CsGy5G015750 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G015750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	NACHT, LRR and PYD domains-containing protein 4A
Location	Chr5 : 21985769 .. 21988624 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTTGCACTTCTTGACATTGGTAACAACTCAATCACTGCCAAAGGTGCCTTTCATGTTGCCGAATTCGTTAAGAGAACTAAGAGCTTGGTTTTGTTGAATTTGTACATGAATGATATCGGTGATGAGGTAACAGGCGTAACTTCTAAAATTGCTCCTAGAATTGAATTTCTTACAAGCTTTAAGTATTCTGTTAAGTTGTTGAACACAAAGCAAAAAAGTATTTCTAACACTCCCCCTCAACTTGCTAACACAAGAATCAAAGCTCTGTCTAAGAATCTCCTTCGTGAGAATATCAACGATCTATTGGCTTGAGGGTATGTAAGGAATGCAAATGCTACCATTGTCCAGTAAAGAACTCTATGATGCCCCTCTCAATTTCGCTATAACAAAGAAGAGACAAGACCAGTAGTTGAAGCTCAGATATTAAAAGTTCTCTTTCTCACAGCAAGAAATCTGTAAACGAACTCGGCTTTCATACACTTCTTAGATTACGTTTCTGAATTAAATTCCTTCTCTGTTCGATAAGGGCTCAGAAGCTCATCTTTGGCTGAAGAATGCAGACTAACTTCACAAGGAGAAAGTGGTCTTTTCTTAGCCTTTACATCTATTGCTGCACTTTCTGCCATTTAGACTTTTTTCCTCGGCATTTCTCTTTATTTCAAAATCAACAAGCCAAGCTTTGATTTCTGTCTTTAGATCTCTAAGTTTTGAAGTAATAACATATGCAGGCCAACCCTCCAATGAATCTTGAGTCAAAGATTGCTCAACAATGCAGCTACATCTGAAAGCTTCAACCAACTATTGTAATACCAAAATGGAGAAGGATCCCAATTATAACTTTTGGCCTCGAGCAGTAAAGGGTAATGATATTAAAAGTCACAAATTTTCCTTGATACCCTTTAGTTTTCGAACAGTGAAGGCCATTATCTGGAACAAAAAACCTATCAATTAGAGAATTTGAGGAATTGTCACTCAGTTTAGACCATGTAAATTTGCCATTGGACAAACGAAGTCAATTCCATAAGCTCAAGTTCATCAATCAGATTATTGAATATTCTTTTTCTTCTTGGAAGTCTCTGATGTTACCATCAAGTGATATTAAAATTTTCCCCAATGCACCAAGGATCTTCAACATAAAGATACAACGATTATGACCCTAGTCTCTACCCATAGAAAATTTCGCGCTTTAGTCATTTAGCCTATAAATATTAGAGATCTAGCATGATTTATTTTGCCAAAAAGAAGCTTTAACAAAGAGTAAGTTCCTGAATTTTCAACTTTTCTTCTCCGCATAATTGATAATCCCGCAGATTTTCCCAAGATTCAACATTCACCCAACTAATCTCTGGAGCTCCAAATTGTCTTCACTCTTTACCAATCGGCTATCAAAAGTTGATGCTTTTGTTTCCTGAGTTAATACCAAATTTAGATTGTTATGCTGAAATGAATTTCTTTGAAGCCGCTCTTTTGGAAACATCTCTAACCCCATGACCATTCCATATGTTGATCTTCACTGGAAACTAAGTGCCAAGTACAAAAAAAGAAACTAAAACTGTAATTATTTTAATTCTATTATGTGAGAACACAAGAAATTATTGAGATTGAGCAAAAAGAAAATGCTAGATTTTTAGTGTGCAAAAGTTAAGGAATTGAAACTATAATTGAAGTGTACATGTACATATATGCGGATGTATATTCTGCAGGGCATTAAATTATTTACAAACTTCCATTTTGTTCTCCAGGGTGCTGAAAAGATTGCTGATTCTCTAAAGCAAAATCGGACAATAAAAACTTTAGATCTGGTGAGGAGCCATGATTCTTTTTATTTTCTCTTCCCCGACTACAAATATAAGTTGGACAACACTTTTTTGGTGGGTTAATTTACAGGGAGGGAATAACATACATGGTGAGGGTATTAGCAAGGTCGCTCAAGCATTGAAGGATAACGATACCATCACAACTGTGAGCTATCTAGCATTTGAGATTGCTCAACTTTTATCACGTTTTGACATGAACAAATTTATCCTTATCTGTGATCACACCCACAAACACAGTTGGAAATTTCTTATAATCCCATTGGACCAGAAGGAGCGGAGGCTTTATCTGAGGTGCTGAAGTTCCATGGAAATGTAAAAAATCTCAAGCTTGGTTGGTGTAAGGTAAAGGATGTGACTGTTTGGCTCTATATGCCTTAAATATGCCTCTTTTAATTTCTTGCAAAAATGGTTTGCAGATAGGACCAAAGGGTGCTGAATTTATTGCAGAAACTCTGAAATATAATACTACAATATCTGTCTTGGATTTACGGGGCAATGGTCTACGGGACGAGGTTTGCATCCGTCATTGTAGTCTCATTACTCTTAGTCATTAATAGGCATTGAAGCATACTCATCTAATAGTAGAATATCTTTCCTTTTCCCACCATTTAATTTCAGGGTGCAACTTGCCTTGCTCGCAGCTTGAAAGTGGTCAACGAAGCTTTAACTTCACTAGATTTAGGTTTCAATGAAATAAGGGTACATGTTTCACCTTTATCTGTGTCCTATCCGGTCATCGATGGTCCACATTCACATTGTTTTACTTAAGTTATAATTTGGGAATATACAGGATCCAGGTGCTTTCGCCATTGCTCAAGCACTCAAAGCGAACGGGGACATAGCAGTTACATCCTTGAATCTCGCCAATAACTTCCTGACCAAATTCGGGCAGGTTGTATGATCTGATCACCCTCTCTTCTTCTTCCTCACCTCATAATGATGATTTTGTCTTATTGAGGGTTTTTCATTTTTTGTGATCTCATTGCAGAGTGCTTTAACAGATGCCAGAGATCATGTCCATGAGATGTGTGAAAGG

mRNA sequence

AAACTTGCACTTCTTGACATTGGTAACAACTCAATCACTGCCAAAGGTGCCTTTCATGTTGCCGAATTCGTTAAGAGAACTAAGAGCTTGGTTTTGTTGAATTTGTACATGAATGATATCGGTGATGAGGGTGCTGAAAAGATTGCTGATTCTCTAAAGCAAAATCGGACAATAAAAACTTTAGATCTGGTGAGGAGCCATGATTCTTTTTATTTTCTCTTCCCCGACTACAAATATAAGTTGGACAACACTTTTTTGGGAGGGAATAACATACATGGTGAGGGTATTAGCAAGGTCGCTCAAGCATTGAAGGATAACGATACCATCACAACTTTGGAAATTTCTTATAATCCCATTGGACCAGAAGGAGCGGAGGCTTTATCTGAGGTGCTGAAGTTCCATGGAAATGTAAAAAATCTCAAGCTTGGTTGGTGTAAGATAGGACCAAAGGGTGCTGAATTTATTGCAGAAACTCTGAAATATAATACTACAATATCTGTCTTGGATTTACGGGGCAATGGTCTACGGGACGAGGGTGCAACTTGCCTTGCTCGCAGCTTGAAAGTGGTCAACGAAGCTTTAACTTCACTAGATTTAGGTTTCAATGAAATAAGGGATCCAGGTGCTTTCGCCATTGCTCAAGCACTCAAAGCGAACGGGGACATAGCAGTTACATCCTTGAATCTCGCCAATAACTTCCTGACCAAATTCGGGCAGAGTGCTTTAACAGATGCCAGAGATCATGTCCATGAGATGTGTGAAAGG

Coding sequence (CDS)

AAACTTGCACTTCTTGACATTGGTAACAACTCAATCACTGCCAAAGGTGCCTTTCATGTTGCCGAATTCGTTAAGAGAACTAAGAGCTTGGTTTTGTTGAATTTGTACATGAATGATATCGGTGATGAGGGTGCTGAAAAGATTGCTGATTCTCTAAAGCAAAATCGGACAATAAAAACTTTAGATCTGGTGAGGAGCCATGATTCTTTTTATTTTCTCTTCCCCGACTACAAATATAAGTTGGACAACACTTTTTTGGGAGGGAATAACATACATGGTGAGGGTATTAGCAAGGTCGCTCAAGCATTGAAGGATAACGATACCATCACAACTTTGGAAATTTCTTATAATCCCATTGGACCAGAAGGAGCGGAGGCTTTATCTGAGGTGCTGAAGTTCCATGGAAATGTAAAAAATCTCAAGCTTGGTTGGTGTAAGATAGGACCAAAGGGTGCTGAATTTATTGCAGAAACTCTGAAATATAATACTACAATATCTGTCTTGGATTTACGGGGCAATGGTCTACGGGACGAGGGTGCAACTTGCCTTGCTCGCAGCTTGAAAGTGGTCAACGAAGCTTTAACTTCACTAGATTTAGGTTTCAATGAAATAAGGGATCCAGGTGCTTTCGCCATTGCTCAAGCACTCAAAGCGAACGGGGACATAGCAGTTACATCCTTGAATCTCGCCAATAACTTCCTGACCAAATTCGGGCAGAGTGCTTTAACAGATGCCAGAGATCATGTCCATGAGATGTGTGAAAGG

Protein sequence

KLALLDIGNNSITAKGAFHVAEFVKRTKSLVLLNLYMNDIGDEGAEKIADSLKQNRTIKTLDLVRSHDSFYFLFPDYKYKLDNTFLGGNNIHGEGISKVAQALKDNDTITTLEISYNPIGPEGAEALSEVLKFHGNVKNLKLGWCKIGPKGAEFIAETLKYNTTISVLDLRGNGLRDEGATCLARSLKVVNEALTSLDLGFNEIRDPGAFAIAQALKANGDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER

Homology

[Close]

BLAST of CsGy5G015750 vs. NCBI nr
Match: KGN51146.1 (hypothetical protein Csa_5G467900 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 220 GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER
Sbjct: 243 GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 278

HSP 2 Score: 50.4 bits (119), Expect = 1.0e-02
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1  KLALLDIGNNSITAKGAFHVAEFV 25
          KLALLDIGNNSITAKGAFHVAEFV
Sbjct: 47 KLALLDIGNNSITAKGAFHVAEFV 70

[Close]

BLAST of CsGy5G015750 vs. NCBI nr
Match: XP_004143770.2 (PREDICTED: protein NLRC3 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 220 GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER
Sbjct: 564 GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 599

[Close]

BLAST of CsGy5G015750 vs. NCBI nr
Match: XP_008465766.1 (PREDICTED: protein NLRC3 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 221 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCE+
Sbjct: 565 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCEK 599

[Close]

BLAST of CsGy5G015750 vs. NCBI nr
Match: XP_022157371.1 (NLR family CARD domain-containing protein 3 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 221 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCE+
Sbjct: 564 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCEK 598

[Close]

BLAST of CsGy5G015750 vs. NCBI nr
Match: XP_022946525.1 (NLR family CARD domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 221 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCE+
Sbjct: 571 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCEK 605

[Close]

BLAST of CsGy5G015750 vs. TAIR10
Match: AT1G10510.1 (RNI-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 221 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           D+ VTS+NL NNF+TKFGQSALTDARDHV EM E+
Sbjct: 565 DVTVTSINLGNNFITKFGQSALTDARDHVLEMTEK 599

[Close]

BLAST of CsGy5G015750 vs. TrEMBL
Match: tr|A0A0A0KTU5|A0A0A0KTU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G467900 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.8e-11
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 220 GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER
Sbjct: 243 GDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 278

HSP 2 Score: 50.4 bits (119), Expect = 6.7e-03
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1  KLALLDIGNNSITAKGAFHVAEFV 25
          KLALLDIGNNSITAKGAFHVAEFV
Sbjct: 47 KLALLDIGNNSITAKGAFHVAEFV 70

[Close]

BLAST of CsGy5G015750 vs. TrEMBL
Match: tr|A0A1S3CPM9|A0A1S3CPM9_CUCME (protein NLRC3 OS=Cucumis melo OX=3656 GN=LOC103503368 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.4e-10
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 221 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCE+
Sbjct: 565 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCEK 599

[Close]

BLAST of CsGy5G015750 vs. TrEMBL
Match: tr|A0A2N9EC67|A0A2N9EC67_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS112 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 221 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           D+AVTSLNLANNFLTKFGQSALTDARDHV+EM E+
Sbjct: 560 DVAVTSLNLANNFLTKFGQSALTDARDHVYEMSEK 594

[Close]

BLAST of CsGy5G015750 vs. TrEMBL
Match: tr|A0A2P4J019|A0A2P4J019_QUESU (Isoform 2 of protein nlrc3 OS=Quercus suber OX=58331 GN=CFP56_67876 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 221 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           D+AVTSLNLANNFLTKFGQSALTDARDHV+EM E+
Sbjct: 575 DVAVTSLNLANNFLTKFGQSALTDARDHVYEMSEK 609

[Close]

BLAST of CsGy5G015750 vs. TrEMBL
Match: tr|A0A2I4EYD2|A0A2I4EYD2_9ROSI (protein NLRC3 OS=Juglans regia OX=51240 GN=LOC108993823 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-07
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 221 DIAVTSLNLANNFLTKFGQSALTDARDHVHEMCER 256
           D+ VTSLNLANNFLTKFGQSALTDARDHV+EM E+
Sbjct: 577 DVTVTSLNLANNFLTKFGQSALTDARDHVYEMSEK 611

The following BLAST results are available for this feature:

BLAST of CsGy5G015750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51146.1	1.3e-10	100.00	hypothetical protein Csa_5G467900 [Cucumis sativus]	[more]
XP_004143770.2	1.3e-10	100.00	PREDICTED: protein NLRC3 [Cucumis sativus]	[more]
XP_008465766.1	1.1e-09	97.14	PREDICTED: protein NLRC3 [Cucumis melo]	[more]
XP_022157371.1	1.1e-09	97.14	NLR family CARD domain-containing protein 3 [Momordica charantia]	[more]
XP_022946525.1	1.1e-09	97.14	NLR family CARD domain-containing protein 3 [Cucurbita moschata]	[more]

BLAST of CsGy5G015750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10510.1	1.8e-09	77.14	RNI-like superfamily protein	[more]

BLAST of CsGy5G015750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G015750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTU5\|A0A0A0KTU5_CUCSA	8.8e-11	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G467900 PE=4 SV=1	[more]
tr\|A0A1S3CPM9\|A0A1S3CPM9_CUCME	7.4e-10	97.14	protein NLRC3 OS=Cucumis melo OX=3656 GN=LOC103503368 PE=4 SV=1	[more]
tr\|A0A2N9EC67\|A0A2N9EC67_FAGSY	6.9e-08	88.57	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS112 PE=4 SV=1	[more]
tr\|A0A2P4J019\|A0A2P4J019_QUESU	6.9e-08	88.57	Isoform 2 of protein nlrc3 OS=Quercus suber OX=58331 GN=CFP56_67876 PE=4 SV=1	[more]
tr\|A0A2I4EYD2\|A0A2I4EYD2_9ROSI	2.0e-07	85.71	protein NLRC3 OS=Juglans regia OX=51240 GN=LOC108993823 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G015750.1	CsGy5G015750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 78..105 e-value: 51.0 score: 5.1 coord: 162..189 e-value: 0.0037 score: 26.5 coord: 134..161 e-value: 4.7 score: 12.4 coord: 27..54 e-value: 0.0025 score: 27.1 coord: 191..218 e-value: 0.076 score: 22.1 coord: 106..133 e-value: 9.1E-4 score: 28.5 coord: 1..26 e-value: 54.0 score: 4.9
None	No IPR available	PANTHER	PTHR44483	FAMILY NOT NAMED	coord: 86..245 coord: 2..65
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 2..247
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 137..156 e-value: 0.1 score: 12.6 coord: 107..128 e-value: 6.6E-5 score: 22.6 coord: 161..184 e-value: 7.0E-5 score: 22.5 coord: 194..213 e-value: 2.0E-4 score: 21.0 coord: 30..49 e-value: 0.0045 score: 16.9
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 79..155 e-value: 9.0E-17 score: 63.0
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 1..70 e-value: 1.1E-15 score: 59.5 coord: 156..254 e-value: 1.2E-21 score: 79.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G015750	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G015750	Watermelon (97103) v2	cgybwmbB388
CsGy5G015750	Wax gourd	cgybwgoB449
CsGy5G015750	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G015750	Melon (DHL92) v3.5.1	cgybmeB300
CsGy5G015750	Melon (DHL92) v3.6.1	cgybmedB300
CsGy5G015750	Wild cucumber (PI 183967)	cgybcpiB225