CsGy5G030560 (gene) Cucumber (Gy14) v2

NameCsGy5G030560
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRING-type E3 ubiquitin transferase
LocationChr5 : 33510529 .. 33510857 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGAACATTGAAAGAAGCGTCGGGAATAATGAAGTTGGCGGAGGAGATGAAATGGAAGAGATGCCCAGATTGCAAGAACTTAGTGGAGAGGATTGGGGGTTGCTCTCATATTATCTGCATATGTGGATCTCACTTTTGCTATACTTGTGGAACTCACTGGTCTCCACACCATGAATGTCCCATCTAAATCTCTGTAACATTACTTTTCTTCTCACTGATTATATATATCTTACTTGTTTCTAATTAATAAAACTCTAACTCCATTCTCATGATGATCATCTTAATTGTTTTTTGTTTGCAGGCAGTGCAGGACTAAACCTATAA

mRNA sequence

ATGGAAAGAACATTGAAAGAAGCGTCGGGAATAATGAAGTTGGCGGAGGAGATGAAATGGAAGAGATGCCCAGATTGCAAGAACTTAGTGGAGAGGATTGGGGGTTGCTCTCATATTATCTGCATATGTGGATCTCACTTTTGCTATACTTGTGGAACTCACTGGTCTCCACACCATGAATGCAGTGCAGGACTAAACCTATAA

Coding sequence (CDS)

ATGGAAAGAACATTGAAAGAAGCGTCGGGAATAATGAAGTTGGCGGAGGAGATGAAATGGAAGAGATGCCCAGATTGCAAGAACTTAGTGGAGAGGATTGGGGGTTGCTCTCATATTATCTGCATATGTGGATCTCACTTTTGCTATACTTGTGGAACTCACTGGTCTCCACACCATGAATGCAGTGCAGGACTAAACCTATAA

Protein sequence

MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHECSAGLNL
BLAST of CsGy5G030560 vs. NCBI nr
Match: KGN52694.1 (hypothetical protein Csa_5G650590 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 4.0e-31
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1   MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHE 60
           MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHE
Sbjct: 49  MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHE 108

Query: 61  C 62
           C
Sbjct: 109 C 109

BLAST of CsGy5G030560 vs. NCBI nr
Match: XP_022956145.1 (probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata])

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-14
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 6   KEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHEC 62
           +E    MKLA+E KWKRCP CK LVE+I GC HI C CGS FCY CG  W+ HH C
Sbjct: 215 REEEMTMKLADERKWKRCPHCKILVEKIEGCLHITCRCGSEFCYCCGAKWNGHHAC 270

BLAST of CsGy5G030560 vs. NCBI nr
Match: XP_023527456.1 (probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo] >XP_023527457.1 probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 9.8e-14
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 12  MKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHEC 62
           MKLA+E KWKRCP CK LVE+I GC HI C CGS FCY+CG  W+ HH C
Sbjct: 165 MKLADERKWKRCPHCKILVEKIEGCLHITCRCGSEFCYSCGAKWNGHHAC 214

BLAST of CsGy5G030560 vs. NCBI nr
Match: XP_022980686.1 (probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 8.3e-13
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 6   KEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHEC 62
           +E    MKLA+E KWKRCP CK LVE+I GC HI C CGS FCY+CG  W+  H C
Sbjct: 214 REEEMTMKLADERKWKRCPHCKILVEKILGCLHITCRCGSEFCYSCGGKWNDRHAC 269

BLAST of CsGy5G030560 vs. NCBI nr
Match: RCW19319.1 (hypothetical protein GLYMA_07G044500 [Glycine max])

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 11  IMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHEC 62
           +M+LA+   WKRCP C   VERI GC+HI C CG+ FCY CG+ W  HH C
Sbjct: 238 VMELAKNKNWKRCPKCSFYVERIDGCTHISCRCGNEFCYACGSKWGSHHAC 288

BLAST of CsGy5G030560 vs. TAIR10
Match: AT3G14250.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-12
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 11  IMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHEC 62
           ++++A+  +W+RCP CK  V+++ GC HI C CG  FCY CG+ WS  H C
Sbjct: 249 LIQMAKNKQWRRCPSCKFYVDKVEGCQHIKCRCGYQFCYGCGSVWSSSHAC 299

BLAST of CsGy5G030560 vs. TAIR10
Match: AT5G37560.1 (RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-11
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 0

Query: 14  LAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHECSAGL 66
           LA +  W++C +CK+++E   GC+HI C CG  FCY CG  W+ +H  S  L
Sbjct: 334 LANDQMWRQCSECKHMIELTEGCNHITCRCGYEFCYRCGHKWTKYHHYSCQL 385

BLAST of CsGy5G030560 vs. TAIR10
Match: AT2G21420.1 (IBR domain containing protein)

HSP 1 Score: 62.8 bits (151), Expect = 9.4e-11
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 0

Query: 11  IMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHECSAG 65
           +  LA + KW++C  C NLVE   GC+HI C CG  FCY CG  W+     S G
Sbjct: 336 LKSLANKKKWRQCVQCSNLVELFEGCNHITCRCGFEFCYVCGKEWNQRGCLSPG 389

BLAST of CsGy5G030560 vs. TAIR10
Match: AT3G45580.1 (RING/U-box protein with C6HC-type zinc finger)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-09
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 0

Query: 14  LAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHW 56
           LA +  W++C +CKN++E   GC HI C CG  FCY CG  W
Sbjct: 328 LANQKMWRQCENCKNVIELSEGCMHITCRCGHQFCYKCGAKW 369

BLAST of CsGy5G030560 vs. TAIR10
Match: AT3G53690.1 (RING/U-box superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-09
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 14  LAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPH-HEC 62
           +A++ KWKRCP CK  +E+  GC ++ C CG  FCY CGT    H H C
Sbjct: 267 MAKQKKWKRCPSCKFYIEKSQGCLYMKCRCGLAFCYNCGTPSRDHTHYC 315

BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|Q9US46|ITT1_SCHPO (E3 ubiquitin-protein ligase itt1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=itt1 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 16  EEMKW-----KRCPDCKNLVERIGGCSHIICICGSHFCYTCGTH 55
           E  KW     +RCP C  +VERI GC H+ C+CG+HFC+ CG +
Sbjct: 356 EAEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCFLCGAY 399

BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|F4KGU4|DEAHC_ARATH (ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.7e-06
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0

Query: 21   KRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHECSAGL 66
            K CP CK+ +E+  GC+H+ C CG H C+TC   ++    C A L
Sbjct: 1720 KECPICKSTIEKTDGCNHMKCRCGKHICWTCLDVFTQEEPCYAHL 1764

BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|P0CE10|DEAHB_ARATH (ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0

Query: 21   KRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHECSAGL 66
            K CP CK+ +E+  GC+H+ C CG H C+TC   ++    C A L
Sbjct: 1717 KECPICKSTIEKTDGCNHLQCRCGKHICWTCLDVFTQAEPCYAHL 1761

BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|Q22431|ARI2_CAEEL (Potential E3 ubiquitin-protein ligase ariadne-2 OS=Caenorhabditis elegans OX=6239 GN=T12E12.1 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 21/47 (44.68%), Postives = 27/47 (57.45%), Query Frame = 0

Query: 21  KRCPDCKNLVERIGGCSHIICI-CGSHFCYTCGTHWSPH----HECS 63
           K CP C + +E+ GGC+HI C  C  HFC+ C   W  H    +ECS
Sbjct: 285 KDCPQCHSCIEKAGGCNHIQCTRCRHHFCWMCFGDWKSHGSEYYECS 331

BLAST of CsGy5G030560 vs. Swiss-Prot
Match: sp|Q9LVW9|ARI4_ARATH (Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana OX=3702 GN=ARI4 PE=5 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 5.7e-05
Identity = 19/54 (35.19%), Postives = 28/54 (51.85%), Query Frame = 0

Query: 15  AEEMKW-----KRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHECSA 64
           +E + W     K CP C   +++  GC+H+ C CG HFC+ CG      H  S+
Sbjct: 264 SETVNWMTVNTKLCPKCSKPIQKRDGCNHMTCKCGQHFCWLCGQATGRDHSYSS 317

BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A0A0KUV8|A0A0A0KUV8_CUCSA (RBR-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G650590 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-31
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1   MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHE 60
           MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHE
Sbjct: 49  MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHE 108

Query: 61  C 62
           C
Sbjct: 109 C 109

BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A0A0L952|A0A0A0L952_CUCSA (RBR-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G646570 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 6   KEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHECSA 64
           K+ +  +KLAE  KW+RCP CK  VE+  GC HI+C CGS FCY+CG  W   H C A
Sbjct: 202 KDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDFCYSCGAKWGGGHACKA 259

BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A199W5C8|A0A199W5C8_ANACO (RBR-type E3 ubiquitin transferase OS=Ananas comosus OX=4615 GN=ACMD2_15401 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 1   MERTLKEASGIMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGT--HWSPH 60
           +ER  +E   ++K+A++ KWKRCP CK  VE+ GGC HI C CG HFCY CG   H S H
Sbjct: 131 IEREREEDLLLLKVAKDKKWKRCPSCKYFVEKTGGCLHITCRCGFHFCYGCGMEYHSSQH 190

Query: 61  HECSAGL 66
             C   L
Sbjct: 191 SACGGSL 197

BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A0R0EWZ7|A0A0R0EWZ7_SOYBN (RBR-type E3 ubiquitin transferase OS=Glycine max OX=3847 GN=GLYMA_18G064500 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-11
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0

Query: 14  LAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHEC 62
           LA+E  WK+CP C   V+R GGC HI C CG +FCY CG +W+P H C
Sbjct: 139 LAKEKNWKKCPHCTMFVQRCGGCDHIACRCGCNFCYICGKNWNPEHRC 186

BLAST of CsGy5G030560 vs. TrEMBL
Match: tr|A0A151QLQ8|A0A151QLQ8_CAJCA (RBR-type E3 ubiquitin transferase OS=Cajanus cajan OX=3821 GN=KK1_048617 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.7e-11
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 11  IMKLAEEMKWKRCPDCKNLVERIGGCSHIICICGSHFCYTCGTHWSPHHEC 62
           +M+LA+   W+RC  CK  VE+  GCSHI C CG+HFCY CG+ W+ +H C
Sbjct: 244 VMELAKNKSWRRCSKCKFYVEKADGCSHITCRCGNHFCYACGSSWNSNHAC 294

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52694.14.0e-31100.00hypothetical protein Csa_5G650590 [Cucumis sativus][more]
XP_022956145.17.5e-1462.50probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata][more]
XP_023527456.19.8e-1468.00probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo] >XP_02352... [more]
XP_022980686.18.3e-1360.71probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima][more]
RCW19319.11.2e-1156.86hypothetical protein GLYMA_07G044500 [Glycine max][more]
Match NameE-valueIdentityDescription
AT3G14250.11.7e-1247.06RING/U-box superfamily protein[more]
AT5G37560.13.2e-1144.23RING/U-box superfamily protein[more]
AT2G21420.19.4e-1146.30IBR domain containing protein[more]
AT3G45580.11.0e-0950.00RING/U-box protein with C6HC-type zinc finger[more]
AT3G53690.12.3e-0948.98RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q9US46|ITT1_SCHPO1.2e-0750.00E3 ubiquitin-protein ligase itt1 OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
sp|F4KGU4|DEAHC_ARATH8.7e-0642.22ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
sp|P0CE10|DEAHB_ARATH1.1e-0542.22ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
sp|Q22431|ARI2_CAEEL1.9e-0544.68Potential E3 ubiquitin-protein ligase ariadne-2 OS=Caenorhabditis elegans OX=623... [more]
sp|Q9LVW9|ARI4_ARATH5.7e-0535.19Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana OX=3702 GN=ARI... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KUV8|A0A0A0KUV8_CUCSA2.6e-31100.00RBR-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G650590 PE=... [more]
tr|A0A0A0L952|A0A0A0L952_CUCSA1.8e-1153.45RBR-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G646570 PE=... [more]
tr|A0A199W5C8|A0A199W5C8_ANACO1.8e-1150.75RBR-type E3 ubiquitin transferase OS=Ananas comosus OX=4615 GN=ACMD2_15401 PE=3 ... [more]
tr|A0A0R0EWZ7|A0A0R0EWZ7_SOYBN5.1e-1156.25RBR-type E3 ubiquitin transferase OS=Glycine max OX=3847 GN=GLYMA_18G064500 PE=3... [more]
tr|A0A151QLQ8|A0A151QLQ8_CAJCA6.7e-1152.94RBR-type E3 ubiquitin transferase OS=Cajanus cajan OX=3821 GN=KK1_048617 PE=3 SV... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR031127E3_UB_ligase_RBR
IPR002867IBR_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000151 ubiquitin ligase complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0031624 ubiquitin conjugating enzyme binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0004842 ubiquitin-protein transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G030560.1CsGy5G030560.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.120.1750coord: 2..66
e-value: 6.1E-13
score: 51.1
NoneNo IPR availablePANTHERPTHR11685:SF205RING/U-BOX SUPERFAMILY PROTEINcoord: 6..62
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 13..61
IPR002867IBR domainPFAMPF01485IBRcoord: 14..61
e-value: 3.5E-8
score: 33.4
IPR031127E3 ubiquitin ligase RBR familyPANTHERPTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGcoord: 6..62

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G030560Csa5G650590Cucumber (Chinese Long) v2cgybcuB223
CsGy5G030560CsaV3_5G040290Cucumber (Chinese Long) v3cgybcucB232
The following gene(s) are paralogous to this gene:

None