CsGy3G034810 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G034810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	MYB transcription factor
Location	Chr3 : 33448053 .. 33449368 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCTTCACCGGAGGAATCTCGACGGAAAATGAGCGGTGAGAATTCTATAGCCGCCGCCACGCAGCAGCAGCAGCAGCCGAAAGCAGAGCCAGACGGCGGGGAGTTGGTTTCTGGTGAAGAATTTGATTCGATTTTGTCGTTTGAGAATATGAAGAGTGTGAATTCGTGGGGGAAATCGAGTTTGAGTTATAAGGGTAAAGAGGAAGTTAATGTTGGAGAGAAACAGAGTTCGGAGAACGATGACGCTACGGCGGAGAATGCGACGGCGCCGCCGCTATCGTTTCTTGAGAAGTGGCTGTTTGAAGAAGGCGCCGCGGGGCAAGTGGAAGAGATGATGGAGTTGTCGCCGGTGTTCTAGCCAAAAAAAAAAGAAAGAAAAAAAAGAAAGAAAATTAAAATTAAAATTGTAATTTTTATTTTTGTTTGTTTGCTGTTGTAATAATCCAAAAGAACAATTATTTGAAAAGAACAAGAAATTACCATTTCAACATCTTTGGAAGTTAAAAAAAATTTACATCTATTTTTTTCTTATTCTACATTTTATTAAAGCGCAATGAAACCTTACATTCAAATTCTATTAATGAAAACCACTCTTAATTTAAGAAAATTGTCAAAAATATACAAAATACTCACATATATTATTAATAGTTTTTCTTTTTTTGGTCAATTTATGATAGAAAATCAAGGTGTTTCTTATTGTAGTTCTAAAACTATAGCACAATATTTATGTTCATACAACATGTTCATCTAATTTGAAGAGATAATCTTTATATCTTAAAGAATCAAGTAATTAATTAACTTATTATTATTATTGTTAATCTAAATTTTATTCAATAGACGATAATACAATAATTATCATCTAAAAAACTATTGGTTAGATTCTTCAAATAAAGAGAAAAACAAAATAGGACAATTACATATTTTGAAAATAGTATTTGTAATTTGTAATTTTTAATCTAACAGCTTCAATTTTCGAAAATATTATTATTTTTAAAACTTGTACCTTGTAGAAGAAATATTTGTTTTGTCACTATTAATTTTGATCTAAATTCTGGAAAAGTTTTGAAAGTAAAATTCAATAAATAAAGTGAAATGTGGAAGATTTATTTATTTATTTATTAGTATTAGTATTATTATCTTAGAACATAGGATGGCATTGTGCAATTTCAACCATATAATATCTCGAAGTGTCATATCAAACTTTTCGGTGATGTCATGTCAATTTTTATTCCAATTTAATGGGATAATTAATATTCAATGCTTTTTTTTTCTTTTTCTTTTTTTAAAAAATAGGACTTTGGGCTAAAATGA

mRNA sequence

ATGAGATCTTCACCGGAGGAATCTCGACGGAAAATGAGCGGTGAGAATTCTATAGCCGCCGCCACGCAGCAGCAGCAGCAGCCGAAAGCAGAGCCAGACGGCGGGGAGTTGGTTTCTGGTGAAGAATTTGATTCGATTTTGTCGTTTGAGAATATGAAGAGTGTGAATTCGTGGGGGAAATCGAGTTTGAGTTATAAGGGTAAAGAGGAAGTTAATGTTGGAGAGAAACAGAGTTCGGAGAACGATGACGCTACGGCGGAGAATGCGACGGCGCCGCCGCTATCGTTTCTTGAGAAGTGGCTGTTTGAAGAAGGCGCCGCGGGGCAAGTGGAAGAGATGATGGAGTTAATCAAAAGAAATATTTGTTTTGTCACTATTAATTTTGATCTAAATTCTGGAAAAGTTTTGAAAGACTTTGGGCTAAAATGA

Coding sequence (CDS)

ATGAGATCTTCACCGGAGGAATCTCGACGGAAAATGAGCGGTGAGAATTCTATAGCCGCCGCCACGCAGCAGCAGCAGCAGCCGAAAGCAGAGCCAGACGGCGGGGAGTTGGTTTCTGGTGAAGAATTTGATTCGATTTTGTCGTTTGAGAATATGAAGAGTGTGAATTCGTGGGGGAAATCGAGTTTGAGTTATAAGGGTAAAGAGGAAGTTAATGTTGGAGAGAAACAGAGTTCGGAGAACGATGACGCTACGGCGGAGAATGCGACGGCGCCGCCGCTATCGTTTCTTGAGAAGTGGCTGTTTGAAGAAGGCGCCGCGGGGCAAGTGGAAGAGATGATGGAGTTAATCAAAAGAAATATTTGTTTTGTCACTATTAATTTTGATCTAAATTCTGGAAAAGTTTTGAAAGACTTTGGGCTAAAATGA

Protein sequence

MRSSPEESRRKMSGENSIAAATQQQQQPKAEPDGGELVSGEEFDSILSFENMKSVNSWGKSSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMELIKRNICFVTINFDLNSGKVLKDFGLK

Homology

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BLAST of CsGy3G034810 vs. NCBI nr
Match: NP_001267555.1 (myb-related protein 306-like [Cucumis sativus] >ABC33923.1 MYB transcription factor [Cucumis sativus] >KGN59390.1 MYB transcription factor [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 4.0e-41
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MRSSPEESRXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 60
           MRSSPE   XXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK
Sbjct: 175 MRSSPEXXXXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 234

Query: 61  SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 117
           SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL
Sbjct: 235 SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 290

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BLAST of CsGy3G034810 vs. NCBI nr
Match: XP_008443185.1 (PREDICTED: myb-related protein 306-like [Cucumis melo] >ADN33980.1 MYB transcription factor [Cucumis melo subsp. melo])

HSP 1 Score: 169.5 bits (428), Expect = 8.4e-39
Identity = 92/116 (79.31%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   MRSSPEESRXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 60
           MRSSPEESR                   KAEPDG ELVSGEEFDSILSFEN+KSVNSWGK
Sbjct: 176 MRSSPEESR-RKIGGENSIAPATQQQQPKAEPDGRELVSGEEFDSILSFENLKSVNSWGK 235

Query: 61  SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 117
           SSLSYKGKEEVNVGEKQ SEND+ATA NATAPPLSFLEKWLFEEGAAGQVEEMMEL
Sbjct: 236 SSLSYKGKEEVNVGEKQRSENDEATAANATAPPLSFLEKWLFEEGAAGQVEEMMEL 290

[Close]

BLAST of CsGy3G034810 vs. NCBI nr
Match: XP_022152039.1 (myb-related protein 306-like [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 3.1e-25
Identity = 72/116 (62.07%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MRSSPEESRXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 60
           MR+S  ESR                   K EPDGGEL+SGEEFDSILSFEN+K+VNSWGK
Sbjct: 187 MRTSAVESRRKIGPGGENSAAGAATQQPKTEPDGGELISGEEFDSILSFENLKNVNSWGK 246

Query: 61  SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 117
           S          NVGEKQ SE+  A A  A APPLSFLEKWLFEEGAAGQVEEMMEL
Sbjct: 247 S--------PENVGEKQRSES--AAAATAVAPPLSFLEKWLFEEGAAGQVEEMMEL 292

[Close]

BLAST of CsGy3G034810 vs. NCBI nr
Match: XP_023539024.1 (myb-related protein 306-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-23
Identity = 73/117 (62.39%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 1   MRSSPEESRXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 60
           MRSSPEESR                   K E DGGELVS EEFDS+LSFEN+K+VNSWGK
Sbjct: 170 MRSSPEESR---RKIGGENSIATARQQLKVEADGGELVSDEEFDSMLSFENLKNVNSWGK 229

Query: 61  SSLSYKGKEEVNVGEKQSSENDDATA-ENATAPPLSFLEKWLFEEGAAGQVEEMMEL 117
           S+ S K +EE NVGEK  SE   +TA       PLSFLEKWLFEEGAAGQVEEMMEL
Sbjct: 230 STTSCKDEEE-NVGEKLRSETAASTAVXXXXXXPLSFLEKWLFEEGAAGQVEEMMEL 282

[Close]

BLAST of CsGy3G034810 vs. NCBI nr
Match: XP_022971224.1 (myb-related protein 306-like [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 71/117 (60.68%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 1   MRSSPEESRXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 60
           MRSSPEESR                   K E DGGELVSGEEFDS+LSFEN+K+VNSWGK
Sbjct: 170 MRSSPEESR---PKIGGENSTATARQQLKVEADGGELVSGEEFDSMLSFENLKNVNSWGK 229

Query: 61  SSLSYKGKEEVNVGEKQSSEN-DDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 117
           S+ S K +EE NVGEK  SE              LSFLEKWLFEEGAAGQVEEMMEL
Sbjct: 230 STTSCKDEEE-NVGEKLRSETXXXXXXXXXXXXXLSFLEKWLFEEGAAGQVEEMMEL 282

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BLAST of CsGy3G034810 vs. TrEMBL
Match: tr|Q0ZPA2|Q0ZPA2_CUCSA (MYB transcription factor OS=Cucumis sativus OX=3659 GN=mybys PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-41
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MRSSPEESRXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 60
           MRSSPE   XXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK
Sbjct: 175 MRSSPEXXXXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 234

Query: 61  SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 117
           SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL
Sbjct: 235 SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 290

[Close]

BLAST of CsGy3G034810 vs. TrEMBL
Match: tr|A0A1S3B7E9|A0A1S3B7E9_CUCME (myb-related protein 306-like OS=Cucumis melo OX=3656 GN=LOC103486845 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.5e-39
Identity = 92/116 (79.31%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   MRSSPEESRXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 60
           MRSSPEESR                   KAEPDG ELVSGEEFDSILSFEN+KSVNSWGK
Sbjct: 176 MRSSPEESR-RKIGGENSIAPATQQQQPKAEPDGRELVSGEEFDSILSFENLKSVNSWGK 235

Query: 61  SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 117
           SSLSYKGKEEVNVGEKQ SEND+ATA NATAPPLSFLEKWLFEEGAAGQVEEMMEL
Sbjct: 236 SSLSYKGKEEVNVGEKQRSENDEATAANATAPPLSFLEKWLFEEGAAGQVEEMMEL 290

[Close]

BLAST of CsGy3G034810 vs. TrEMBL
Match: tr|E5GBY1|E5GBY1_CUCME (MYB transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.5e-39
Identity = 92/116 (79.31%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   MRSSPEESRXXXXXXXXXXXXXXXXXXXKAEPDGGELVSGEEFDSILSFENMKSVNSWGK 60
           MRSSPEESR                   KAEPDG ELVSGEEFDSILSFEN+KSVNSWGK
Sbjct: 176 MRSSPEESR-RKIGGENSIAPATQQQQPKAEPDGRELVSGEEFDSILSFENLKSVNSWGK 235

Query: 61  SSLSYKGKEEVNVGEKQSSENDDATAENATAPPLSFLEKWLFEEGAAGQVEEMMEL 117
           SSLSYKGKEEVNVGEKQ SEND+ATA NATAPPLSFLEKWLFEEGAAGQVEEMMEL
Sbjct: 236 SSLSYKGKEEVNVGEKQRSENDEATAANATAPPLSFLEKWLFEEGAAGQVEEMMEL 290

[Close]

BLAST of CsGy3G034810 vs. TrEMBL
Match: tr|A0A1J7FN27|A0A1J7FN27_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_23715 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 34  GGELVSGEEFDSILSFENMKSVNSWGKSSLSYKGKEEVNVGEKQSSENDDATAENATAPP 93
           GG++VS EEFDSILSFEN+ +   W KS+     ++   VG  +  E +  T+EN+ APP
Sbjct: 244 GGDMVSHEEFDSILSFENLNNA-PWDKSTCDSMPEKGYVVG-AEFGEKNRLTSENSNAPP 303

Query: 94  LSFLEKWLFEEGAAGQVEEMMEL 117
           LSFLEKWL +E   G V+EMMEL
Sbjct: 304 LSFLEKWLLDEN-VGHVDEMMEL 323

[Close]

BLAST of CsGy3G034810 vs. TrEMBL
Match: tr|E5RT48|E5RT48_LUPAL (R2R3-MYB transcription factor (Fragment) OS=Lupinus albus OX=3870 GN=LaMYB4 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 34  GGELVSGEEFDSILSFENMKSVNSWGKSSLSYKGKEEVNVGEKQSSENDDATAENATAPP 93
           GG++VS EEFDSILSFEN+ +   W KS+     ++   VG  +  E +  T+EN  APP
Sbjct: 200 GGDMVSHEEFDSILSFENLNNA-PWDKSTCDSMPEKGYVVG-AEFGEKNRLTSENTNAPP 259

Query: 94  LSFLEKWLFEEGAAGQVEEMMEL 117
           LSFLEKWL +E   G V++MMEL
Sbjct: 260 LSFLEKWLLDEN-VGHVDDMMEL 279

The following BLAST results are available for this feature:

BLAST of CsGy3G034810 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001267555.1	4.0e-41	97.41	myb-related protein 306-like [Cucumis sativus] >ABC33923.1 MYB transcription fac...	[more]
XP_008443185.1	8.4e-39	79.31	PREDICTED: myb-related protein 306-like [Cucumis melo] >ADN33980.1 MYB transcrip...	[more]
XP_022152039.1	3.1e-25	62.07	myb-related protein 306-like [Momordica charantia]	[more]
XP_023539024.1	2.2e-23	62.39	myb-related protein 306-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971224.1	5.4e-22	60.68	myb-related protein 306-like [Cucurbita maxima]	[more]

BLAST of CsGy3G034810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G034810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G034810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q0ZPA2\|Q0ZPA2_CUCSA	2.7e-41	97.41	MYB transcription factor OS=Cucumis sativus OX=3659 GN=mybys PE=2 SV=1	[more]
tr\|A0A1S3B7E9\|A0A1S3B7E9_CUCME	5.5e-39	79.31	myb-related protein 306-like OS=Cucumis melo OX=3656 GN=LOC103486845 PE=4 SV=1	[more]
tr\|E5GBY1\|E5GBY1_CUCME	5.5e-39	79.31	MYB transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1J7FN27\|A0A1J7FN27_LUPAN	5.4e-10	51.81	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_23715 PE=4 S...	[more]
tr\|E5RT48\|E5RT48_LUPAL	1.6e-09	50.60	R2R3-MYB transcription factor (Fragment) OS=Lupinus albus OX=3870 GN=LaMYB4 PE=2...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G034810.1	CsGy3G034810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G034810	Cla017463	Watermelon (97103) v1	cgybwmB187
CsGy3G034810	Csa3G816030	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G034810	MELO3C009708	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G034810	ClCG10G016670	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G034810	CSPI03G37320	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G034810	Lsi03G016580	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G034810	MELO3C009708.2	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G034810	CsaV3_3G039670	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G034810	Cla97C10G199550	Watermelon (97103) v2	cgybwmbB178
CsGy3G034810	Bhi11G002278	Wax gourd	cgybwgoB214
CsGy3G034810	Carg03518	Silver-seed gourd	carcgybB0263
CsGy3G034810	Carg01270	Silver-seed gourd	carcgybB0167

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G034810	Cucurbita maxima (Rimu)	cgybcmaB306
CsGy3G034810	Cucurbita maxima (Rimu)	cgybcmaB439
CsGy3G034810	Cucurbita moschata (Rifu)	cgybcmoB279
CsGy3G034810	Cucurbita moschata (Rifu)	cgybcmoB410
CsGy3G034810	Cucurbita pepo (Zucchini)	cgybcpeB395
CsGy3G034810	Cucurbita pepo (Zucchini)	cgybcpeB408
CsGy3G034810	Cucurbita pepo (Zucchini)	cgybcpeB457