51.85%), Query Frame = 0
BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A0A0KUV8|A0A0A0KUV8_CUCSA (RBR-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G650590 PE=3 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 2.6e-31 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0
BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A0A0L952|A0A0A0L952_CUCSA (RBR-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G646570 PE=3 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11 Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 0
BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A199W5C8|A0A199W5C8_ANACO (RBR-type E3 ubiquitin transferase OS=Ananas comosus OX=4615 GN=ACMD2_15401 PE=3 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11 Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0
BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A0R0EWZ7|A0A0R0EWZ7_SOYBN (RBR-type E3 ubiquitin transferase OS=Glycine max OX=3847 GN=GLYMA_18G064500 PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 5.1e-11 Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0
BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A151QLQ8|A0A151QLQ8_CAJCA (RBR-type E3 ubiquitin transferase OS=Cajanus cajan OX=3821 GN=KK1_048617 PE=3 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 6.7e-11 Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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