CsGy3G025320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G025320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	50S ribosomal protein L7/L12
Location	Chr3 : 25807719 .. 25808300 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTGACTGTAGTTGCACAATCCCTTCAAGTCCGTTCCACATTTGCTAAAATAATTGGGTTGTCGCAGGTCCGCTTCTTTCAGCCTGATTTTACTCCTAGAGACCCAAATGCCAAGCCGAAAAAATACAAGTACCCAGCATTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTGAGCTTGCTGAAAGAATTGTAGCACTGCCTGCTGCTGAGCGTTGCCAGATTGGTCCCACACTTGGCGAAAAACTTAGACATCCTAAGCTGCAGGAAATTTCAGTGGATGGCTTGGACATGGGTCCGGAAGGAGGGGCAGCGGCAGGATCTTCCAACGTGGAAGAGAAAAAAGAAAAAACTGCTTTTGACGTGAAGCTAGAGAAGTTTGATGCTGCTTCAAAAATTAAAGTGATTAAAGAAGTAAGGGCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGACTTGGTAGAGAAAGTACCTGCGATTCTCAAGCAAGGGGTGACCAAGGAGGAAGCAAACGGTATCATCGAAAAAATCAAAGCTGCTGGAGGAGTTGCTGTGATGGAGTAA

mRNA sequence

ATGAAGCTGACTGTAGTTGCACAATCCCTTCAAGTCCGTTCCACATTTGCTAAAATAATTGGGTTGTCGCAGGTCCGCTTCTTTCAGCCTGATTTTACTCCTAGAGACCCAAATGCCAAGCCGAAAAAATACAAGTACCCAGCATTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTGAGCTTGCTGAAAGAATTGTAGCACTGCCTGCTGCTGAGCGTTGCCAGATTGGTCCCACACTTGGCGAAAAACTTAGACATCCTAAGCTGCAGGAAATTTCAGTGGATGGCTTGGACATGGGTCCGGAAGGAGGGGCAGCGGCAGGATCTTCCAACGTGGAAGAGAAAAAAGAAAAAACTGCTTTTGACGTGAAGCTAGAGAAGTTTGATGCTGCTTCAAAAATTAAAGTGATTAAAGAAGTAAGGGCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGACTTGGTAGAGAAAGTACCTGCGATTCTCAAGCAAGGGGTGACCAAGGAGGAAGCAAACGGTATCATCGAAAAAATCAAAGCTGCTGGAGGAGTTGCTGTGATGGAGTAA

Coding sequence (CDS)

ATGAAGCTGACTGTAGTTGCACAATCCCTTCAAGTCCGTTCCACATTTGCTAAAATAATTGGGTTGTCGCAGGTCCGCTTCTTTCAGCCTGATTTTACTCCTAGAGACCCAAATGCCAAGCCGAAAAAATACAAGTACCCAGCATTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTGAGCTTGCTGAAAGAATTGTAGCACTGCCTGCTGCTGAGCGTTGCCAGATTGGTCCCACACTTGGCGAAAAACTTAGACATCCTAAGCTGCAGGAAATTTCAGTGGATGGCTTGGACATGGGTCCGGAAGGAGGGGCAGCGGCAGGATCTTCCAACGTGGAAGAGAAAAAAGAAAAAACTGCTTTTGACGTGAAGCTAGAGAAGTTTGATGCTGCTTCAAAAATTAAAGTGATTAAAGAAGTAAGGGCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGACTTGGTAGAGAAAGTACCTGCGATTCTCAAGCAAGGGGTGACCAAGGAGGAAGCAAACGGTATCATCGAAAAAATCAAAGCTGCTGGAGGAGTTGCTGTGATGGAGTAA

Protein sequence

MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPSDKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGIIEKIKAAGGVAVME

Homology

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BLAST of CsGy3G025320 vs. NCBI nr
Match: XP_011651634.1 (PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis sativus] >XP_011651635.1 PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis sativus] >KGN58328.1 hypothetical protein Csa_3G623960 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 2.6e-99
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

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BLAST of CsGy3G025320 vs. NCBI nr
Match: XP_008450561.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_008450569.1 PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_008450588.1 PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_008450597.1 PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_016902379.1 PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo])

HSP 1 Score: 349.0 bits (894), Expect = 1.0e-92
Identity = 183/193 (94.82%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKLTVVA+SLQ RST  KIIGLSQVRFFQPDFTPRDP AKPKKYKYP FYDPYGPRPPPS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII LAERI ALPAAER QIGPTLGEKLRHPKLQEISVDGLDMG EGGAAAGSSNVEEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CsGy3G025320 vs. NCBI nr
Match: XP_023525921.1 (uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.4 bits (825), Expect = 1.0e-84
Identity = 166/193 (86.01%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MK+  VAQSLQ RST  KIIG  QVRFFQPDFTPRDPNAKPKKYKYP FYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGSLQVRFFQPDFTPRDPNAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           +KII+LAERI ALP  ERCQIGPTL E+L+HPKL++ISVDG+DMG  GGAA GSS VEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPTLTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKF+AA+KIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CsGy3G025320 vs. NCBI nr
Match: XP_022949504.1 (uncharacterized protein LOC111452831 [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 165/193 (85.49%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MK+  VAQSLQ RST  KIIGL QVRFFQPDFTPRDPNAKPK+YKYP FYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           +KII+LAERI ALP  ERCQIGP L E+L+HPKL++ISVDG+DMG  GGAA GSS VEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKF+AA+KIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CsGy3G025320 vs. NCBI nr
Match: XP_022998047.1 (uncharacterized protein LOC111492812 [Cucurbita maxima])

HSP 1 Score: 321.2 bits (822), Expect = 2.3e-84
Identity = 164/193 (84.97%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MK+  VAQSLQ RS   KIIGL QVRFFQPDFTPRDPNAKPK+YKYP FYDPYGPRPPPS
Sbjct: 1   MKMITVAQSLQARSALPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           +KII+LAERI ALP  ERCQIGP L E+L+HPKL++ISVDG+D+G EGGAA GSS VEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDLGSEGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKF+AA+KIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CsGy3G025320 vs. TAIR10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 221.1 bits (562), Expect = 6.0e-58
Identity = 127/193 (65.80%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKL  + ++++ R    ++I   QVRF Q D   +   AKPKKYKYP+ YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
            KI+ELAERI AL   ER QIGP L E LR PK Q IS DG+    + GA     NVEEK
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGA----GNVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKF+A+ KIKVIKEVR FT+LGLKEAK+LVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of CsGy3G025320 vs. TAIR10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 109.4 bits (272), Expect = 2.5e-24
Identity = 67/165 (40.61%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 36  DPNAKPKKYKYPAFYDPYGPRPPPSDKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQ 95
           D    P  Y  PA +DP   R PP+D++  L + I +L   E  ++G  + +K    +L 
Sbjct: 45  DQRKLPTDYD-PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELP 104

Query: 96  EISV-------DGLDMGPEGGAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAF 155
            ++V                  +    + E K EKT F++KLE F+A++KIK+IKE+R+F
Sbjct: 105 TVAVMKPGAXXXXXXXXXXXXVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSF 164

Query: 156 TNLGLKEAKDLVEKVPAILKQGVTKEEANGIIEKIKAAGGVAVME 194
           T+LGLKEAK LVEK PAILK G++KEE   I+EK+KA G   V+E
Sbjct: 165 TDLGLKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of CsGy3G025320 vs. TAIR10
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-22
Identity = 66/145 (45.52%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 53  YGPRPPPSDKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEIS--VDGLDMGPEGGA 112
           Y      S+ + ++   +  L   E   +   L +KL   +L  ++  + G+ +   G +
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 113 -AAGSSNVEEKKE-KTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 172
            +AG    E+KKE KTAFDV L+ +DA SKIKVIKEVR  T LGLKEAKDLVEK P +LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 173 QGVTKEEANGIIEKIKAAGGVAVME 194
           +GV+KEEA  IIEK+KA G    ME
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]

BLAST of CsGy3G025320 vs. TAIR10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-22
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 108 GGAAAGSSNVEEK-KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAI 167
           G     S++ E K  EKT FDVKLEKF+AASKIKVIKE+RAFT+LGLKEAK LVEK P I
Sbjct: 81  GSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVI 140

Query: 168 LKQGVTKEEANGIIEKIKAAGGVAVME 194
           +K G+TKEEA  I+EK+KA G +  +E
Sbjct: 141 VKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]

BLAST of CsGy3G025320 vs. TAIR10
Match: AT2G03130.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 109 GAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           G + G +N   K EKT F+VKLE F+A +KIK+IKEVR    +GLKEA  LV K P +LK
Sbjct: 7   GQSGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLK 66

Query: 169 QGVTKEEANGIIEKIKAAGGVAVME 194
            G++KEE   ++EK+ A G  AV++
Sbjct: 67  TGLSKEEGEEVVEKLNALGAEAVLQ 91

[Close]

BLAST of CsGy3G025320 vs. Swiss-Prot
Match: sp|A2C031|RL7_PROM1 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.0e-15
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 109 GAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           GAAAG    +  +EKT F+V LE FDA+SKIKV+KEVR  T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 169 QGVTKEEANGIIEKIKAAGGVAVME 194
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]

BLAST of CsGy3G025320 vs. Swiss-Prot
Match: sp|P41189|RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 110 AAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQ 169
           A+A   +     EKT F+V LE FDA  KI VIKEVRA T LGLKEAKD VE  P  LK 
Sbjct: 42  ASAAGESAAAVAEKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKT 101

Query: 170 GVTKEEANGIIEKIKAAGGVAVM 193
           GV+K+EA  + +K++AAG   ++
Sbjct: 102 GVSKDEAEELKKKLEAAGATIIL 124

[Close]

BLAST of CsGy3G025320 vs. Swiss-Prot
Match: sp|Q46HH2|RL7_PROMT (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=rplL PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-13
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 109 GAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           GA  G    +  +EKT F+V LE F+A+SKIKV+KEVR  T LGL EAK LVE  P  +K
Sbjct: 47  GAXXGGDGADAAEEKTEFEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 169 QGVTKEEANGIIEKIKAAGGVAVME 194
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]

BLAST of CsGy3G025320 vs. Swiss-Prot
Match: sp|B8HVL2|RL7_CYAP4 (50S ribosomal protein L7/L12 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplL PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.6e-13
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 60  SDKIIELAERIVALPAAERC-QIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVE 119
           +D+I+E  + +  L AAE   QI    G     P    +      M P  GAAA +   E
Sbjct: 5   TDEILEKLKTLTLLEAAELVKQIEEAFGVSAAAPAGGMVM-----MAPGAGAAAPA---E 64

Query: 120 EKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANG 179
           E +EKTAFDV L+   A  KI V+K VR  T LGLKEAK++VE  P  +K+G++KE+A  
Sbjct: 65  EVEEKTAFDVVLDDVPADKKIAVLKIVRELTGLGLKEAKEVVESTPKPIKEGISKEDAEA 124

Query: 180 IIEKIKAAGG 189
             ++++ AGG
Sbjct: 125 AKKQLEDAGG 126

[Close]

BLAST of CsGy3G025320 vs. Swiss-Prot
Match: sp|Q9L5W4|RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.5e-13
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 122 EKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGIIE 181
           EKT F+V LE FDA SKI VIKEVR+ T+LGLKEAK+LVE +   L+ GV+K+EAN + +
Sbjct: 53  EKTEFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKK 112

Query: 182 KIKAAG 188
           K++AAG
Sbjct: 113 KLEAAG 118

[Close]

BLAST of CsGy3G025320 vs. TrEMBL
Match: tr|A0A0A0L907|A0A0A0L907_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G623960 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.7e-99
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CsGy3G025320 vs. TrEMBL
Match: tr|A0A1S3BPI3|A0A1S3BPI3_CUCME (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 6.9e-93
Identity = 183/193 (94.82%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKLTVVA+SLQ RST  KIIGLSQVRFFQPDFTPRDP AKPKKYKYP FYDPYGPRPPPS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII LAERI ALPAAER QIGPTLGEKLRHPKLQEISVDGLDMG EGGAAAGSSNVEEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CsGy3G025320 vs. TrEMBL
Match: tr|A0A2C9VPU6|A0A2C9VPU6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G105200 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 9.1e-77
Identity = 151/193 (78.24%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MK   + +S+  R T  ++ G  QVRFFQ DF PRDP AKPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MKFVALVRSVHARFTLHEVTGPLQVRFFQHDFVPRDPKAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           +KIIELAERI ALP  ERCQIGPTL  KL+HPKLQ IS +G+D+G +G  AAG++ VEEK
Sbjct: 61  EKIIELAERIAALPPEERCQIGPTLQYKLKHPKLQTISTEGMDLGVQGSPAAGATKVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVRAFTNLGLKEAKDLVEKVP +LKQGVTKEEANGII
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPVLLKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CsGy3G025320 vs. TrEMBL
Match: tr|A0A067KFQ9|A0A067KFQ9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11471 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.0e-76
Identity = 150/193 (77.72%), Postives = 167/193 (86.53%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           M+   +A+S++ RSTF +I GL QVRFFQ DF PRDPN KPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MRFIALARSIRGRSTFQEITGLLQVRFFQHDFVPRDPNTKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII+LAERI ALP  E+ QIGPTL  KL+HPKLQ IS +G+D+GP+G  A G + VEEK
Sbjct: 61  DKIIQLAERIAALPLEEQRQIGPTLQRKLKHPKLQSISTEGMDLGPQGAQATGGTKVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVR FT+LGLKEAKDLVEKVP +LKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRTFTSLGLKEAKDLVEKVPVLLKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of CsGy3G025320 vs. TrEMBL
Match: tr|A0A059CHD8|A0A059CHD8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02092 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 5.5e-74
Identity = 150/194 (77.32%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKL +V +S  VR     I G  Q R FQ DF PRDP AKPKKYKYPAFYDPYGPRPPPS
Sbjct: 6   MKLDLVVRSAYVRLGLRGITGPLQTRSFQHDFVPRDPKAKPKKYKYPAFYDPYGPRPPPS 65

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII+LAERI  LPA ER QIGP L E+L+HPK+Q IS +G+D+GP+GGA AGS+  EEK
Sbjct: 66  DKIIQLAERIAGLPAEERAQIGPALQERLKHPKMQTISTEGMDLGPQGGAGAGSAKAEEK 125

Query: 121 K-EKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGI 180
           K EKTAFDVKLEKFDAA+KIKVIKEVRAFTNLGLKEAKDLVEK P +LKQGVTKEEANGI
Sbjct: 126 KAEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKAPILLKQGVTKEEANGI 185

Query: 181 IEKIKAAGGVAVME 194
           IEKIKAAGGVAVME
Sbjct: 186 IEKIKAAGGVAVME 199

The following BLAST results are available for this feature:

BLAST of CsGy3G025320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651634.1	2.6e-99	100.00	PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis sativus] >XP_011651...	[more]
XP_008450561.1	1.0e-92	94.82	PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_008450569.1 PREDICTED...	[more]
XP_023525921.1	1.0e-84	86.01	uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo]	[more]
XP_022949504.1	1.8e-84	85.49	uncharacterized protein LOC111452831 [Cucurbita moschata]	[more]
XP_022998047.1	2.3e-84	84.97	uncharacterized protein LOC111492812 [Cucurbita maxima]	[more]

BLAST of CsGy3G025320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06040.1	6.0e-58	65.80	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G70190.1	2.5e-24	40.61	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT4G36420.1	1.4e-22	45.52	Ribosomal protein L12 family protein	[more]
AT4G37660.1	4.0e-22	64.37	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT2G03130.1	1.9e-16	50.59	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

BLAST of CsGy3G025320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2C031\|RL7_PROM1	6.0e-15	52.94	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=16755...	[more]
sp\|P41189\|RL7_LIBAF	1.1e-13	53.01	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]
sp\|Q46HH2\|RL7_PROMT	2.5e-13	49.41	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) OX=59920...	[more]
sp\|B8HVL2\|RL7_CYAP4	5.6e-13	40.77	50S ribosomal protein L7/L12 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX...	[more]
sp\|Q9L5W4\|RL7_LIBAC	9.5e-13	62.12	50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494...	[more]

BLAST of CsGy3G025320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L907\|A0A0A0L907_CUCSA	1.7e-99	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G623960 PE=4 SV=1	[more]
tr\|A0A1S3BPI3\|A0A1S3BPI3_CUCME	6.9e-93	94.82	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1	[more]
tr\|A0A2C9VPU6\|A0A2C9VPU6_MANES	9.1e-77	78.24	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G105200 PE=4 SV=...	[more]
tr\|A0A067KFQ9\|A0A067KFQ9_JATCU	2.0e-76	77.72	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11471 PE=4 SV=1	[more]
tr\|A0A059CHD8\|A0A059CHD8_EUCGR	5.5e-74	77.32	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02092 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000206	Ribosomal_L7/12
IPR014719	Ribosomal_L7/12_C/ClpS-like
IPR013823	Ribosomal_L7/L12_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G025320.1	CsGy3G025320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 126..189 e-value: 4.7E-22 score: 78.0
IPR013823	Ribosomal protein L7/L12, C-terminal	PRODOM	PD001326		coord: 127..187 e-value: 1.0E-20 score: 244.0
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	G3DSA:3.30.1390.10		coord: 119..192 e-value: 2.0E-25 score: 90.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	SSF54736	ClpS-like	coord: 122..192
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 14..193
None	No IPR available	PANTHER	PTHR24089:SF314	SUBFAMILY NOT NAMED	coord: 14..193
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 62..192 e-value: 1.04116E-34 score: 119.953

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G025320	Csa3G623960	Cucumber (Chinese Long) v2	cgybcuB111
CsGy3G025320	CSPI03G27160	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G025320	CsaV3_3G028630	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G025320	Cucumber (Gy14) v2	cgybcgybB052
CsGy3G025320	Cucumber (Gy14) v2	cgybcgybB082
CsGy3G025320	Cucumber (Gy14) v2	cgybcgybB116
CsGy3G025320	Cucurbita maxima (Rimu)	cgybcmaB314
CsGy3G025320	Cucurbita maxima (Rimu)	cgybcmaB375
CsGy3G025320	Cucurbita maxima (Rimu)	cgybcmaB396
CsGy3G025320	Cucurbita maxima (Rimu)	cgybcmaB448
CsGy3G025320	Cucurbita maxima (Rimu)	cgybcmaB457
CsGy3G025320	Cucurbita moschata (Rifu)	cgybcmoB288
CsGy3G025320	Cucurbita moschata (Rifu)	cgybcmoB348
CsGy3G025320	Cucurbita moschata (Rifu)	cgybcmoB368
CsGy3G025320	Cucurbita moschata (Rifu)	cgybcmoB416
CsGy3G025320	Cucurbita moschata (Rifu)	cgybcmoB424
CsGy3G025320	Cucurbita moschata (Rifu)	cgybcmoB431
CsGy3G025320	Cucurbita pepo (Zucchini)	cgybcpeB331
CsGy3G025320	Cucurbita pepo (Zucchini)	cgybcpeB352
CsGy3G025320	Cucurbita pepo (Zucchini)	cgybcpeB353
CsGy3G025320	Cucurbita pepo (Zucchini)	cgybcpeB404
CsGy3G025320	Cucurbita pepo (Zucchini)	cgybcpeB424
CsGy3G025320	Cucurbita pepo (Zucchini)	cgybcpeB452
CsGy3G025320	Cucumber (Chinese Long) v2	cgybcuB152
CsGy3G025320	Bottle gourd (USVL1VR-Ls)	cgyblsiB143
CsGy3G025320	Bottle gourd (USVL1VR-Ls)	cgyblsiB164
CsGy3G025320	Bottle gourd (USVL1VR-Ls)	cgyblsiB185
CsGy3G025320	Melon (DHL92) v3.5.1	cgybmeB187
CsGy3G025320	Melon (DHL92) v3.5.1	cgybmeB216
CsGy3G025320	Melon (DHL92) v3.6.1	cgybmedB195
CsGy3G025320	Melon (DHL92) v3.6.1	cgybmedB218
CsGy3G025320	Watermelon (Charleston Gray)	cgybwcgB173
CsGy3G025320	Watermelon (Charleston Gray)	cgybwcgB222
CsGy3G025320	Watermelon (Charleston Gray)	cgybwcgB233
CsGy3G025320	Watermelon (97103) v1	cgybwmB181
CsGy3G025320	Watermelon (97103) v1	cgybwmB212
CsGy3G025320	Watermelon (97103) v1	cgybwmB237
CsGy3G025320	Watermelon (97103) v1	cgybwmB260
CsGy3G025320	Wild cucumber (PI 183967)	cgybcpiB122
CsGy3G025320	Silver-seed gourd	carcgybB0073
CsGy3G025320	Silver-seed gourd	carcgybB0252
CsGy3G025320	Silver-seed gourd	carcgybB0773
CsGy3G025320	Silver-seed gourd	carcgybB0947
CsGy3G025320	Silver-seed gourd	carcgybB1058
CsGy3G025320	Cucumber (Chinese Long) v3	cgybcucB116
CsGy3G025320	Cucumber (Chinese Long) v3	cgybcucB124
CsGy3G025320	Cucumber (Chinese Long) v3	cgybcucB158
CsGy3G025320	Watermelon (97103) v2	cgybwmbB213
CsGy3G025320	Watermelon (97103) v2	cgybwmbB219
CsGy3G025320	Watermelon (97103) v2	cgybwmbB225
CsGy3G025320	Wax gourd	cgybwgoB296