CsGy3G025220 (gene) Cucumber (Gy14) v2

NameCsGy3G025220
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionribokinase isoform X2
LocationChr3 : 25608619 .. 25609433 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGCATGCTTCTCCTAAAGCAAGCAAGTATGAGTCTTTTAAAACAATGTTGTGCGTTGAGTTTAAAATGATATTTTGTGAATTGTAAAGAACATATAGGCTCTATTATACAGTTGTTATAATCCTCAATTCTTAGTATTGAGAAGTTCTTCGTATCTTATATTTCATGGGGAAGGCTTCTGACAATTATAATTTCTGAGAGAAGCGCAAAATAAAATGACCGAATGTACATATACTGTAATCATCTCAAAATTTATTGACTGGCAAAGTTCTTTAGGCACACTCGTACATGCATCCACACCCCAGGATCTCCTCCCATGGTGCCAGATGACCTTTCGCGATCAAGCTTGTTGTCTGCTTTAGATGGGGCTAAAATTGTATATTCTGACATAAGATTGCACGAAACTGCTTTGCTTGTTGCACAAGAGGTAAAGATATCATTAATTTCTTTGATGCTTCAAGTTTTCACTCCTTGTGTTGTGCTTACTCCTTTAAGTAGATTTTTTAGGAAACAGAGTTCTCTGTTCACCTTCCAGGTTGAAAGTTTGAAAGAAAATCAATATTTTTCTTCTTTCAGCTTTTGGGTTGTTATTTCTTTGTCACTTTTCAAACATCAATGAACTGGTTGTTGATCCATGTTGTAAGGGACATTGATATTACCTTTTCTGTACAGGCAGCTCGGCAGAATATACCTATGTTGATTGATGCAGAAAGGAAAAGGGAAGGTCTGGATGATCTCCTGGCATTTGCCAGTTATGTTGTCTGTTCAACAAGTTTTCCACAGGCAAGTGCACTTTCTTCGTGCTCTTAA

mRNA sequence

ATGTTAGGCATGCTTCTCCTAAAGCAAGCAAGATCTCCTCCCATGGTGCCAGATGACCTTTCGCGATCAAGCTTGTTGTCTGCTTTAGATGGGGCTAAAATTGTATATTCTGACATAAGATTGCACGAAACTGCTTTGCTTGTTGCACAAGAGGTAAAGATATCATTAATTTCTTTGATGCTTCAAGTTTTCACTCCTTGTGTTGTGCTTACTCCTTTAAGTAGATTTTTTAGGAAACAGAGTTCTCTGTTCACCTTCCAGGTTGAAACTCGGCAGAATATACCTATGTTGATTGATGCAGAAAGGAAAAGGGAAGGTCTGGATGATCTCCTGGCATTTGCCAGTTATGTTGTCTGTTCAACAAGTTTTCCACAGGCAAGTGCACTTTCTTCGTGCTCTTAA

Coding sequence (CDS)

ATGTTAGGCATGCTTCTCCTAAAGCAAGCAAGATCTCCTCCCATGGTGCCAGATGACCTTTCGCGATCAAGCTTGTTGTCTGCTTTAGATGGGGCTAAAATTGTATATTCTGACATAAGATTGCACGAAACTGCTTTGCTTGTTGCACAAGAGGTAAAGATATCATTAATTTCTTTGATGCTTCAAGTTTTCACTCCTTGTGTTGTGCTTACTCCTTTAAGTAGATTTTTTAGGAAACAGAGTTCTCTGTTCACCTTCCAGGTTGAAACTCGGCAGAATATACCTATGTTGATTGATGCAGAAAGGAAAAGGGAAGGTCTGGATGATCTCCTGGCATTTGCCAGTTATGTTGTCTGTTCAACAAGTTTTCCACAGGCAAGTGCACTTTCTTCGTGCTCTTAA

Protein sequence

MLGMLLLKQARSPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLTPLSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQASALSSCS
BLAST of CsGy3G025220 vs. NCBI nr
Match: XP_004152009.1 (PREDICTED: ribokinase [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 75/114 (65.79%), Postives = 75/114 (65.79%), Query Frame = 0

Query: 12  SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLT 71
           SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQE                    
Sbjct: 160 SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEA------------------- 219

Query: 72  PLSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                              RQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ
Sbjct: 220 ------------------ARQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 236

BLAST of CsGy3G025220 vs. NCBI nr
Match: XP_008447353.1 (PREDICTED: ribokinase isoform X1 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 6.4e-25
Identity = 71/114 (62.28%), Postives = 73/114 (64.04%), Query Frame = 0

Query: 12  SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLT 71
           SPPMVPDDLSRSSLLSALDGA+IVYSD+RLHETALLVAQE                    
Sbjct: 159 SPPMVPDDLSRSSLLSALDGARIVYSDVRLHETALLVAQEA------------------- 218

Query: 72  PLSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                              RQNIPMLIDAERKREGLDDLL FASYVVCST FPQ
Sbjct: 219 ------------------ARQNIPMLIDAERKREGLDDLLTFASYVVCSTRFPQ 235

BLAST of CsGy3G025220 vs. NCBI nr
Match: XP_008447354.1 (PREDICTED: ribokinase isoform X2 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 6.4e-25
Identity = 71/114 (62.28%), Postives = 73/114 (64.04%), Query Frame = 0

Query: 12  SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLT 71
           SPPMVPDDLSRSSLLSALDGA+IVYSD+RLHETALLVAQE                    
Sbjct: 129 SPPMVPDDLSRSSLLSALDGARIVYSDVRLHETALLVAQEA------------------- 188

Query: 72  PLSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                              RQNIPMLIDAERKREGLDDLL FASYVVCST FPQ
Sbjct: 189 ------------------ARQNIPMLIDAERKREGLDDLLTFASYVVCSTRFPQ 205

BLAST of CsGy3G025220 vs. NCBI nr
Match: XP_022967275.1 (ribokinase-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 7.1e-24
Identity = 69/114 (60.53%), Postives = 74/114 (64.91%), Query Frame = 0

Query: 12  SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLT 71
           SPPMVPDDLSRSSLLSALDGAKIVY D+RLHETALLVA+E                    
Sbjct: 162 SPPMVPDDLSRSSLLSALDGAKIVYFDVRLHETALLVAEEA------------------- 221

Query: 72  PLSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                              +QNIP+LIDAERKREGLD+LLAFASYVVCSTSFPQ
Sbjct: 222 ------------------AQQNIPILIDAERKREGLDELLAFASYVVCSTSFPQ 238

BLAST of CsGy3G025220 vs. NCBI nr
Match: XP_022967276.1 (ribokinase-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 7.1e-24
Identity = 69/114 (60.53%), Postives = 74/114 (64.91%), Query Frame = 0

Query: 12  SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLT 71
           SPPMVPDDLSRSSLLSALDGAKIVY D+RLHETALLVA+E                    
Sbjct: 162 SPPMVPDDLSRSSLLSALDGAKIVYFDVRLHETALLVAEEA------------------- 221

Query: 72  PLSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                              +QNIP+LIDAERKREGLD+LLAFASYVVCSTSFPQ
Sbjct: 222 ------------------AQQNIPILIDAERKREGLDELLAFASYVVCSTSFPQ 238

BLAST of CsGy3G025220 vs. TAIR10
Match: AT4G28706.4 (pfkB-like carbohydrate kinase family protein)

HSP 1 Score: 91.7 bits (226), Expect = 3.8e-19
Identity = 51/113 (45.13%), Postives = 65/113 (57.52%), Query Frame = 0

Query: 13  PPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLTP 72
           PPM+P DLS+SS+LSALD A IVY D+RLHETAL++A+E                     
Sbjct: 162 PPMLPTDLSQSSMLSALDRASIVYFDVRLHETALVIAKEA-------------------- 221

Query: 73  LSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                            +R+ IP+L+D E+KR+GLDDLL FA YVVC  +FPQ
Sbjct: 222 -----------------SRKKIPILVDTEKKRDGLDDLLPFADYVVCPENFPQ 237

BLAST of CsGy3G025220 vs. TAIR10
Match: AT5G43910.2 (pfkB-like carbohydrate kinase family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-12
Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = 0

Query: 13  PPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLTP 72
           PP++PDDL+ S LL  LDG +++Y + R  E  LL+AQ+                     
Sbjct: 126 PPLLPDDLTESLLLDVLDGVRVLYVNGRSREAELLLAQKAH------------------- 185

Query: 73  LSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                              +NIP+LI+AE+KR GLD+L+  A Y +CST+FPQ
Sbjct: 186 ------------------SKNIPILINAEKKRTGLDELIDLADYAICSTNFPQ 201

BLAST of CsGy3G025220 vs. TrEMBL
Match: tr|A0A1S3BH87|A0A1S3BH87_CUCME (ribokinase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489824 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-25
Identity = 71/114 (62.28%), Postives = 73/114 (64.04%), Query Frame = 0

Query: 12  SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLT 71
           SPPMVPDDLSRSSLLSALDGA+IVYSD+RLHETALLVAQE                    
Sbjct: 159 SPPMVPDDLSRSSLLSALDGARIVYSDVRLHETALLVAQEA------------------- 218

Query: 72  PLSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                              RQNIPMLIDAERKREGLDDLL FASYVVCST FPQ
Sbjct: 219 ------------------ARQNIPMLIDAERKREGLDDLLTFASYVVCSTRFPQ 235

BLAST of CsGy3G025220 vs. TrEMBL
Match: tr|A0A1S3BH76|A0A1S3BH76_CUCME (ribokinase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489824 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-25
Identity = 71/114 (62.28%), Postives = 73/114 (64.04%), Query Frame = 0

Query: 12  SPPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLT 71
           SPPMVPDDLSRSSLLSALDGA+IVYSD+RLHETALLVAQE                    
Sbjct: 129 SPPMVPDDLSRSSLLSALDGARIVYSDVRLHETALLVAQEA------------------- 188

Query: 72  PLSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQ 126
                              RQNIPMLIDAERKREGLDDLL FASYVVCST FPQ
Sbjct: 189 ------------------ARQNIPMLIDAERKREGLDDLLTFASYVVCSTRFPQ 205

BLAST of CsGy3G025220 vs. TrEMBL
Match: tr|B9T5V5|B9T5V5_RICCO (Kinase, putative OS=Ricinus communis OX=3988 GN=RCOM_0995940 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-19
Identity = 62/114 (54.39%), Postives = 66/114 (57.89%), Query Frame = 0

Query: 13  PPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLTP 72
           PPM PDDLS+SSLLSALDGA +VYSD RL E+ALLVAQE                     
Sbjct: 129 PPMTPDDLSQSSLLSALDGASVVYSDGRLPESALLVAQEA-------------------- 188

Query: 73  LSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQA 127
                            TR NIP+LIDAERKREGLDDLL  ASY VCS  FPQA
Sbjct: 189 -----------------TRSNIPILIDAERKREGLDDLLKLASYAVCSAKFPQA 205

BLAST of CsGy3G025220 vs. TrEMBL
Match: tr|A0A2R6P7F4|A0A2R6P7F4_ACTCH (Ribokinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc32018 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 59/115 (51.30%), Postives = 67/115 (58.26%), Query Frame = 0

Query: 13  PPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLTP 72
           PPMVP DLS+SSL SA+DG  +VY D+RLHETAL+VAQE                     
Sbjct: 170 PPMVPGDLSKSSLSSAVDGVTLVYFDVRLHETALVVAQEA-------------------- 229

Query: 73  LSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQAS 128
                             R+N+P+LIDAERKREGLDDLL FA YVVCS  FPQAS
Sbjct: 230 -----------------YRRNVPILIDAERKREGLDDLLNFADYVVCSAKFPQAS 247

BLAST of CsGy3G025220 vs. TrEMBL
Match: tr|A0A067JRD0|A0A067JRD0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17600 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 58/114 (50.88%), Postives = 67/114 (58.77%), Query Frame = 0

Query: 13  PPMVPDDLSRSSLLSALDGAKIVYSDIRLHETALLVAQEVKISLISLMLQVFTPCVVLTP 72
           PPM+PDDLS+SSLLSALDG ++ Y D+RL ETAL+VA+E                     
Sbjct: 180 PPMIPDDLSQSSLLSALDGVRLAYFDVRLPETALVVAEEA-------------------- 239

Query: 73  LSRFFRKQSSLFTFQVETRQNIPMLIDAERKREGLDDLLAFASYVVCSTSFPQA 127
                            TR+NIP+LIDAERKREGLDD L  ASYVVCS  FPQA
Sbjct: 240 -----------------TRRNIPVLIDAERKREGLDDFLKLASYVVCSAKFPQA 256

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004152009.12.0e-2665.79PREDICTED: ribokinase [Cucumis sativus][more]
XP_008447353.16.4e-2562.28PREDICTED: ribokinase isoform X1 [Cucumis melo][more]
XP_008447354.16.4e-2562.28PREDICTED: ribokinase isoform X2 [Cucumis melo][more]
XP_022967275.17.1e-2460.53ribokinase-like isoform X1 [Cucurbita maxima][more]
XP_022967276.17.1e-2460.53ribokinase-like isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT4G28706.43.8e-1945.13pfkB-like carbohydrate kinase family protein[more]
AT5G43910.21.2e-1235.40pfkB-like carbohydrate kinase family protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BH87|A0A1S3BH87_CUCME4.3e-2562.28ribokinase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489824 PE=3 SV=1[more]
tr|A0A1S3BH76|A0A1S3BH76_CUCME4.3e-2562.28ribokinase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489824 PE=3 SV=1[more]
tr|B9T5V5|B9T5V5_RICCO3.5e-1954.39Kinase, putative OS=Ricinus communis OX=3988 GN=RCOM_0995940 PE=3 SV=1[more]
tr|A0A2R6P7F4|A0A2R6P7F4_ACTCH1.0e-1851.30Ribokinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc32018 PE... [more]
tr|A0A067JRD0|A0A067JRD0_JATCU1.0e-1850.88Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17600 PE=3 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G025220.1CsGy3G025220.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR42774:SF1PFKB-LIKE CARBOHYDRATE KINASE FAMILY PROTEINcoord: 80..126
NoneNo IPR availablePANTHERPTHR42774FAMILY NOT NAMEDcoord: 12..61
NoneNo IPR availablePANTHERPTHR42774:SF1PFKB-LIKE CARBOHYDRATE KINASE FAMILY PROTEINcoord: 12..61
NoneNo IPR availablePANTHERPTHR42774FAMILY NOT NAMEDcoord: 80..126

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G025220Cucumber (Gy14) v2cgybcgybB052
CsGy3G025220Cucumber (Gy14) v2cgybcgybB082
CsGy3G025220Cucurbita maxima (Rimu)cgybcmaB314
CsGy3G025220Cucurbita maxima (Rimu)cgybcmaB375
CsGy3G025220Cucurbita maxima (Rimu)cgybcmaB396
CsGy3G025220Cucurbita maxima (Rimu)cgybcmaB448
CsGy3G025220Cucurbita maxima (Rimu)cgybcmaB457
CsGy3G025220Cucurbita moschata (Rifu)cgybcmoB288
CsGy3G025220Cucurbita moschata (Rifu)cgybcmoB348
CsGy3G025220Cucurbita moschata (Rifu)cgybcmoB368
CsGy3G025220Cucurbita moschata (Rifu)cgybcmoB416
CsGy3G025220Cucurbita moschata (Rifu)cgybcmoB424
CsGy3G025220Cucurbita moschata (Rifu)cgybcmoB431
CsGy3G025220Cucurbita pepo (Zucchini)cgybcpeB331
CsGy3G025220Cucurbita pepo (Zucchini)cgybcpeB352
CsGy3G025220Cucurbita pepo (Zucchini)cgybcpeB353
CsGy3G025220Cucurbita pepo (Zucchini)cgybcpeB404
CsGy3G025220Cucurbita pepo (Zucchini)cgybcpeB424
CsGy3G025220Cucurbita pepo (Zucchini)cgybcpeB452
CsGy3G025220Cucumber (Chinese Long) v2cgybcuB111
CsGy3G025220Cucumber (Chinese Long) v2cgybcuB122
CsGy3G025220Bottle gourd (USVL1VR-Ls)cgyblsiB143
CsGy3G025220Bottle gourd (USVL1VR-Ls)cgyblsiB185
CsGy3G025220Bottle gourd (USVL1VR-Ls)cgyblsiB195
CsGy3G025220Melon (DHL92) v3.5.1cgybmeB187
CsGy3G025220Melon (DHL92) v3.5.1cgybmeB216
CsGy3G025220Melon (DHL92) v3.6.1cgybmedB188
CsGy3G025220Melon (DHL92) v3.6.1cgybmedB195
CsGy3G025220Melon (DHL92) v3.6.1cgybmedB218
CsGy3G025220Watermelon (Charleston Gray)cgybwcgB222
CsGy3G025220Watermelon (Charleston Gray)cgybwcgB233
CsGy3G025220Watermelon (97103) v1cgybwmB212
CsGy3G025220Watermelon (97103) v1cgybwmB237
CsGy3G025220Watermelon (97103) v1cgybwmB260
CsGy3G025220Wild cucumber (PI 183967)cgybcpiB110
CsGy3G025220Wild cucumber (PI 183967)cgybcpiB122
CsGy3G025220Silver-seed gourdcarcgybB0252
CsGy3G025220Silver-seed gourdcarcgybB0746
CsGy3G025220Silver-seed gourdcarcgybB0773
CsGy3G025220Silver-seed gourdcarcgybB0947
CsGy3G025220Silver-seed gourdcarcgybB1058
CsGy3G025220Cucumber (Chinese Long) v3cgybcucB116
CsGy3G025220Cucumber (Chinese Long) v3cgybcucB117
CsGy3G025220Cucumber (Chinese Long) v3cgybcucB124
CsGy3G025220Watermelon (97103) v2cgybwmbB213
CsGy3G025220Watermelon (97103) v2cgybwmbB219
CsGy3G025220Watermelon (97103) v2cgybwmbB225
CsGy3G025220Wax gourdcgybwgoB296