Cp4.1LG19g09720 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG19g09720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP2/ERF domain-containing transcription factor
LocationCp4.1LG19 : 5882460 .. 5883470 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTTAGATTTTTGCACTGGAATTTCTGCGCCGGTTTACTCTTCGGATCCTTTTTGCGAAGAGTTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTGTTTCATCCTCTTCTTCTTCTTCTTCTTCTTCTGTTTCTTATCAGCCTAATGTGAACCCTGATTTTTGCTCCCCGTCGAGCATCCGCTTGTTTCCTCAAGCGTGTTCGGGAATTGAACAAATGGGTCTCGAGCAATCGGGTCCAATCGGGCTAAACAATCCCACCCCTTCACAAGTTCTCCAAATTCAAGCTCAAATCCAACTACCCTCACAAACTCTGTCTTCCTTCCCTTCTTCTTTTTCATTCCAGTCTCGAGTTTCGTCCCAATACCATAGCGTCCTTGCCCCCAAATCCATTCCGATGAAGTACACCGGCTCTCCGACTAAGCCCACTAGAATCTACAGGGGAATCCGGCAGCGCCACTGGGGAAAATGGGTCGCCGAAATTAGACTCCCCAAGAACCGAACCAGACTCTGGCTTGGCACTTTTGACACGGCCGAGGAGGCGGCTTTAGCCTATGACAAAGCTGCTTACAAACTCCGTGGCGACTTGGCTCGCCTCAATTTTCCACATCTCAAACACAAATTCGGGGACTTCGAGCCTCTTCACTCTTCTGTGGACGCGAAACTTCAAGCAATTTGTCAAAGCTTGAAACAGGGGGAAACAGAGAAGCCACCGAGCGCTCCACCTCCATCTGAATCAAACTCAGTGGTTAACAATTTTAAGGAAGCGGAATTGAAAATCGAAGCGGAGACTTCATCTTCATCTTCATCTTCATGGTCATCTCCTTCGCTGTGTGAAGATTTCTCCACCGGGTCCTCCCCTGAGTCGAGTATTAGCTTCTTGGATTTCTCAGATTCGCAATGGGGTGAAGGAGAAGCATTCTGTTTGGAAAAGTATCCTTCCGTTGAAATTGATTGGGCAGCTCTGAATCAGCTGGGCGAATCAGAGTGTTTAATTTAG

mRNA sequence

ATGGCAGCAGCTTTAGATTTTTGCACTGGAATTTCTGCGCCGGTTTACTCTTCGGATCCTTTTTGCGAAGAGTTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTGTTTCATCCTCTTCTTCTTCTTCTTCTTCTTCTGTTTCTTATCAGCCTAATGTGAACCCTGATTTTTGCTCCCCGTCGAGCATCCGCTTGTTTCCTCAAGCGTGTTCGGGAATTGAACAAATGGGTCTCGAGCAATCGGGTCCAATCGGGCTAAACAATCCCACCCCTTCACAAGGGGAAACAGAGAAGCCACCGAGCGCTCCACCTCCATCTGAATCAAACTCAGTGGTTAACAATTTTAAGGAAGCGGAATTGAAAATCGAAGCGGAGACTTCATCTTCATCTTCATCTTCATGGTCATCTCCTTCGCTGTGTGAAGATTTCTCCACCGGGTCCTCCCCTGAGTCGAGTATTAGCTTCTTGGATTTCTCAGATTCGCAATGGGGTGAAGGAGAAGCATTCTGTTTGGAAAAGTATCCTTCCGTTGAAATTGATTGGGCAGCTCTGAATCAGCTGGGCGAATCAGAGTGTTTAATTTAG

Coding sequence (CDS)

ATGGCAGCAGCTTTAGATTTTTGCACTGGAATTTCTGCGCCGGTTTACTCTTCGGATCCTTTTTGCGAAGAGTTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTGTTTCATCCTCTTCTTCTTCTTCTTCTTCTTCTGTTTCTTATCAGCCTAATGTGAACCCTGATTTTTGCTCCCCGTCGAGCATCCGCTTGTTTCCTCAAGCGTGTTCGGGAATTGAACAAATGGGTCTCGAGCAATCGGGTCCAATCGGGCTAAACAATCCCACCCCTTCACAAGGGGAAACAGAGAAGCCACCGAGCGCTCCACCTCCATCTGAATCAAACTCAGTGGTTAACAATTTTAAGGAAGCGGAATTGAAAATCGAAGCGGAGACTTCATCTTCATCTTCATCTTCATGGTCATCTCCTTCGCTGTGTGAAGATTTCTCCACCGGGTCCTCCCCTGAGTCGAGTATTAGCTTCTTGGATTTCTCAGATTCGCAATGGGGTGAAGGAGAAGCATTCTGTTTGGAAAAGTATCCTTCCGTTGAAATTGATTGGGCAGCTCTGAATCAGCTGGGCGAATCAGAGTGTTTAATTTAG

Protein sequence

MAAALDFCTGISAPVYSSDPFCEELMKALQPFMKSAVSSSSSSSSSSVSYQPNVNPDFCSPSSIRLFPQACSGIEQMGLEQSGPIGLNNPTPSQGETEKPPSAPPPSESNSVVNNFKEAELKIEAETSSSSSSSWSSPSLCEDFSTGSSPESSISFLDFSDSQWGEGEAFCLEKYPSVEIDWAALNQLGESECLI
BLAST of Cp4.1LG19g09720 vs. TrEMBL
Match: A0A0A0KGT3_CUCSA (AP2/ERF domain-containing transcription factor OS=Cucumis sativus GN=Csa_6G500550 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.8e-25
Identity = 88/183 (48.09%), Postives = 105/183 (57.38%), Query Frame = 1

Query: 1   MAAALDFCTGISAPVYSSDPFCEELMKALQPFMKSAVSSSSSSSSSS--------VSYQP 60
           MAA +D   G S PVY SDPF EELMKALQPFMKSA+S+SSS S SS        VS QP
Sbjct: 1   MAAVIDVYGGTSTPVYYSDPFSEELMKALQPFMKSAISTSSSFSPSSSPSPPHPSVSSQP 60

Query: 61  NVNPDFCSPSSIRLFPQACSGIEQMGLEQSGPIGLNNPTPSQGETEKPPSAPPPSESNSV 120
            + PDFCSPSS RLF Q  SGIEQMG EQSGPIGLNNPTPSQ                 +
Sbjct: 61  RLIPDFCSPSSTRLFSQGFSGIEQMGFEQSGPIGLNNPTPSQ-----------------I 120

Query: 121 VNNFKEAELKIEAETSSSSSSSWSSPSLCEDFST---------GSSPESSISFLDFSDSQ 167
           +    +A++++ + T SS SSS S  S   +F T         GS P+ +  +       
Sbjct: 121 LQ--IQAQIQLPSPTMSSFSSSSSFQSQYHNFLTPKSFPMKHMGSPPKPNKLYRGVRQRH 164

BLAST of Cp4.1LG19g09720 vs. TrEMBL
Match: A0A067LEQ3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24071 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.1e-15
Identity = 59/109 (54.13%), Postives = 68/109 (62.39%), Query Frame = 1

Query: 1   MAAALDFCTGISAPVYS-SDPFCEELMKALQPFMKSAVSSSSSSSSS-------SVSY-- 60
           MAAA+D     +APV+S  DP  EELMKAL+PFMKSA  +S SSS S       S SY  
Sbjct: 1   MAAAIDIYNSKTAPVFSVMDPCREELMKALEPFMKSASPTSPSSSFSLSPPPFPSCSYHS 60

Query: 61  -----QPNVNPDFCSPSSIRLFPQACSGIEQMGLEQSGPIGLNNPTPSQ 95
                QPN  P+ CSPSS  +F Q  SG  QMG EQ+G IGLN+ TPSQ
Sbjct: 61  PICSSQPNFQPEACSPSSTHVFSQGFSGYNQMGFEQTGSIGLNHLTPSQ 109

BLAST of Cp4.1LG19g09720 vs. TrEMBL
Match: B9T4H7_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0198920 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 57/122 (46.72%), Postives = 69/122 (56.56%), Query Frame = 1

Query: 1   MAAALDFCTGISAPVYSS--DPFCEELMKALQPFMKSA---VSSSSSSSSSSVSYQ---- 60
           MAAA+DF +  + P   S  DP  EEL+KAL+PFMKSA    S+S +SSSSSVS+     
Sbjct: 1   MAAAIDFYSSSTTPSVFSFIDPGREELLKALEPFMKSASSPTSTSYNSSSSSVSHSTSSD 60

Query: 61  -------------------PNVNPDFCSPSSIRLFPQACSGIEQMGLEQSGPIGLNNPTP 95
                              P + PDFCSP S  LF Q  SG  Q+G EQ+G IGLN+ TP
Sbjct: 61  SLSPSPFYFPSYPSYDSSIPTMYPDFCSPLSTHLFSQGFSGYNQLGFEQTGSIGLNHLTP 120

BLAST of Cp4.1LG19g09720 vs. TrEMBL
Match: E7BLI5_GOSHI (C-repeat binding factor 20 OS=Gossypium hirsutum GN=DREB1C PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 52/96 (54.17%), Postives = 60/96 (62.50%), Query Frame = 1

Query: 1  MAAALDFCTGISAPVYSSDPFCEELMKALQPFMKSAVSSSSSSSSSSVSYQPNVNPDFCS 60
          MAAA+D     S     SDPF  ELMKAL+PFMKSA S+S  SSSSS S Q N+ P+FCS
Sbjct: 1  MAAAIDMYNSNSNSSVFSDPFSAELMKALEPFMKSASSTSPLSSSSSYS-QSNLYPEFCS 60

Query: 61 PSSIRLFPQA--CSGIEQMGLEQSGPIGLNNPTPSQ 95
          P    L  +   C+    MG EQ+G IGLN  TPSQ
Sbjct: 61 PWRTHLCSEQGFCNYQNLMGFEQTGSIGLNQLTPSQ 95

BLAST of Cp4.1LG19g09720 vs. TrEMBL
Match: A0A0D2QYD8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G240700 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 52/96 (54.17%), Postives = 60/96 (62.50%), Query Frame = 1

Query: 1  MAAALDFCTGISAPVYSSDPFCEELMKALQPFMKSAVSSSSSSSSSSVSYQPNVNPDFCS 60
          MAAA+D     S     SDPF  ELMKAL+PFMKSA S+S  SSSSS S Q N+ P+FCS
Sbjct: 1  MAAAIDMYNSSSNSSVFSDPFSAELMKALEPFMKSASSTSPLSSSSSYS-QSNLYPEFCS 60

Query: 61 PSSIRLFPQA--CSGIEQMGLEQSGPIGLNNPTPSQ 95
          P    L  +   C+    MG EQ+G IGLN  TPSQ
Sbjct: 61 PWRNHLCSEQRFCNYQNLMGFEQTGSIGLNQLTPSQ 95

BLAST of Cp4.1LG19g09720 vs. TAIR10
Match: AT4G39780.1 (AT4G39780.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.3e-07
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1

Query: 130 SSSSSWSSPSLCEDFSTGSSPESSIS-FLDFSDSQWGEGEAFCLEKYPSVEIDWAALNQL 189
           S  +S+S  S  E     SSPES I+ FLDFSDS + E  +F LEK+PSVEIDW A+++L
Sbjct: 214 SDENSFSDESHVES----SSPESGITTFLDFSDSGFDEIGSFGLEKFPSVEIDWDAISKL 272

Query: 190 GES 192
            ES
Sbjct: 274 SES 272

BLAST of Cp4.1LG19g09720 vs. NCBI nr
Match: gi|449451453|ref|XP_004143476.1| (PREDICTED: ethylene-responsive transcription factor ERF056 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 4.7e-28
Identity = 78/101 (77.23%), Postives = 84/101 (83.17%), Query Frame = 1

Query: 96  ETEKPPSAPPPSESNSVVNNFKEAELKIEAETSSSSSSSWSSPSLCEDFST--GSSPESS 155
           E EKP + P PSESNS VNNF E ELK E ETSSSSSSS  SPS  ED+ST  GSSP+SS
Sbjct: 248 EDEKPTTIPLPSESNSAVNNFCELELKSEVETSSSSSSS--SPSRSEDYSTSTGSSPDSS 307

Query: 156 ISFLDFSDSQWGEG-EAFCLEKYPSVEIDWAALNQLGESEC 194
           ISFLDFSDSQWGEG EAFCLEK+PS+EIDWAAL+QL ESEC
Sbjct: 308 ISFLDFSDSQWGEGVEAFCLEKFPSIEIDWAALSQLAESEC 346

BLAST of Cp4.1LG19g09720 vs. NCBI nr
Match: gi|659080103|ref|XP_008440612.1| (PREDICTED: ethylene-responsive transcription factor ERF060 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 2.3e-27
Identity = 77/101 (76.24%), Postives = 83/101 (82.18%), Query Frame = 1

Query: 96  ETEKPPSAPPPSESNSVVNNFKEAELKIEAETSSSSSSSWSSPSLCEDFST--GSSPESS 155
           E EKP + P PSESNS VNNF E ELK E ETS SSSSS  SPS  ED+ST  GSSP+SS
Sbjct: 251 EDEKPTTIPLPSESNSAVNNFWEPELKSEVETSFSSSSS--SPSRSEDYSTSTGSSPDSS 310

Query: 156 ISFLDFSDSQWGEG-EAFCLEKYPSVEIDWAALNQLGESEC 194
           ISFLDFSDSQWGEG EAFCLEK+PS+EIDWAAL+QL ESEC
Sbjct: 311 ISFLDFSDSQWGEGVEAFCLEKFPSIEIDWAALSQLAESEC 349

BLAST of Cp4.1LG19g09720 vs. NCBI nr
Match: gi|700193559|gb|KGN48763.1| (AP2/ERF domain-containing transcription factor [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-24
Identity = 88/183 (48.09%), Postives = 105/183 (57.38%), Query Frame = 1

Query: 1   MAAALDFCTGISAPVYSSDPFCEELMKALQPFMKSAVSSSSSSSSSS--------VSYQP 60
           MAA +D   G S PVY SDPF EELMKALQPFMKSA+S+SSS S SS        VS QP
Sbjct: 1   MAAVIDVYGGTSTPVYYSDPFSEELMKALQPFMKSAISTSSSFSPSSSPSPPHPSVSSQP 60

Query: 61  NVNPDFCSPSSIRLFPQACSGIEQMGLEQSGPIGLNNPTPSQGETEKPPSAPPPSESNSV 120
            + PDFCSPSS RLF Q  SGIEQMG EQSGPIGLNNPTPSQ                 +
Sbjct: 61  RLIPDFCSPSSTRLFSQGFSGIEQMGFEQSGPIGLNNPTPSQ-----------------I 120

Query: 121 VNNFKEAELKIEAETSSSSSSSWSSPSLCEDFST---------GSSPESSISFLDFSDSQ 167
           +    +A++++ + T SS SSS S  S   +F T         GS P+ +  +       
Sbjct: 121 LQ--IQAQIQLPSPTMSSFSSSSSFQSQYHNFLTPKSFPMKHMGSPPKPNKLYRGVRQRH 164

BLAST of Cp4.1LG19g09720 vs. NCBI nr
Match: gi|802537176|ref|XP_012093083.1| (PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas])

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 59/109 (54.13%), Postives = 68/109 (62.39%), Query Frame = 1

Query: 1   MAAALDFCTGISAPVYS-SDPFCEELMKALQPFMKSAVSSSSSSSSS-------SVSY-- 60
           MAAA+D     +APV+S  DP  EELMKAL+PFMKSA  +S SSS S       S SY  
Sbjct: 1   MAAAIDIYNSKTAPVFSVMDPCREELMKALEPFMKSASPTSPSSSFSLSPPPFPSCSYHS 60

Query: 61  -----QPNVNPDFCSPSSIRLFPQACSGIEQMGLEQSGPIGLNNPTPSQ 95
                QPN  P+ CSPSS  +F Q  SG  QMG EQ+G IGLN+ TPSQ
Sbjct: 61  PICSSQPNFQPEACSPSSTHVFSQGFSGYNQMGFEQTGSIGLNHLTPSQ 109

BLAST of Cp4.1LG19g09720 vs. NCBI nr
Match: gi|1009173268|ref|XP_015867725.1| (PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Ziziphus jujuba])

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 63/121 (52.07%), Postives = 71/121 (58.68%), Query Frame = 1

Query: 1   MAAALDFCTGISA-PVYSSDPFCEELMKALQPFMKSAVSSSS------------SSSSSS 60
           MAAA+D  +  S  PV  SDPF EELMKAL+PFMKSA S+SS            SSSSSS
Sbjct: 1   MAAAIDIYSSSSTNPVVFSDPFREELMKALEPFMKSASSTSSITSLPASPSSPCSSSSSS 60

Query: 61  -------VSYQP-------NVNPDFCSPSSIRLFPQACSGIEQMGLEQSGPIGLNNPTPS 95
                   SY P       N++PDFCSPSS  +F Q  SG  QMG EQ+G IGLN  T S
Sbjct: 61  HFSSYPSCSYSPISSSSQTNLHPDFCSPSSTHMFSQGFSGYNQMGFEQTGSIGLNQLTQS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGT3_CUCSA9.8e-2548.09AP2/ERF domain-containing transcription factor OS=Cucumis sativus GN=Csa_6G50055... [more]
A0A067LEQ3_JATCU7.1e-1554.13Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24071 PE=4 SV=1[more]
B9T4H7_RICCO1.5e-1246.72DNA binding protein, putative OS=Ricinus communis GN=RCOM_0198920 PE=4 SV=1[more]
E7BLI5_GOSHI1.6e-1154.17C-repeat binding factor 20 OS=Gossypium hirsutum GN=DREB1C PE=2 SV=1[more]
A0A0D2QYD8_GOSRA2.1e-1154.17Uncharacterized protein OS=Gossypium raimondii GN=B456_007G240700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G39780.16.3e-0753.97 Integrase-type DNA-binding superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449451453|ref|XP_004143476.1|4.7e-2877.23PREDICTED: ethylene-responsive transcription factor ERF056 [Cucumis sativus][more]
gi|659080103|ref|XP_008440612.1|2.3e-2776.24PREDICTED: ethylene-responsive transcription factor ERF060 [Cucumis melo][more]
gi|700193559|gb|KGN48763.1|1.4e-2448.09AP2/ERF domain-containing transcription factor [Cucumis sativus][more]
gi|802537176|ref|XP_012093083.1|1.0e-1454.13PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas... [more]
gi|1009173268|ref|XP_015867725.1|1.3e-1452.07PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Ziziphus jujuba... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g09720.1Cp4.1LG19g09720.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g09720Cp4.1LG10g01290Cucurbita pepo (Zucchini)cpecpeB076