CsGy3G028230 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G028230
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionribosome biogenesis protein BRX1-like
LocationChr3 : 29261947 .. 29263077 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTAACAATCCTGTTTAGAACGTGTCTTTGAAGTTAGGTTGCTTCACTCCTCTCTTCATCCTTTACAGATTCCTTTAATCTATGTTTCTTAATTTAAGTGTAGTATTTCTGAAGGTGATATTCTCAAATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATGTAATATAGTTGAAACAAGTTGTTGTAGCTTTTTGTAAAATATATTGTTATGTCTATACATGGTTAGGTAGTTTGCAGTATAACTTATCACTCAGTAACCAAATGTTTTTTGTTTTTATTTATTTAGTTTTTCTTCCCTTTAGAATTTTTGGCAATTTAACTTGTGATTGATTAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCGAGGTCCAGCAAGGGTACAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGGTTAGAACCTTTTCATTGCACTGTCGTAATCTGGAATTTTTAAGGTACAATGTTTTCTAATTTTTATTTTTAATTAGATATAGGATGATAACATTTTGGTTTTATTCTTGTGGTGTATAACTTATAAGGATGTTTTAACTATCCTTTTGCTTTTCATTATATTACTTTCCTATATGGCCTTCTCATCATGTTTGTACATTGCGATCATATTTTTCCACTCATTGATATTTTTTCTCTAATTCCAGTGCATAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCAGTAATTTTAACTTGTATTCAAATTTTATTACTGGGTTACTAAAATTTTATTTGATTTCTTTATTAAATGAAGTTTTCTTACTTGTCCATTTTTTTTTGCTTTCAGTGCATACAATGGAAGAATTGAAGCTTACAGGGAACCATCTGAAAGGTTCC

mRNA sequence

AAGTAACAATCCTGTTTAGAACGTGTCTTTGAAGTTAGGTTGCTTCACTCCTCTCTTCATCCTTTACAGATTCCTTTAATCTATGTTTCTTAATTTAAGTGTAGTATTTCTGAAGGTGATATTCTCAAATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCGAGGTCCAGCAAGGGTACAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGTGCATAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATGCATACAATGGAAGAATTGAAGCTTACAGGGAACCATCTGAAAGGTTCC

Coding sequence (CDS)

ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCGAGGTCCAGCAAGGGTACAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGTGCATAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATGCATACAATGGAAGAATTGAAGCTTACAGGGAACCATCTGAAAGGTTCC

Protein sequence

MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHKDLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS
Homology
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BLAST of CsGy3G028230 vs. NCBI nr
Match: XP_011659901.1 (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 1.7e-80
Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKE EVGSDHAVFRNKEKVLIT
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RSSKG TLNELVELKGCSSSLFFEC KHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 158

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BLAST of CsGy3G028230 vs. NCBI nr
Match: XP_008450669.1 (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450671.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 295.4 bits (755), Expect = 1.1e-76
Identity = 145/158 (91.77%), Postives = 153/158 (96.84%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVFRNKEKVL+T
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKG TLNELVELKGCSSSLFFEC KHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLYL MAKCPSGPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGS 158

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BLAST of CsGy3G028230 vs. NCBI nr
Match: XP_022159792.1 (ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia])

HSP 1 Score: 293.9 bits (751), Expect = 3.3e-76
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           MAKKRKHSE+L +V+VKKD DAPERPKRTLMGWKDK+V KESE GSDHAVFRNKEKVL+T
Sbjct: 1   MAKKRKHSEALASVAVKKDSDAPERPKRTLMGWKDKEVGKESESGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKG TLNELVELKGCSSSLFFEC KHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLYL MAKCPSGPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGS 158

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BLAST of CsGy3G028230 vs. NCBI nr
Match: XP_022930733.1 (ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita moschata] >XP_022930743.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita moschata])

HSP 1 Score: 286.2 bits (731), Expect = 6.8e-74
Identity = 140/158 (88.61%), Postives = 148/158 (93.67%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M KKRKHSE+LP VSVKKD+ APERPKRTL GWKDK+V KE+E GSDHAVFRNKEKVL+T
Sbjct: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETESGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRINFRYRHLMLN+VSLLPHCKKDNKVESRSSKG TLNELVELKGCSS LFFEC KHK
Sbjct: 61  CSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSCLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLYL M+KCPSGPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 DLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGS 158

[Close]
BLAST of CsGy3G028230 vs. NCBI nr
Match: XP_022968762.1 (ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima] >XP_022968763.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima] >XP_022968764.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima])

HSP 1 Score: 284.6 bits (727), Expect = 2.0e-73
Identity = 141/158 (89.24%), Postives = 147/158 (93.04%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M KKRKHSE+LP VSVKKDD APER KRTL GWKDK+VT +SE  SDHAVFRNKEKVL+T
Sbjct: 1   MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSESDSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRS+KG TLNELVELKGCSSSLFFEC KHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLYL MAKCPSGPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGS 158

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BLAST of CsGy3G028230 vs. TAIR10
Match: AT3G15460.1 (Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 238.0 bits (606), Expect = 3.9e-63
Identity = 118/158 (74.68%), Postives = 134/158 (84.81%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M +KRKHSE++    VK  D APERP+RTL+GWKDKK   E+   +  +VFRNKEKVL+T
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRINFRYRHLMLNMVSLLPHCKKD+KVE++SS+G TLNEL+ELKG SS LFFEC KHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLY+ M K P GPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGS 156

[Close]
BLAST of CsGy3G028230 vs. TAIR10
Match: AT1G52930.1 (Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-56
Identity = 109/160 (68.12%), Postives = 129/160 (80.62%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFRNKEKVL 60
           M +KRKHSE+     VKK D+ AP+RPKRTL+GWKDK   + E       + F+NKEKVL
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query: 61  ITCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIK 120
           +TCSRRI+FRYR LMLN+VSLLPHCKKD+KVE++SSKG TLNEL+ELK  +S LFFEC K
Sbjct: 61  VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           HKDLY+ M K P+GPSVKFLV A+H MEE+KLTGNHLKGS
Sbjct: 121 HKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGS 160

[Close]
BLAST of CsGy3G028230 vs. Swiss-Prot
Match: sp|Q9LE16|BRX11_ARATH (Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-1 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 7.0e-62
Identity = 118/158 (74.68%), Postives = 134/158 (84.81%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M +KRKHSE++    VK  D APERP+RTL+GWKDKK   E+   +  +VFRNKEKVL+T
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRINFRYRHLMLNMVSLLPHCKKD+KVE++SS+G TLNEL+ELKG SS LFFEC KHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLY+ M K P GPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGS 156

[Close]
BLAST of CsGy3G028230 vs. Swiss-Prot
Match: sp|Q9C928|BRX12_ARATH (Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-2 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.8e-55
Identity = 109/160 (68.12%), Postives = 129/160 (80.62%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFRNKEKVL 60
           M +KRKHSE+     VKK D+ AP+RPKRTL+GWKDK   + E       + F+NKEKVL
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query: 61  ITCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIK 120
           +TCSRRI+FRYR LMLN+VSLLPHCKKD+KVE++SSKG TLNEL+ELK  +S LFFEC K
Sbjct: 61  VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           HKDLY+ M K P+GPSVKFLV A+H MEE+KLTGNHLKGS
Sbjct: 121 HKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGS 160

[Close]
BLAST of CsGy3G028230 vs. Swiss-Prot
Match: sp|Q4QQT6|BRX1_RAT (Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus OX=10116 GN=Brix1 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-24
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 0 

Query: 34  KDKKVTKESEVGSDH-------AVFRNKEKVLITCSRRINFRYRHLMLNMVSLLPHCKKD 93
           K   V KE+E   D          ++NKE++LI  SR INFR RHLM ++  L+PH K D
Sbjct: 31  KQADVAKEAEEEKDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKAD 90

Query: 94  NKVESRSSKGTTLNELVELKGCSSSLFFECIKHKDLYLCMAKCPSGPSVKFLVNAMHTME 153
            K++ R  K   +NE+ E+K C+  ++FE  K +DLY+ ++  P GPS KFLV  +HT+ 
Sbjct: 91  TKMD-RKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLA 150

Query: 154 ELKLTGNHLKGS 159
           ELK+TGN LKGS
Sbjct: 151 ELKMTGNCLKGS 161

[Close]
BLAST of CsGy3G028230 vs. Swiss-Prot
Match: sp|Q3SZZ0|BRX1_BOVIN (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.5e-24
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 0 

Query: 51  FRNKEKVLITCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSS 110
           ++NKE++LI  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECIKHKDLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
            ++FE  K +DLY+ ++  P GPS KFLV  +HT+ ELK+TGN LKGS
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGS 162

[Close]
BLAST of CsGy3G028230 vs. Swiss-Prot
Match: sp|Q8TDN6|BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens OX=9606 GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 7.5e-24
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 0 

Query: 51  FRNKEKVLITCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSS 110
           ++NKE++LI  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECIKHKDLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
            ++FE  K +DLY+ ++  P GPS KFLV  +HT+ ELK+TGN LKGS
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGS 162

[Close]
BLAST of CsGy3G028230 vs. TrEMBL
Match: tr|A0A1S3BQS3|A0A1S3BQS3_CUCME (ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 7.4e-77
Identity = 145/158 (91.77%), Postives = 153/158 (96.84%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVFRNKEKVL+T
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKG TLNELVELKGCSSSLFFEC KHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLYL MAKCPSGPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGS 158

[Close]
BLAST of CsGy3G028230 vs. TrEMBL
Match: tr|A0A2R6QDV4|A0A2R6QDV4_ACTCH (Ribosome biogenesis protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19485 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.6e-63
Identity = 124/158 (78.48%), Postives = 136/158 (86.08%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M KKRKHSE+  T  VKKD+ AP+RPKRTL+GWKDK   KE    SD   FRNKEKVL+T
Sbjct: 1   MGKKRKHSEAEVTAPVKKDEGAPQRPKRTLLGWKDKVEEKE----SDSTAFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIKHK 120
           CSRRIN+RYRHLM+N+VSLLPHCKKDNKVES+ SKG TLNELVELKGCSS LFFEC K K
Sbjct: 61  CSRRINYRYRHLMMNVVSLLPHCKKDNKVESKESKGATLNELVELKGCSSCLFFECRKQK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           DLYL MAKCP+GPSVKFLVNA+HTMEELKLTGNHL+GS
Sbjct: 121 DLYLWMAKCPNGPSVKFLVNAVHTMEELKLTGNHLQGS 154

[Close]
BLAST of CsGy3G028230 vs. TrEMBL
Match: tr|A0A2P5PVE3|A0A2P5PVE3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22691 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.0e-62
Identity = 123/160 (76.88%), Postives = 141/160 (88.12%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDK-KVTKESEVGSD-HAVFRNKEKVL 60
           M KKRKHSE+      KKDD APERPKR+L GWKDK +V +++E  +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDDAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  ITCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIK 120
           +TCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESR+SKG TLNEL+EL+GCSS+LFFEC K
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRNSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           H+DLYL MA+CP+GPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGS 160

[Close]
BLAST of CsGy3G028230 vs. TrEMBL
Match: tr|A0A1U8HJQ0|A0A1U8HJQ0_GOSHI (ribosome biogenesis protein BRX1-like OS=Gossypium hirsutum OX=3635 GN=LOC107886736 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.0e-62
Identity = 123/160 (76.88%), Postives = 141/160 (88.12%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDK-KVTKESEVGSD-HAVFRNKEKVL 60
           M KKRKHSE+      KKDD APERPKR+L GWKDK +V +++E  +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDDAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  ITCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIK 120
           +TCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESR+SKG TLNEL+EL+GCSS+LFFEC K
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRNSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           H+DLYL MA+CP+GPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGS 160

[Close]
BLAST of CsGy3G028230 vs. TrEMBL
Match: tr|A0A0B0NEE6|A0A0B0NEE6_GOSAR (Ribosome biogenesis BRX1 OS=Gossypium arboreum OX=29729 GN=F383_18642 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.4e-62
Identity = 123/160 (76.88%), Postives = 141/160 (88.12%), Query Frame = 0 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDK-KVTKESEVGSD-HAVFRNKEKVL 60
           M KKRKHSE+      KKD+ APERPKR+L GWKDK +V +++E  +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  ITCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGTTLNELVELKGCSSSLFFECIK 120
           +TCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRSSKG TLNEL+EL+GCSS+LFFEC K
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGS 159
           H+DLYL MA+CP+GPSVKFLVNA+HTMEELKLTGNHLKGS
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGS 160

The following BLAST results are available for this feature:
BLAST of CsGy3G028230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659901.11.7e-8096.84PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis s... [more]
XP_008450669.11.1e-7691.77PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 ... [more]
XP_022159792.13.3e-7691.77ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia][more]
XP_022930733.16.8e-7488.61ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita moschata] >XP_0229307... [more]
XP_022968762.12.0e-7389.24ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima] >XP_022968763... [more]
BLAST of CsGy3G028230 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G15460.13.9e-6374.68Ribosomal RNA processing Brix domain protein[more]
AT1G52930.12.7e-5668.13Ribosomal RNA processing Brix domain protein[more]
BLAST of CsGy3G028230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LE16|BRX11_ARATH7.0e-6274.68Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BR... [more]
sp|Q9C928|BRX12_ARATH4.8e-5568.13Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BR... [more]
sp|Q4QQT6|BRX1_RAT4.4e-2445.45Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus OX=10116 GN=Brix1 ... [more]
sp|Q3SZZ0|BRX1_BOVIN7.5e-2450.00Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=... [more]
sp|Q8TDN6|BRX1_HUMAN7.5e-2450.00Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens OX=9606 GN=BRIX1 PE=1 S... [more]
BLAST of CsGy3G028230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQS3|A0A1S3BQS3_CUCME7.4e-7791.77ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE... [more]
tr|A0A2R6QDV4|A0A2R6QDV4_ACTCH3.6e-6378.48Ribosome biogenesis protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=... [more]
tr|A0A2P5PVE3|A0A2P5PVE3_GOSBA1.0e-6276.88Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22691 PE=4 SV... [more]
tr|A0A1U8HJQ0|A0A1U8HJQ0_GOSHI1.0e-6276.88ribosome biogenesis protein BRX1-like OS=Gossypium hirsutum OX=3635 GN=LOC107886... [more]
tr|A0A0B0NEE6|A0A0B0NEE6_GOSAR1.4e-6276.88Ribosome biogenesis BRX1 OS=Gossypium arboreum OX=29729 GN=F383_18642 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026532BRX1
IPR007109Brix
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G028230.1CsGy3G028230.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007109Brix domainPFAMPF04427Brixcoord: 62..157
e-value: 8.1E-11
score: 42.3
IPR007109Brix domainPROSITEPS50833BRIXcoord: 55..158
score: 16.158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableSUPERFAMILYSSF52954Class II aaRS ABD-relatedcoord: 56..155
IPR026532Ribosome biogenesis protein BRX1PANTHERPTHR13634RIBOSOME BIOGENESIS PROTEIN BRIXcoord: 15..158

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G028230Cucurbita maxima (Rimu)cgybcmaB307
CsGy3G028230Cucurbita moschata (Rifu)cgybcmoB280
CsGy3G028230Cucurbita pepo (Zucchini)cgybcpeB396
CsGy3G028230Cucumber (Chinese Long) v2cgybcuB111
CsGy3G028230Bottle gourd (USVL1VR-Ls)cgyblsiB168
CsGy3G028230Melon (DHL92) v3.5.1cgybmeB172
CsGy3G028230Melon (DHL92) v3.6.1cgybmedB173
CsGy3G028230Watermelon (Charleston Gray)cgybwcgB175
CsGy3G028230Watermelon (97103) v1cgybwmB182
CsGy3G028230Wild cucumber (PI 183967)cgybcpiB110
CsGy3G028230Silver-seed gourdcarcgybB0802
CsGy3G028230Cucumber (Chinese Long) v3cgybcucB117
CsGy3G028230Watermelon (97103) v2cgybwmbB175
CsGy3G028230Wax gourdcgybwgoB212